View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7728_low_6 (Length: 399)

Name: NF7728_low_6
Description: NF7728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7728_low_6
NF7728_low_6
[»] chr2 (17 HSPs)
chr2 (111-380)||(37561834-37562104)
chr2 (19-149)||(25747837-25747967)
chr2 (19-122)||(43858194-43858298)
chr2 (19-122)||(3853922-3854026)
chr2 (40-151)||(8041322-8041432)
chr2 (43-144)||(34433266-34433368)
chr2 (100-151)||(12110977-12111028)
chr2 (85-149)||(3602415-3602479)
chr2 (69-156)||(36548272-36548359)
chr2 (85-151)||(23267317-23267383)
chr2 (100-149)||(3476329-3476378)
chr2 (43-151)||(26806209-26806317)
chr2 (85-142)||(31224769-31224826)
chr2 (100-149)||(37745784-37745833)
chr2 (43-122)||(1945021-1945101)
chr2 (43-122)||(2213552-2213632)
chr2 (43-122)||(44619043-44619123)
[»] chr5 (9 HSPs)
chr5 (10-150)||(3747544-3747684)
chr5 (19-151)||(7178805-7178937)
chr5 (85-150)||(35847843-35847908)
chr5 (43-122)||(22482240-22482320)
chr5 (66-144)||(2694719-2694797)
chr5 (68-133)||(7715017-7715082)
chr5 (43-122)||(3667905-3667985)
chr5 (66-122)||(13253064-13253120)
chr5 (43-122)||(35760240-35760320)
[»] chr3 (13 HSPs)
chr3 (10-151)||(37698345-37698486)
chr3 (85-150)||(52813295-52813360)
chr3 (19-144)||(49526631-49526757)
chr3 (100-151)||(21023172-21023223)
chr3 (66-122)||(44939400-44939456)
chr3 (66-105)||(27052309-27052348)
chr3 (43-122)||(23496354-23496434)
chr3 (43-122)||(26519701-26519781)
chr3 (100-144)||(29252102-29252146)
chr3 (66-122)||(35425394-35425450)
chr3 (66-122)||(48189426-48189482)
chr3 (43-122)||(50664795-50664875)
chr3 (111-151)||(51285717-51285757)
[»] chr8 (14 HSPs)
chr8 (13-150)||(24297548-24297685)
chr8 (19-144)||(8130066-8130191)
chr8 (10-149)||(3619026-3619165)
chr8 (85-151)||(3465395-3465461)
chr8 (43-144)||(36779436-36779537)
chr8 (37-151)||(22552695-22552810)
chr8 (100-151)||(39219809-39219860)
chr8 (100-150)||(2071539-2071589)
chr8 (102-144)||(6065393-6065435)
chr8 (100-142)||(37667037-37667079)
chr8 (67-144)||(32597866-32597943)
chr8 (101-150)||(43024963-43025012)
chr8 (102-150)||(8702364-8702412)
chr8 (43-110)||(23018141-23018209)
[»] chr4 (20 HSPs)
chr4 (19-150)||(54683387-54683518)
chr4 (13-151)||(3652669-3652792)
chr4 (100-156)||(1616539-1616595)
chr4 (100-148)||(17897795-17897843)
chr4 (43-156)||(40286304-40286417)
chr4 (100-149)||(54487192-54487241)
chr4 (19-115)||(19599487-19599583)
chr4 (100-144)||(22699807-22699851)
chr4 (100-144)||(46958088-46958132)
chr4 (22-93)||(54487233-54487305)
chr4 (100-151)||(5025608-5025659)
chr4 (40-122)||(48550236-48550319)
chr4 (85-151)||(4649884-4649950)
chr4 (85-122)||(48407573-48407610)
chr4 (43-122)||(16566327-16566407)
chr4 (100-144)||(22980679-22980723)
chr4 (43-122)||(29149291-29149371)
chr4 (66-122)||(32238043-32238099)
chr4 (43-122)||(39636807-39636887)
chr4 (110-150)||(53158833-53158873)
[»] chr7 (12 HSPs)
chr7 (18-149)||(46285285-46285416)
chr7 (24-107)||(37886768-37886851)
chr7 (36-144)||(2839342-2839450)
chr7 (38-107)||(45823259-45823329)
chr7 (40-144)||(47217490-47217595)
chr7 (113-152)||(597825-597864)
chr7 (40-122)||(41715712-41715795)
chr7 (100-144)||(31515988-31516032)
chr7 (100-144)||(33936770-33936814)
chr7 (100-144)||(40491728-40491772)
chr7 (43-150)||(42752134-42752242)
chr7 (43-122)||(48459768-48459848)
[»] chr1 (25 HSPs)
chr1 (19-151)||(25061263-25061396)
chr1 (43-154)||(4347035-4347146)
chr1 (100-149)||(5167381-5167430)
chr1 (85-150)||(29441288-29441353)
chr1 (100-144)||(213172-213216)
chr1 (43-122)||(20800262-20800342)
chr1 (43-122)||(35569187-35569267)
chr1 (100-151)||(7765240-7765291)
chr1 (40-122)||(27801637-27801720)
chr1 (67-122)||(45710134-45710189)
chr1 (85-151)||(7826310-7826376)
chr1 (100-150)||(34571082-34571132)
chr1 (43-132)||(40229445-40229535)
chr1 (100-150)||(40352509-40352559)
chr1 (68-150)||(47123473-47123555)
chr1 (112-153)||(184924-184965)
chr1 (46-122)||(5410703-5410780)
chr1 (46-122)||(13056061-13056138)
chr1 (66-122)||(10470674-10470730)
chr1 (111-151)||(11049421-11049461)
chr1 (43-150)||(12247481-12247588)
chr1 (100-144)||(22548190-22548234)
chr1 (68-144)||(36447640-36447715)
chr1 (66-150)||(43541579-43541662)
chr1 (85-125)||(46033128-46033168)
[»] chr6 (9 HSPs)
chr6 (43-150)||(5584005-5584112)
chr6 (19-150)||(21254835-21254966)
chr6 (85-151)||(15151460-15151526)
chr6 (44-151)||(3605707-3605814)
chr6 (66-122)||(6208047-6208103)
chr6 (47-150)||(26274583-26274686)
chr6 (111-144)||(10755400-10755433)
chr6 (68-124)||(29409233-29409289)
chr6 (19-122)||(33898989-33899093)
[»] scaffold0172 (1 HSPs)
scaffold0172 (100-150)||(15214-15264)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 111 - 380
Target Start/End: Original strand, 37561834 - 37562104
Alignment:
Q  111 tcaaaatcaa-tttttatcaccgcagaaccaaacaaacactttgtaacttctacaaatcacaacaccatcgtgattttgtcaaactcggcatgatttcaa 209  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37561834 tcaaaatcaagtttttatcaccgcagaaccaaacaaacactttgtaacttctacaaatcacaacaccatcgtgattttgtcaaactcggcatgatttcaa 37561933  T
Q  210 acatgcacttagttaaagaacaagttgaactagtccaatgatatcagttttgtagttatttggttgtatgattaaattcatccattcaaacggttgatac 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37561934 acatgcacttagttaaagaacaagttgaactagtccaatgatatcagttttgtagttatttggttgtatgattaaattcatccattcaaaccgttgatac 37562033  T
Q  310 aggcagagcaggtatggaaacattgtaggaaagaaatgataaagaggaataatgatatcaatgaatttgat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37562034 aggcagagcaggtatggaaacattgtaggaaagaaatgataaagaggaatcatgatatcaatgaatttgat 37562104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 25747967 - 25747837
