View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7729_high_2 (Length: 506)

Name: NF7729_high_2
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7729_high_2
NF7729_high_2
[»] chr2 (25 HSPs)
chr2 (12-506)||(9029908-9030400)
chr2 (19-246)||(8991916-8992143)
chr2 (327-474)||(9019601-9019746)
chr2 (12-246)||(8973079-8973314)
chr2 (17-138)||(8988327-8988452)
chr2 (12-132)||(8984575-8984695)
chr2 (34-138)||(8996231-8996339)
chr2 (19-132)||(9016375-9016488)
chr2 (12-117)||(9026683-9026788)
chr2 (12-117)||(9031950-9032055)
chr2 (140-246)||(9026536-9026643)
chr2 (140-246)||(9031803-9031910)
chr2 (12-119)||(8975590-8975697)
chr2 (166-246)||(8988193-8988272)
chr2 (140-264)||(9016222-9016345)
chr2 (17-113)||(9020748-9020844)
chr2 (140-222)||(8975455-8975536)
chr2 (140-246)||(9023171-9023276)
chr2 (12-101)||(8979235-8979324)
chr2 (140-246)||(9020606-9020710)
chr2 (12-92)||(9023369-9023449)
chr2 (269-325)||(9016146-9016203)
chr2 (140-213)||(8996134-8996206)
chr2 (79-119)||(9007963-9008003)
chr2 (249-314)||(9020153-9020216)
[»] chr1 (2 HSPs)
chr1 (140-246)||(33987813-33987918)
chr1 (12-138)||(33987943-33988072)
[»] chr8 (1 HSPs)
chr8 (333-384)||(44882936-44882987)
[»] chr6 (1 HSPs)
chr6 (366-414)||(1246171-1246220)


Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Complemental strand, 9030400 - 9029908
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 111  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030400 tgagttgaaagatgaacttgcttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 9030301  T
Q  112 tagactcttcctaacactttcttcctctattatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  9030300 tagactcttcctaacactttcttcctctattatcatcaatcagagtaaatagacacacataggccatcatgatgaattgtcaaaaaattaaattgatatt 9030201  T
Q  212 cttgtcttaaagccaaatatcacgatctgattcttgttggataatttatactagttcttctaagcataaat-aagaaacatacggaatgaaataaacaat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9030200 cttgtcttaaagccaaatatcacgatctgattcttgttggataatttatactagttcttctaagcataaataaagaaacatacggaatgaaataaacaat 9030101  T
Q  311 aataactcaagatctgaggaggtgcatttgcatgctgttgttgtgtatagtatacttgttcttgcttagctccatcatattcataatataaccataaata 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9030100 aataactcaagatctgaggaggtgcatttgcatgctgttgttgtgta---tatacttgtacttgcttagctccatcatattcataatataaccataaata 9030004  T
Q  411 ggctatggtggatgatgaataatttgatgttgaatcaaactcacatattgttgctaaaattgatgttgctgcttttggtgttgttagggtgaggtc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9030003 ggctatggtggatgatgaataatttgatgttgaatcaaactcacatattgttgctaaaattgatgttgctgcttttggtgttgttagggtgaggtc 9029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 8992143 - 8991916
Alignment:
Q  19 aaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttggtaga--c 116  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||| | |||||||| |  | |||||||||||| ||||||||| ||||||||||||  |    
T  8992143 aaagacgaactcgcttatgcttttatatatcacatcccttcacttactttcttgaataaccaatgtgggacttttttgaaacagtttgcttggtagactc 8992044  T
Q  117 tcttcctaacactttcttcctctattatcatcaatcagagtaactagacacacataggccatcatgatgacttg-ccaaaaaattaaattgatattcttg 215  Q
    ||||||||||||| |||| |||  ||   ||| |||||||||| || | |||||||||||||||| |||| |||    ||||||||||||||||||||||    
T  8992043 tcttcctaacactctctttctccttt---atcgatcagagtaaatacatacacataggccatcattatgaattgaagcaaaaattaaattgatattcttg 8991947  T
Q  216 tcttaaagccaaatatcacgatctgattctt 246  Q
    ||||||||| |||||||| ||||||||||||    
T  8991946 tcttaaagcaaaatatcatgatctgattctt 8991916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 327 - 474
Target Start/End: Complemental strand, 9019746 - 9019601
Alignment:
Q  327 aggaggtgcatttgcatgctgttgttgtgtatagtatacttgttcttgcttagctccatcatattcataatataaccataaataggctatggtggatgat 426  Q
    ||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||||||    
