View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7728_low_4 (Length: 623)
Name: NF7728_low_4
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7728_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 378 - 610
Target Start/End: Original strand, 3285707 - 3285939
Alignment:
| Q |
378 |
ctcactttaggtgattggtggtgaccaagttttctgatcggagactcaacggcacgacggttccggcgaagattaggaaacaaagcttgtgaagaaggtg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285707 |
ctcactttaggtgattggtggtgaccaagttttctgatcggagactcaacggcacgacggttccggcgaagattaggaaacaaagcttgtgaagaaggtg |
3285806 |
T |
|
| Q |
478 |
caagaaacctttcaaaaatggccatgagtaagaacattgaaataagaacagcagtagcaacaaaaccaaaggagacagcattaacagaactatcaaaatt |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3285807 |
caagaaacctttcaaaaatggccatgagtaagaacattgaaataagaacagcagtagcaacaaaaccaaaggagacagcattaacagaactatcaaagtt |
3285906 |
T |
|
| Q |
578 |
gttgctgttgttgttactccaatgttgttgttg |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3285907 |
gttgctgttgttgttactccaatgttgttgttg |
3285939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 3285330 - 3285518
Alignment:
| Q |
1 |
aagcttaagcatactagtatgaaagtttgacaaattcaaggatcaaagaagaacacacatccttaaaataatggaacagtaaaatacacattaaaggctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285330 |
aagcttaagcatactagtatgaaagtttgacaaattcaaggatcaaagaagaacacacatccttaaaataatggaacagtaaaatacacattaaaggctt |
3285429 |
T |
|
| Q |
101 |
taagaaaagagatcaagaaagaagaaataactgtgatgaatgagaacagtgaaactttcttaattagacatgacagaggaattcatcag |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285430 |
taagaaaagagatcaagaaagaagaaataactgtgatgaatgagaacagtgaaactttcttaattagacatgacagaggaattcatcag |
3285518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 3285552 - 3285651
Alignment:
| Q |
223 |
attaattagatgagaagtaaaagcaaccaatagaaacaaacaacaaaacatttttgtcagataaataaataatcatcattgtttaggaaagtcacattac |
322 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3285552 |
attaataagatgagaagtaaaagcaacctatagaaacaaacaacaaaacatttttgtcagataaataaataatcatcattgtttaggaaagtcacattac |
3285651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University