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatc 118  Q
    ||||||||||||| |  ||| || |||||||||||||| |||| || ||||||||||||| |||  |||||||||  ||| | |||||||||||||| ||    
T  25747967 taagaatcaattttaggttattgtatccaaacataaatcaattacattcaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaactc 25747868  T
Q  119 aatttttatcaccgcagaaccaaacaaacac 149  Q
    |||| | | |||||| |||||||||| ||||    
T  25747867 aattatcaccaccgcggaaccaaacacacac 25747837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 43858298 - 43858194
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatt--tcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaa 116  Q
    ||||||||| ||||| | |||||||||||||||||||| ||||  ||| ||||||||||||||  |  |||||||||| | | |||||||||||||||||    
T  43858298 taagaatcactttcacaataatgcatccaaacataaatcaattattca-tcaactcacttttgcccaaaatcaattcaattaaaatcaattctatcaaaa 43858200  T
Q  117 tcaatt 122  Q
    ||||||    
T  43858199 tcaatt 43858194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 3853922 - 3854026
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaat 117  Q
    ||||||||||||| | || |||| |||||||||||||| ||||| || ||||||||||||| |||  |||||||||  ||| ||||||||| |||||| |    
T  3853922 taagaatcaattttacatgaatgtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaatcaattccatcaaact 3854021  T
Q  118 caatt 122  Q
    |||||    
T  3854022 caatt 3854026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 8041322 - 8041432
Alignment:
Q  40 tgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaacc 139  Q
    ||||||||||||||||| |||| || |||| ||||||||  ||  |||||||||  ||| | ||||||||||||||  |||||||||||| |||| ||||    
T  8041322 tgcatccaaacataaatcaattacattcaattcacttttattcaaaatcaattctctcaaactcaattctatcaaacacaatttttatca-cgcataacc 8041420  T
Q  140 aaacaaacactt 151  Q
    ||||| ||||||    
T  8041421 aaacagacactt 8041432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 34433368 - 34433266
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||||| ||||  || ||||||||||||| |||  |||||||||  ||| | ||||||||||||||||||||| |  ||||||| |||||||    
T  34433368 atccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctgtcaaactcaattctatcaaaatcaattctcttcaccgctgaaccaa 34433269  T
Q  142 aca 144  Q
    |||    
T  34433268 aca 34433266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 12110977 - 12111028
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| ||||||    
T  12110977 aatcaattctatcaaaatcaattttcgtcaccgcacaaccaaacacacactt 12111028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 3602479 - 3602415
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacac 149  Q
    |||||||||  ||| |||||||||  | |||||||||||| ||||||||||||||||||| ||||    
T  3602479 aatcaattctatcaaaatcaattcagtaaaaatcaattttcatcaccgcagaaccaaacacacac 3602415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 36548272 - 36548359
Alignment:
Q  69 actcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactttgtaa 156  Q
    |||||||||| |||  |||||||||  ||| | ||||||||||||||||||||||| | ||||||   |||||||| |||||| ||||    
T  36548272 actcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccaccgccataccaaacacacacttagtaa 36548359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 23267383 - 23267317
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||| ||| | |||||||||||||||||||||    ||||||||||||||| || ||||||    
T  23267383 aatcaattcactcaaactcaattctatcaaaatcaattccactcaccgcagaaccaaccacacactt 23267317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 3476378 - 3476329
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacac 149  Q
    |||||||||  | ||||||||||||| ||||| |||||||||||||||||    
T  3476378 aatcaattcacttaaaatcaatttttgtcaccacagaaccaaacaaacac 3476329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 26806317 - 26806209
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||||| | ||| |||||||||||||||| |||  ||||||||| |  | ||| ||||| | ||||||||||| || |||||||  ||||||    
T  26806317 atccaaacataaatcacttttcactcaactcacttttaatcaaaatcaattc-tgtaaaattaattcaaccaaaatcaattattgtcaccgcgtaaccaa 26806219  T
Q  142 acaaacactt 151  Q
    ||| ||||||    
T  26806218 acacacactt 26806209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 31224769 - 31224826
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaa 142  Q
    ||||||||| |||| | |||||||||||||||||||||||  |||||||  |||||||    
T  31224769 aatcaattctttcaaactcaattctatcaaaatcaattttcgtcaccgccaaaccaaa 31224826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 37745833 - 37745784
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacac 149  Q
    |||||||||  |||||||||||| ||||||||||| ||||||||| ||||    
T  37745833 aatcaattcactcaaaatcaattattatcaccgcaaaaccaaacatacac 37745784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 1945101 - 1945021
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  1945101 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatt 1945021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 2213552 - 2213632
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  2213552 atccaaacataaatcaattcacattcaactcactttttagcaaaatcaattctctcaaactcaattctatcaaaatcaatt 2213632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 44619123 - 44619043
Alignment:
Q  43 atccaaacataaattaatttcactcaa-ctcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| |||| | ||||| ||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  44619123 atccaaacataaatcaattcccctcaaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatt 44619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 3747684 - 3747544