T  9019746 aggaggtgcatttgcatgctgctgttgtgggtagaatacttgttcttgcttagctccaccatattcata--ataaccataaaaaggctgtggtggatgat 9019649  T
Q  427 gaataatttgatgttgaatcaaactcacatattgttgctaaaattgat 474  Q
    ||||| |||||| ||||| |||||| ||||||||||||| ||||||||    
T  9019648 gaatattttgattttgaagcaaactaacatattgttgctgaaattgat 9019601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 8973314 - 8973079
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 111  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||| | |||| ||| | ||||||||| ||||| ||||||||| ||||||||    
T  8973314 tgagttgaaagatgaactcgcttatgcttttatatatcacatcccttcacttactttctggaataatcgatgtggaacttttttgaaacagtttgcttgg 8973215  T
Q  112 taga--ctcttcctaacactttc-ttcctctattatcatcaatcagagtaactagacacacataggccatcatgatgacttg-ccaaaaaattaaattga 207  Q
    ||||  |||||||||||||| ||  |||||  ||   ||| |||||||||| ||   |||||||||||| ||| |||| |||    ||||||||||||||    
T  8973214 tagactctcttcctaacactctcaatcctccttt---atcgatcagagtaaatacttacacataggccaccattatgaattgaagcaaaaattaaattga 8973118  T
Q  208 tattcttgtcttaaagccaaatatcacgatctgattctt 246  Q
    |||||||||||| |||| |||||||| ||||||||||||    
T  8973117 tattcttgtcttgaagcaaaatatcatgatctgattctt 8973079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 8988452 - 8988327
Alignment:
Q  17 tgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttggtagac 116  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  8988452 tgaaagatgaactcgcttatgcttttatatatcacatcccttcacttgctttcttgaacagtcgatgtgggactattttgaaacaacttgcttggtagac 8988353  T
Q  117 t--cttcct--aacactttcttcctc 138  Q
    |  ||||||  |||||||||||||||    
T  8988352 tcacttcctaaaacactttcttcctc 8988327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 8984695 - 8984575
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 111  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||  |||||||||||||| |||||| |||||| ||||    
T  8984695 tgagttgaaatatgaacttgcttatgcttttatatatcacatcccttcacttgttttcttgaacaaccgatgtgggacttttttgaaatagcttgtttgg 8984596  T
Q  112 tagactcttcctaacactttc 132  Q
    ||||||||||||||| |||||    
T  8984595 tagactcttcctaactctttc 8984575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 8996339 - 8996231
Alignment:
Q  34 tatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttggtaga--ctcttcct--aacact 129  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||||| |||||||||||||  ||||||||  ||||||    
T  8996339 tatgcttttatatatcacatcccttcagttgctttcttgaacagtcgatgtgggactattttgaaacaacttgcttggtagactctcttcctaaaacact 8996240  T
Q  130 ttcttcctc 138  Q
    |||||||||    
T  8996239 ttcttcctc 8996231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 9016488 - 9016375
Alignment:
Q  19 aaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttggtagactc 118  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||   |||||||||| |  |||||||||| |||||||||| |||    
T  9016488 aaagatgaactcgcttatgcttttatatatcacatcctttcacttgctttcttgaacaactgatgtgggacatctttgaaacagcatgcttggtagtctc 9016389  T
Q  119 ttcctaacactttc 132  Q
    ||||||||||||||    
T  9016388 ttcctaacactttc 9016375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 9026788 - 9026683
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 111  Q
    |||| ||||||||||| | | ||||||||||||||| ||||||||||||||||| ||||||||||  |||| ||||||||| ||||||||||||||||||    
T  9026788 tgagttgaaagatgaattcgcttatgcttttatataccacatcccttcacttgctttcttgaacaaccgatatgggacttttttgaaacagcttgcttgg 9026689  T
Q  112 tagact 117  Q
    ||||||    
T  9026688 tagact 9026683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 9032055 - 9031950
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 111  Q
    |||| ||||||||||| | | ||||||||||||||| ||||||||||||||||| |||||||||| ||||| || |||||| ||||||||||||||||||    
T  9032055 tgagttgaaagatgaattcgcttatgcttttatataccacatcccttcacttgctttcttgaacaatcgatatgagacttttttgaaacagcttgcttgg 9031956  T
Q  112 tagact 117  Q
    ||||||    
