View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7729_high_1 (Length: 816)
Name: NF7729_high_1
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7729_high_1 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 3898928 - 3898548
Alignment:
| Q |
14 |
cagagaggttgttgatgaggacgcggacggcgggggagtttaccggaacgtcggatccggtaccagagacggtagatccggtggtggttgatactggagg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3898928 |
cagagaggttgttgatgaggacgcggacggcgggggagtttaccggaacgtcggatccggtaccagagacggtggatccggtggtggttgatactggagg |
3898829 |
T |
|
| Q |
114 |
gacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggtttagagagagaaagtagttttgtgattttgtgaatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898828 |
gacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggtttagagagagaaagtagttttgtgattttgtgaatt |
3898729 |
T |
|
| Q |
214 |
gagattgaaggggtttttggtttttagagaaggtgaatttattgcttaatgattaaggtgaatgaattaagcaccgacgaaaatataagtagtaaagttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898728 |
gagattgaaggggtttttggtttttagagaaggtgaatttattgcttaatgattaaggtgaatgaattaagcaccgacgaaaatataagtagtaaagttt |
3898629 |
T |
|
| Q |
314 |
gtgggtatgaatgtgattggttatttgttgtcacgcttcgtttatgttacgttaacgtgtatgcggaaatatcgtggaagt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898628 |
gtgggtatgaatgtgattggttatttgttgtcacgcttcgtttatgttacgttaacgtgtatgcggaaatatcgtggaagt |
3898548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 482 - 800
Target Start/End: Complemental strand, 3898457 - 3898139
Alignment:
| Q |
482 |
ttcattagttttcaccnnnnnnnacctaaatcaatttaacttgtaatcattaatcaacatggagattagtccaatatcctcctctcacgnnnnnnnnnnn |
581 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3898457 |
ttcattagttttcacctttttttacctaaatcaatttaacttgtaatcattaatcatcatggagattagtccaatatcctcctctcacgaaaaaacaaaa |
3898358 |
T |
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| Q |
582 |
nnn-ggagattagtccaataaattgcagctcttgcaaggatccgaccaattatattcatttgtcattgaacacctgacctcaaacgctatgctannnnnn |
680 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
3898357 |
aaaaggagattagtccaataaattgcagctcttgcaaggatccgaccaattatattcatttgt-attgaacacctgacctcaaatgctatgctatttttt |
3898259 |
T |
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| Q |
681 |
naatatttttatagatgtcattaacctgttaattataataaattatactttatatattctcatttatatactaagaagcagaggaaaatatcaatcccat |
780 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898258 |
taatatttttatagatgtcattaacctgctaattataataaattatattttatatattctcatttatatactaagaagcagaggaaaatatcaatcccat |
3898159 |
T |
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| Q |
781 |
tttcaaccccgacaaggttg |
800 |
Q |
| |
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|||||||||||||||||||| |
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| T |
3898158 |
tttcaaccccgacaaggttg |
3898139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0562 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 177 - 1
Alignment:
| Q |
14 |
cagagaggttgttgatgaggacgcggacggcgggggagtttaccggaacgtcggatccggtaccagagacggtagatccggtggtggttgatactggagg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
177 |
cagagaggttgttgatgaggacgcggacggcgggggagtttaccggaacgtcggatccggtaccagagacggtggatccggtggtggttgatactggagg |
78 |
T |
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| Q |
114 |
gacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggtttagagagagaaa |
190 |
Q |
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| T |
77 |
gacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggtttagagagagaaa |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 81 - 192
Target Start/End: Original strand, 48755075 - 48755184
Alignment:
| Q |
81 |
gacggtagatccggtggtggttgatactggagggacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggttta |
180 |
Q |
| |
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|||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| |
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| T |
48755075 |
gacggtggatccggtggtggctgatggtggagggacggtggtg-cagggagaacgggtggtgcagaggacattgttgcgattg-ttgttgtaagggtttg |
48755172 |
T |
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| Q |
181 |
gagagagaaagt |
192 |
Q |
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|||||| ||||| |
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| T |
48755173 |
gagagataaagt |
48755184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 42247338 - 42247229
Alignment:
| Q |
81 |
gacggtagatccggtggtggttgatactggagggacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggttta |
180 |
Q |
| |
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|||||| || |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| |
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| T |
42247338 |
gacggtggacccggtggtggctgatggtggagggacggtggtg-cagggagaacgggtggtgcagaggacattgttgcgattg-ttgttgtaagggtttg |
42247241 |
T |
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| Q |
181 |
gagagagaaagt |
192 |
Q |
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|||||||||||| |
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| T |
42247240 |
gagagagaaagt |
42247229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 45384828 - 45384725
Alignment:
| Q |
81 |
gacggtagatccggtggtggttgatactggagggacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggttta |
180 |
Q |
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|||||| ||||||||||||| |||| |||||||||||| ||| |||||||||| |||||||||||||||| |||||| |||| ||||||||| ||||| |
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| T |
45384828 |
gacggtggatccggtggtggctgatggtggagggacggttgtg-cagggagaactggtggtgcagaggacattgttgcgattg-ttgttgtaagggtttg |
45384731 |
T |
|
| Q |
181 |
gagaga |
186 |
Q |
| |
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|||||| |
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| T |
45384730 |
gagaga |
45384725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 35633793 - 35633711
Alignment:
| Q |
108 |
tggagggacggtggtgacagggagaacgggtggtgcagaggacactgttgccattgtttgttgtaacggtttagagagagaaagt |
192 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| ||| |||||||| |
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| T |
35633793 |
tggagggacggtggtg-cagggagaacgggtggtgcagaggacattgttgcgattg-ttgttgtaagggtttggagtgagaaagt |
35633711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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