Alignment:
Q  10 atacattactaagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattct 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3747684 atacattactaagaatcactttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattct 3747585  T
Q  110 atcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  3747584 atcaaaatcaatttttatcaccgcataaccaaacacacact 3747544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 7178805 - 7178937
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatc 118  Q
    ||||||||||||| |  ||| || |||||||||||||| |||| || |||||||||||||  ||  ||| |||||  ||| | |||||||||||||| ||    
T  7178805 taagaatcaattttaggttattgtatccaaacataaatcaattacattcaactcacttttagtcaaaattaattctctcaaactcaattctatcaaactc 7178904  T
Q  119 aatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||| | |||| ||| |||||||||| ||||||    
T  7178905 aattatcatcatcgccgaaccaaacacacactt 7178937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 35847908 - 35847843
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||| ||| | ||||||||||||||||||||| |  |||||||||||||||||| |||||    
T  35847908 aatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaaccaaacacacact 35847843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 22482240 - 22482320
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| |||||||||||||||||||||||    
T  22482240 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaatt 22482320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 2694797 - 2694719
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||||||| | |  |||||||||| ||| ||||||||||  ||||||||||| |  |||||||| |||||||||    
T  2694797 tcaactcacttttaaccaaaatcaattcaatcaaaatcaattctgacaaaatcaattctcgtcaccgcataaccaaaca 2694719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 7715017 - 7715082
Alignment:
Q  68 aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgc 133  Q
    ||||||||||| | |  |||||||||  ||| | ||||||||||||||||||||||||| ||||||    
T  7715017 aactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatttttaccaccgc 7715082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 3667905 - 3667985
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  3667905 atccaaacataaatcaattcacattcaactcactttttaacaaaatcaattctctcaaactcaattctatcaaaatcaatt 3667985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 13253120 - 13253064
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| | |  ||||||||| |||| | |||||||||||||||||||||    
T  13253120 tcaactcacttttaaccaaaatcaattctttcaaactcaattctatcaaaatcaatt 13253064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 35760240 - 35760320
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  35760240 atccaaacataaatcaattcacattcaactcactttttagcaaaatcaattctctcaaactcaattctatcaaaatcaatt 35760320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 37698486 - 37698345
Alignment:
Q  10 atacattactaagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattct 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698486 atacattactaagaatcactttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattct 37698387  T
Q  110 atcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||| |||||||||||| |||||| |||||| ||||||    
T  37698386 atcaaaattaatttttatcacagcagaaacaaacacacactt 37698345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 52813295 - 52813360
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||| ||| | |||||||||||||||||||||||  |||||||||||||||||| |||||    
T  52813295 aatcaattcactcaaactcaattctatcaaaatcaattttactcaccgcagaaccaaacacacact 52813360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 49526757 - 49526631
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaat 117  Q
    ||||||||||||| | || |||| |||||||||||||| ||||| || |||| |||||||| |||  |||||||||  ||| ||||||||  |||||| |    
T  49526757 taagaatcaattttacatgaatgtatccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaattctatcaaaatcaatttcatcaaact 49526658  T
Q  118 caatttttatcaccgcagaaccaaaca 144  Q
    ||||| ||   ||||||||||||||||    
T  49526657 caattcttgctaccgcagaaccaaaca 49526631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 21023223 - 21023172
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    ||||||||||||||||||||||| |||||||| || ||||||||| ||||||    
T  21023223 aatcaattctatcaaaatcaattattatcaccacacaaccaaacacacactt 21023172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 44939456 - 44939400
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| |||  |||||||||| ||| | |||||||||||||||||||||    
T  44939456 tcaactcacttttaatcaaaatcaattcactcaaattcaattctatcaaaatcaatt 44939400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 27052309 - 27052348
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaa 105  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  27052309 tcaactcacttttgatcagaatcaattcattcaaaatcaa 27052348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 23496354 - 23496434
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  23496354 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatt 23496434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 26519701 - 26519781
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  26519701 atccaaacataaatcaattcacattcaactcactttttagcaaaatcaattctctcaaactcaattctatcaaaatcaatt 26519781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 29252146 - 29252102
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||| ||||||||||||||||| | | |||||||||||||    
T  29252146 aatcaattcaatcaaaatcaatttttaccgctgcagaaccaaaca 29252102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 35425394 - 35425450