T  9031955 tagact 9031950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 9026643 - 9026536
Alignment:
Q  140 attatcatcaatcagagtaac--tagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgat 237  Q
    ||||||||||||||||||||   || |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  9026643 attatcatcaatcagagtaaaaatacacacacataggccatcgtgatgaattgccaaaaa-ttaaattgatattcttgtcttaaagcaaaatatcatgat 9026545  T
Q  238 ctgattctt 246  Q
    || ||||||    
T  9026544 cttattctt 9026536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 9031910 - 9031803
Alignment:
Q  140 attatcatcaatcagagtaac--tagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgat 237  Q
    ||||||||||||||||||||   || |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  9031910 attatcatcaatcagagtaaaaatacacacacataggccatcgtgatgaattgccaaaaa-ttaaattgatattcttgtcttaaagcaaaatatcatgat 9031812  T
Q  238 ctgattctt 246  Q
    || ||||||    
T  9031811 cttattctt 9031803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 8975697 - 8975590
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttgg 111  Q
    |||| |||||| || ||| | ||||||||||||||||||||||||||||||||  ||||| |||||| |||| |||||||| |||||||| |||||||||    
T  8975697 tgagttgaaagttggactcgcttatgcttttatatatcacatcccttcacttgatttcttaaacagttgatgggggacttttttgaaacaacttgcttgg 8975598  T
Q  112 tagactct 119  Q
    || |||||    
T  8975597 taaactct 8975590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 8988272 - 8988193
Alignment:
Q  166 acacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatctgattctt 246  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| || |||||||| ||||||||||||    
T  8988272 acacataggccatcatgatgaattgccaaaaa-taaaattgatattcttgtcttaaggcaaaatatcatgatctgattctt 8988193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 264
Target Start/End: Complemental strand, 9016345 - 9016222
Alignment:
Q  140 attatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatct 239  Q
    |||||||||||| ||||||| || | |||||| |||||  || |||| |||  |||||||||||||||||||||||||||| ||| |||||||| |||||    
T  9016345 attatcatcaattagagtaaatacatacacatgggccacgattatgaattga-aaaaaattaaattgatattcttgtcttatagcaaaatatcatgatct 9016247  T
Q  240 gattcttgttggataatttatacta 264  Q
    || |||| ||| |||||||||||||    
T  9016246 gactcttattgaataatttatacta 9016222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 9020844 - 9020748
Alignment:
Q  17 tgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaacagcttgcttggta 113  Q
    ||||||||||||| | ||||| ||||||||||||||||| ||||||||| ||| ||||||  |||||| ||||||| |||||| |||||||||||||    
T  9020844 tgaaagatgaactcgcttatggttttatatatcacatccattcacttgctttcatgaacaaccgatgtaggacttttttgaaatagcttgcttggta 9020748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 8975536 - 8975455
Alignment:
Q  140 attatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaa 222  Q
    |||||||||||||||||||| || | ||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||    
T  8975536 attatcatcaatcagagtaaatacatacacataggccatcatgatgaattgcc-aacaattaaattgatattctagtcttaaa 8975455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 9023276 - 9023171
Alignment:
Q  140 attatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatct 239  Q
    ||||| |||||||| ||||| || | |||| |||||||||| ||||| |||||||||| ||||||||||||||||| |||||||| || ||||| |||||    
T  9023276 attatgatcaatcatagtaaatacatacacctaggccatcacgatgaattgccaaaaa-ttaaattgatattcttgacttaaagcaaagtatcatgatct 9023178  T
Q  240 gattctt 246  Q
    |||||||    
T  9023177 gattctt 9023171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 8979324 - 8979235
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaaca 101  Q
    |||| ||||||||||||||| ||||||||||||||||||  ||||||||||||  | ||||||||  | |||||||||||| ||||||||    
T  8979324 tgagttgaaagatgaacttgcttatgcttttatatatcaagtcccttcacttgattccttgaacaaccaatgtgggacttttttgaaaca 8979235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 9020710 - 9020606