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| |||  |||||||||  ||| | |||||||||||||||||||||    
T  35425394 tcaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaatt 35425450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 48189482 - 48189426
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| |||  |||||||||  ||| | |||||||||||||||||||||    
T  48189482 tcaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaatt 48189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 50664795 - 50664875
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  50664795 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatt 50664875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 51285717 - 51285757
Alignment:
Q  111 tcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  51285717 tcaaaatcaatttttctcaccgcaaaaccaaacacacactt 51285757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 24297685 - 24297548
Alignment:
Q  13 cattactaagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatc 112  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  24297685 cattactaagaatcactttcatattaatgcatccaaatataaattaatttcactcaactcacttttgattcgaatcaattcattcaaaatcaattctatc 24297586  T
Q  113 aaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  24297585 aaaattaatttttatcaccgcagaaccaaacacacact 24297548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 8130191 - 8130066
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatc 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||    
T  8130191 taagaatcactttcatattaatgcatccaaacataaattaatttcactcaactcactttaaattcgaatcaattcattcaaaatcaattctatcaaaatc 8130092  T
Q  119 aatttttatcaccgcagaaccaaaca 144  Q
    |||||||||||||||||||| |||||    
T  8130091 aatttttatcaccgcagaactaaaca 8130066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 3619165 - 3619026
Alignment:
Q  10 atacattactaagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattct 109  Q
    |||||||  ||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  3619165 atacattgataagaatcactttcatattaatgtatccaaacacaaatcaatttcactcaactcacttttgatcagaatcaattcattcaaaatcaattct 3619066  T
Q  110 atcaaaatcaatttttatcaccgcagaaccaaacaaacac 149  Q
    |||||||||||||||||| ||||| |||||||||| ||||    
T  3619065 atcaaaatcaatttttatgaccgcggaaccaaacacacac 3619026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 3465461 - 3465395
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||| ||| | ||||||||||||||||||||| |  |||||||||||||||||| ||||||    
T  3465461 aatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaaccaaacacacactt 3465395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 36779436 - 36779537
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||||||| ||| || ||||||||||||| |||  ||||||||| | || |||||||| |||||||||||||| |  |||||||| ||||||    
T  36779436 atccaaacataaattactttacattcaactcacttttaatcaaaatcaattc-tacaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaa 36779534  T
Q  142 aca 144  Q
    |||    
T  36779535 aca 36779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 22552810 - 22552695
Alignment:
Q  37 taatgcatccaaacataaattaatttcac-tcaactcacttttgatccgaa-tcaattcattcacaatcaattctatcaaaatcaatttttatcaccgca 134  Q
    |||||||||||||||||||| |||||  | ||||||||||||| |||| || |||||||| | | |||||||| | |||||||||||| |  |||| |||    
T  22552810 taatgcatccaaacataaatcaattttccatcaactcactttt-atccaaaatcaattcaattaaaatcaattatgtcaaaatcaattatactcacagca 22552712  T
Q  135 gaaccaaacaaacactt 151  Q
     ||||||||| ||||||    
T  22552711 taaccaaacatacactt 22552695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 39219809 - 39219860
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||||||||||| |||||||  ||||||| ||||||||| ||||||    
T  39219809 aatcaattctatcaaaattaattttttccaccgcacaaccaaacacacactt 39219860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 2071589 - 2071539
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||| |||||||||||| | ||| ||||||||||||||| |||||    
T  2071589 aatcaattctgtcaaaatcaattctcatcgccgcagaaccaaacacacact 2071539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 6065393 - 6065435
Alignment:
Q  102 tcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    |||||||||||||| | |||||||||||||||| |||||||||    
T  6065393 tcaattctatcaaatttaatttttatcaccgcataaccaaaca 6065435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 37667079 - 37667037
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaa 142  Q
    ||||||||||||||||||||||||||  ||||||| |||||||    
T  37667079 aatcaattctatcaaaatcaatttttcccaccgcacaaccaaa 37667037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 32597943 - 32597866
Alignment:
Q  67 caactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    |||||||||||||| |  |||||||||  ||| |||||||| | ||||| |||||||||  ||||||| |||||||||    
T  32597943 caactcacttttgaccgaaatcaattctatcaaaatcaattttctcaaactcaatttttgccaccgcataaccaaaca 32597866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 43024963 - 43025012
Alignment:
Q  101 atcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||| |||||||||||||||| |||||||| | ||||||| |||||    
T  43024963 atcaattcaatcaaaatcaatttttgtcaccgcaaacccaaacatacact 43025012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 8702412 - 8702364
Alignment:
Q  102 tcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||||||||||||||||   ||||| ||||||||||| |||||    
T  8702412 tcaattctatcaaaatcaattttatccaccgtagaaccaaacatacact 8702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 23018141 - 23018209
Alignment:
Q  43 atccaaacataaattaatttc-actcaactcacttttgatccgaatcaattcattcacaatcaattcta 110  Q
    |||||||||||||| |||||  |||||||||||||||||||  |||||||||  ||| | |||||||||    
T  23018141 atccaaacataaataaatttatactcaactcacttttgatcaaaatcaattcgatcaaactcaattcta 23018209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 54683387 - 54683518
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatc 118  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||| || ||||||||||||||| |||||||||||||||||||    
T  54683387 taagaatcactttcatattaatgcatccaaacaaaaaataatttcactcaactcgcttttggtcggaatcaattcattcaaaatcaattctatcaaaatc 54683486  T
Q  119 aatttttatcaccgcagaaccaaacaaacact 150  Q
    ||||||| |||||||||||||||||| |||||    
T  54683487 aatttttttcaccgcagaaccaaacacacact 54683518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 3652669 - 3652792
Alignment:
Q  13 cattactaagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatc 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||               |||||||||||||    
T  3652669 cattactaagaatcactttcatattaatgcatccaaacataaattaatttcactcaactcacttttgattcg---------------aatcaattctatc 3652753  T
Q  113 aaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  3652754 aaaatcaatttttatcaccgcagaaccaaacacacactt 3652792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 1616539 - 1616595
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactttgtaa 156  Q
    ||||||||||||||||||||||| |  |||||||| |||||||||||||||| ||||    
T  1616539 aatcaattctatcaaaatcaattctattcaccgcacaaccaaacaaacacttagtaa 1616595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 17897843 - 17897795
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaaca 148  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  17897843 aatcaattcactcaaaatcaatttttgtcaccgcagaaccaaacaaaca 17897795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 40286304 - 40286417
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||||| | ||| ||||||||||| |||| |||  |||||||||  | | ||||| |||||||||||||||||||   ||||||| ||||||    
T  40286304 atccaaacataaatcatttttcactcaactcaattttaatcaaaatcaattctat-agaatcagttctatcaaaatcaattttgtccaccgcacaaccaa 40286402  T
Q  142 acaaacactttgtaa 156  Q
    ||| |||||| ||||    
T  40286403 acacacacttagtaa 40286417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 54487241 - 54487192
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacac 149  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  54487241 aatcaattctatcaaactcaatttttatcatcgcataaccaaacacacac 54487192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 19599583 - 19599487
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaa 115  Q
    ||||||||||||| |  | | ||||||||||||||||| |||| || |||||||||||||  ||  |||||||||  ||| | ||||||||||||||    
T  19599583 taagaatcaattttaagtaattgcatccaaacataaatcaattacattcaactcacttttattcaaaatcaattctctcaaactcaattctatcaaa 19599487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 22699807 - 22699851
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||    
T  22699807 aatcaattctaccaaaatcaatttttttcaccgcacaaccaaaca 22699851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 46958088 - 46958132
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||    
T  46958088 aatcaattctatcaaaatcaattttttccaccgcacaaccaaaca 46958132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 54487305 - 54487233
Alignment:
Q  22 gaatcaatttcatattaatgcatccaaacataaattaattt-cactcaactcacttttgatccgaatcaattc 93  Q
    |||||| ||||| || |||| |||||||||||||| ||||| || |||||||||||||||||  |||||||||    
T  54487305 gaatcactttcacatcaatgtatccaaacataaatcaatttacattcaactcacttttgatcgaaatcaattc 54487233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 5025608 - 5025659
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    ||||||||| |||||||||||||||  |||||||| ||||||||| ||||||    
T  5025608 aatcaattcaatcaaaatcaattttagtcaccgcataaccaaacacacactt 5025659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 48550236 - 48550319
Alignment:
Q  40 tgcatccaaacataaattaatttcactc-aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||||||| |||||   || ||||||||||| |||  |||||||||  | | |||||||||||||||||||||||    
T  48550236 tgcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaatt 48550319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 4649950 - 4649884
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||| ||| | |||||| |||||||||||||| |  ||||| |||||||||||| ||||||    
T  4649950 aatcaattcactcaaactcaattttatcaaaatcaattctactcaccacagaaccaaacacacactt 4649884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 48407573 - 48407610
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||  |||||||||||||||||||||||||||    
T  48407573 aatcaattctgtcacaatcaattctatcaaaatcaatt 48407610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 16566327 - 16566407
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  16566327 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatt 16566407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 22980723 - 22980679
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||||| |||||||||||||| ||||| || |||||||||    
T  22980723 aatcaattctaccaaaatcaatttttttcaccacacaaccaaaca 22980679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 29149371 - 29149291
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  29149371 atccaaacataaatcaattcacattcaactcactttttagcaaaatcaattctctcaaactcaattctatcaaaatcaatt 29149291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 32238099 - 32238043
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| | |  |||||||||| ||| | |||||||||||||||||||||    