Alignment:
Q  140 attatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatct 239  Q
    |||||||||||||| ||||  || | |||||| ||||| |||| ||| |||||||||| ||||||||||||||| |||||||||| |||||||| ||||     
T  9020710 attatcatcaatcaaagtagatacatacacattggcca-catggtgaattgccaaaaa-ttaaattgatattctcgtcttaaagcaaaatatcatgatcg 9020613  T
Q  240 gattctt 246  Q
    |||||||    
T  9020612 gattctt 9020606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 9023449 - 9023369
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggacttt 92  Q
    |||| |||||| || ||| | |||||||||||||||||||||| |||||||||  ||||||||||  ||||||||||||||    
T  9023449 tgagttgaaagttggactcgcttatgcttttatatatcacatctcttcacttgatttcttgaacaaccgatgtgggacttt 9023369  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 9016203 - 9016146
Alignment:
Q  269 ttctaagcataaataa-gaaacatacggaatgaaataaacaataataactcaagatct 325  Q
    |||||||||||||||| |||||||| |||||||||||||||  |||||||||||||||    
T  9016203 ttctaagcataaataaagaaacatatggaatgaaataaacaccaataactcaagatct 9016146  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 8996206 - 8996134
Alignment:
Q  140 attatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatattct 213  Q
    |||||||||||||| ||||  || | | ||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  8996206 attatcatcaatcatagtagatacataaacataggccatcatggtgaattgcc-aaaaattaaattaatattct 8996134  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 9008003 - 9007963
Alignment:
Q  79 cgatgtgggactttcttgaaacagcttgcttggtagactct 119  Q
    |||||||||||||| |||||| ||||||||||||| |||||    
T  9008003 cgatgtgggacttttttgaaatagcttgcttggtaaactct 9007963  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 9020216 - 9020153
Alignment:
Q  249 tggataatttatactagttcttctaagcataaat-aagaaacatacggaatgaaataaacaataata 314  Q
    |||||| ||||||||||||||   |||||||||| |||||||||| ||||||||| |||||| ||||    
T  9020216 tggatagtttatactagttct---aagcataaattaagaaacataaggaatgaaagaaacaacaata 9020153  T

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Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 33987918 - 33987813
Alignment:
Q  140 attatcatcaatcagagtaactagacacacataggccatcatgatgacttgccaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatct 239  Q
    |||||||||||||||||||  || | |||||||| |||||||||||| |||||||||| ||||||| |||||||||||||| ||| |||||||| |||||    
T  33987918 attatcatcaatcagagtagatacatacacatagtccatcatgatgaattgccaaaaa-ttaaattaatattcttgtcttacagcaaaatatcatgatct 33987820  T
Q  240 gattctt 246  Q
    |||||||    
T  33987819 gattctt 33987813  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 33988072 - 33987943
Alignment:
Q  12 tgagatgaaagatgaacttgtttatgcttttatatatcacatcccttcacttgcattcttgaacagtcgatgtgggactttcttgaaaca-gcttgcttg 110  Q
    |||| ||||||||| |||   ||||||||||||||||||| ||||||||||||| ||||||||||  |||||||||||||| |||||||| | |||| ||    
T  33988072 tgagttgaaagatggactcacttatgcttttatatatcacctcccttcacttgctttcttgaacaaccgatgtgggacttttttgaaacagggttgcatg 33987973  T
Q  111 gtaga--ctcttcctaacactttcttcctc 138  Q
     || |  |||||||||||||||||||||||    
T  33987972 ttaaactctcttcctaacactttcttcctc 33987943  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 44882936 - 44882987
Alignment:
Q  333 tgcatttgcatgctgttgttgtgtatagtatacttgttcttgcttagctcca 384  Q
    |||||||||  |||| |||||||| |||||||||||||||||| ||||||||    
T  44882936 tgcatttgcgggctgctgttgtgtgtagtatacttgttcttgcgtagctcca 44882987  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 1246171 - 1246220
Alignment:
Q  366 ttgttcttgcttagctccatcatattcataat-ataaccataaataggct 414  Q
    |||||||||| ||||| || |||||||||||| |||||||||||||||||    
T  1246171 ttgttcttgcgtagcttcagcatattcataatcataaccataaataggct 1246220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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