T  32238099 tcaactcacttttaaccaaaatcaattcactcaaactcaattctatcaaaatcaatt 32238043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 39636807 - 39636887
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  ||  |||||||||||| |||  |||||||||  ||| | |||||||||||||||||||||    
T  39636807 atccaaacataaatcaattcacatccaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaatt 39636887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 53158873 - 53158833
Alignment:
Q  110 atcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||||||||| |||| ||||||||||||| |||||    
T  53158873 atcaaaatcaatttttgtcacagcagaaccaaacacacact 53158833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 46285416 - 46285285
Alignment:
Q  18 ctaagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaat 117  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||| ||||||||| ||||| |||||||| |||||||||    
T  46285416 ctaagaatcactttcatattaatgtatccaaacataaattaatttcactcaattcatttttaatcagaatcaattaattcaaaatcaattatatcaaaat 46285317  T
Q  118 caatttttatcaccgcagaaccaaacaaacac 149  Q
    ||||||||||||||||| |||||||| |||||    
T  46285316 caatttttatcaccgcataaccaaacgaacac 46285285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 37886851 - 37886768
Alignment:
Q  24 atcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaatt 107  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||||||  |||||||  ||||||||||||||| ||| ||||    
T  37886851 atcactttcatattaatgcatccaaacaaaaaataatttcactcaactcgtttttgattggaatcaattcattcaaaattaatt 37886768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 2839342 - 2839450
Alignment:
Q  36 ttaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcag 135  Q
    |||||| |||||||||||||| |||||   ||||||||||||| ||   |||| ||||  ||| ||||||||| |||| ||||||||||  ||||||||     
T  2839342 ttaatgaatccaaacataaatcaatttagttcaactcacttttcataaaaatctattctatcaaaatcaattcaatcataatcaattttcgtcaccgcat 2839441  T
Q  136 aaccaaaca 144  Q
    |||||||||    
T  2839442 aaccaaaca 2839450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 45823259 - 45823329
Alignment:
Q  38 aatgcatccaaacataaatta-atttcactcaactcacttttgatccgaatcaattcattcacaatcaatt 107  Q
    |||| |||||||||||||| | |||||| |||||||||||||||||  |||||||||| ||| ||||||||    
T  45823259 aatgtatccaaacataaatcacatttcattcaactcacttttgatcgaaatcaattcaatcaaaatcaatt 45823329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 47217595 - 47217490
Alignment:
Q  40 tgcatccaaacataaattaatttcac-tcaa-ctcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaa 137  Q
    ||||||||||||||||| |||| ||| |||| ||||||||| |||  |||||||||  ||| | ||||||||||||||||||||||| | | |||| |||    
T  47217595 tgcatccaaacataaatcaatt-cacatcaaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccgccgccgaa 47217497  T
Q  138 ccaaaca 144  Q
    |||||||    
T  47217496 ccaaaca 47217490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 597864 - 597825
Alignment:
Q  113 aaaatcaatttttatcaccgcagaaccaaacaaacacttt 152  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  597864 aaaatcaaattttatcaccgcagaaccaaacatacacttt 597825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 41715712 - 41715795
Alignment:
Q  40 tgcatccaaacataaattaatttcactc-aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||||||| |||||   || ||||||||||| |||  |||||||||  | | |||||||||||||||||||||||    
T  41715712 tgcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaatt 41715795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 31515988 - 31516032
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    |||||||||  ||||||||||| ||||||| ||||||||||||||    
T  31515988 aatcaattcattcaaaatcaatatttatcagcgcagaaccaaaca 31516032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 33936814 - 33936770
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||||| ||||||||||||||  ||||||| |||||||||    
T  33936814 aatcaattctaccaaaatcaattttttccaccgcacaaccaaaca 33936770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 40491728 - 40491772
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    |||||||||  |||||||||||| || ||||||||||||||||||    
T  40491728 aatcaattcactcaaaatcaattcttgtcaccgcagaaccaaaca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 42752242 - 42752134
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||||| ||||  || ||||||||||||| |    |||||||||   || |||||||||| |||||||||||| |   ||||||||||||||    
T  42752242 atccaaacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaattatctccaccgcagaaccaa 42752143  T
Q  142 acaaacact 150  Q
    ||| |||||    
T  42752142 acacacact 42752134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 48459768 - 48459848
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| | |||||||||||||||||||||    
T  48459768 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattctatcaaaatcaatt 48459848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 25061263 - 25061396
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaat 117  Q
    ||||||||| ||| || |||| | |||||||||||||| |||||    ||||||||||||| | |  ||||||||||  || |||||||| || ||||||    
T  25061263 taagaatcacttttatgttaaggtatccaaacataaatcaatttatgttcaactcacttttaaccaaaatcaattcaaccaaaatcaattttaacaaaat 25061362  T
Q  118 caatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||| |||||||||||||||||| ||||||    
T  25061363 caatttttgtcaccgcagaaccaaacacacactt 25061396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 4347035 - 4347146
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||||| | ||| || ||||||||||||| | |  ||||||||| | || ||||||||||| ||||||||||||||  ||||||| ||||||    
T  4347035 atccaaacataaatcactttacattcaactcacttttaaccaaaatcaattc-tacaaaatcaattctaccaaaatcaattttttccaccgcacaaccaa 4347133  T
Q  142 acaaacactttgt 154  Q
    ||| || ||||||    
T  4347134 acacacgctttgt 4347146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 5167381 - 5167430
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacac 149  Q
    |||||||||  |||||||||||||| ||||||||||||||||||| ||||    
T  5167381 aatcaattcattcaaaatcaattttcatcaccgcagaaccaaacacacac 5167430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 29441288 - 29441353
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||| ||| | ||||||||||||||||||||| |  ||||||||||| |||||| |||||    
T  29441288 aatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaatcaaacacacact 29441353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 213216 - 213172
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||  |||||||||||||||| ||||||||||||||||||    
T  213216 aatcaatttaatcaaaatcaatttttgtcaccgcagaaccaaaca 213172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 20800342 - 20800262
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| |||||||||||||||||||||||    
T  20800342 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaatt 20800262  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 35569267 - 35569187
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||||| ||||  || ||||||||||||| | |  |||||||||  ||| |||||||||||||||||||||||    
T  35569267 atccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattctatcaaaatcaatt 35569187  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 7765291 - 7765240
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    ||||||||||||||||||||||| |  |||||||| ||||||||| ||||||    
T  7765291 aatcaattctatcaaaatcaattctcgtcaccgcataaccaaacacacactt 7765240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 27801720 - 27801637
Alignment:
Q  40 tgcatccaaacataaattaatttcactc-aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||||||| |||||   || ||||||||||| |||  |||||||||  | | |||||||||||||||||||||||    
T  27801720 tgcatccaaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattctatcaaaatcaatt 27801637  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 45710134 - 45710189
Alignment:
Q  67 caactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    |||||||||||| |||  |||||||||| ||| | |||||||||||||||||||||    
T  45710134 caactcacttttaatcaaaatcaattcactcaaactcaattctatcaaaatcaatt 45710189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 7826376 - 7826310
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||  ||| |||||||||||||||||||||||||   ||||||  ||||||||| ||||||    
T  7826376 aatcaattctctcaaaatcaattctatcaaaatcaattttctccaccgccaaaccaaacacacactt 7826310  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 34571132 - 34571082
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||| ||| ||||||||||||| |||||||| ||||||||| |||||    
T  34571132 aatcaattttatgaaaatcaatttttgtcaccgcataaccaaacacacact 34571082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 40229535 - 40229445
Alignment:
Q  43 atccaaacataaattaatttcactcaa-ctcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccg 132  Q
    |||||||||||||| ||||   ||||| ||||||||| | |  |||||||||   || ||||||||||||||||||||||||| |||||||    
T  40229535 atccaaacataaatcaattcacctcaaactcacttttaaccaaaatcaattccaacaaaatcaattctatcaaaatcaattttcatcaccg 40229445  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 40352509 - 40352559
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    ||||||||||||||||||||||| |  |||||||| ||||||||| |||||    
T  40352509 aatcaattctatcaaaatcaattctcctcaccgcacaaccaaacacacact 40352559  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 47123473 - 47123555
Alignment:
Q  68 aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    ||||||||||| |||  |||||||||  ||| | ||||||||||||||||||||||||  ||||||   |||||||| |||||    
T  47123473 aactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaatttttgccaccgccataccaaacacacact 47123555  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 184965 - 184924
Alignment:
Q  112 caaaatcaatttttatcaccgcagaaccaaacaaacactttg 153  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  184965 caaaatcattttttgtcaccgcagaaccaaacaaacattttg 184924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 5410703 - 5410780
Alignment:
Q  46 caaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||| ||||| ||  |||||||||||| |||  ||||||||| |||| | |||||| ||||||||||||||    
T  5410703 caaacataaatcaatttacatccaactcacttttaatcaaaatcaattctttcaaattcaattatatcaaaatcaatt 5410780  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 13056061 - 13056138
Alignment:
Q  46 caaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||| ||||  |||||||||||||||| | |  ||||||||| |||| | || ||||||||||||||||||    
T  13056061 caaacataaatcaattcacactcaactcacttttaaccaaaatcaattctttcaaactccattctatcaaaatcaatt 13056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 10470674 - 10470730
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| |||  |||||||||  ||| | |||||||||||||||||||||    
T  10470674 tcaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaatt 10470730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 11049421 - 11049461
Alignment:
Q  111 tcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||||| |||||||| |||||||||||| ||||||    
T  11049421 tcaaaatcaattattatcaccacagaaccaaacatacactt 11049461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 12247481 - 12247588
Alignment:
Q  43 atccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaa 141  Q
    |||||||||||| ||||||| ||  |||||||||||| | | ||||||||||  | | | |||||||||| |||||||||||| ||||||||   |||||    
T  12247481 atccaaacataa-ttaatttacatccaactcacttttaaccagaatcaattctcttaaactcaattctattaaaatcaattttcatcaccgctataccaa 12247579  T
Q  142 acaaacact 150  Q
    ||| |||||    
T  12247580 acacacact 12247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 22548234 - 22548190
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    |||||||||  | |||||||||||||||||||||| |||||||||    
T  22548234 aatcaattcacttaaaatcaatttttatcaccgcaaaaccaaaca 22548190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 36447715 - 36447640
Alignment:
Q  68 aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    |||||||||||||||  ||||||||| | || ||| ||||| ||||||||||||||| | | || ||||||||||||    
T  36447715 aactcacttttgatcaaaatcaattc-tacaaaattaattcaatcaaaatcaattttcaccgccacagaaccaaaca 36447640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 43541662 - 43541579
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    ||||||||||||||||| |||  ||||  | || |||||||||  ||| ||||||||||| |||||||| ||||||||| |||||    
T  43541662 tcaactcacttttgatcagaacgaattt-tacagaatcaattcattcagaatcaatttttgtcaccgcataaccaaacacacact 43541579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 46033168 - 46033128
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaattttt 125  Q
    ||||||||| |||| |||||||||||||| |||||||||||    
T  46033168 aatcaattctttcaaaatcaattctatcagaatcaattttt 46033128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 5584112 - 5584005
Alignment:
Q  43 atccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaa 142  Q
    |||||||||||||| |||| || | |||||||||||  ||  |||||||||  ||| ||||||||||||||||||||||| |  ||||||||||||| ||    
T  5584112 atccaaacataaatcaattacattaaactcacttttagtcaaaatcaattctgtcaaaatcaattctatcaaaatcaattctcgtcaccgcagaacctaa 5584013  T
Q  143 caaacact 150  Q
    || |||||    
T  5584012 cacacact 5584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 21254966 - 21254835
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatc 118  Q
    ||||||||||||| |  ||| || |||||||||||||| |||| || ||||||||||||| |||  | |||||||  ||| | |||||||||||||| ||    
T  21254966 taagaatcaattttaggttattgtatccaaacataaatcaattacattcaactcacttttaatcaaattcaattctctcaaactcaattctatcaaactc 21254867  T
Q  119 aatttttatcaccgcagaaccaaacaaacact 150  Q
    |||| | | |||||  |||||||||| |||||    
T  21254866 aattatcaccaccgtggaaccaaacacacact 21254835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 15151526 - 15151460
Alignment:
Q  85 aatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacactt 151  Q
    |||||||||| ||| | ||||||||||||||||||||| |  |||||||||||||||||| ||||||    
T  15151526 aatcaattcactcaaactcaattctatcaaaatcaattctactcaccgcagaaccaaacacacactt 15151460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 3605814 - 3605707
Alignment:
Q  44 tccaaacataaattaattt-cactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaa 142  Q
    ||||||||||||| | ||| |||||||||||||||| |||  ||||||||| | || |||||||| ||||||||||||||||   |||| || |||||||    
T  3605814 tccaaacataaatcacttttcactcaactcacttttaatcaaaatcaattc-tacaaaatcaattatatcaaaatcaattttgtccaccacacaaccaaa 3605716  T
Q  143 caaacactt 151  Q
    || ||||||    
T  3605715 cacacactt 3605707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 6208103 - 6208047
Alignment:
Q  66 tcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatt 122  Q
    ||||||||||||| |||  |||||||||| ||| |||||||||||||||||||||||    
T  6208103 tcaactcacttttaatcaaaatcaattcactcaaaatcaattctatcaaaatcaatt 6208047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 26274686 - 26274583
Alignment:
Q  47 aaacataaattaatttcactcaactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaa 146  Q
    |||||||||  |||| || |||||||||||||  || |||||||||   ||| ||||||||||||||||||||||| |  |  ||||||||||||||| |    
T  26274686 aaacataaacgaattacattcaactcacttttagtcagaatcaattatgtcaaaatcaattctatcaaaatcaattctcgttgccgcagaaccaaacaca 26274587  T
Q  147 cact 150  Q
    ||||    
T  26274586 cact 26274583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 10755433 - 10755400
Alignment:
Q  111 tcaaaatcaatttttatcaccgcagaaccaaaca 144  Q
    ||||||||||||||| ||||||||||||||||||    
T  10755433 tcaaaatcaatttttgtcaccgcagaaccaaaca 10755400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 29409289 - 29409233
Alignment:
Q  68 aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaatcaatttt 124  Q
    ||||||||||| |||  ||||||||| |||| | |||||||||| ||||||||||||    
T  29409289 aactcacttttaatcaaaatcaattctttcaaactcaattctattaaaatcaatttt 29409233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 33899093 - 33898989
Alignment:
Q  19 taagaatcaatttcatattaatgcatccaaacataaattaatttcactc-aactcacttttgatccgaatcaattcattcacaatcaattctatcaaaat 117  Q
    ||||||||| ||| | |||| || |||||||||||||| ||||    || ||||||||||| |||  |||||||||  ||| | ||||||||||||||||    
T  33899093 taagaatcacttttacattagtgtatccaaacataaatcaattcatatcaaactcacttttaatcaaaatcaattctctcaaactcaattctatcaaaat 33898994  T
Q  118 caatt 122  Q
    |||||    
T  33898993 caatt 33898989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 15264 - 15214
Alignment:
Q  100 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacaaacact 150  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| |||||    
T  15264 aatcaattctatcaaaatcaattttcgtcaccgcacaaccaaacacacact 15214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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