View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7729_high_3 (Length: 488)
Name: NF7729_high_3
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7729_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 216 - 473
Target Start/End: Original strand, 17999961 - 18000218
Alignment:
| Q |
216 |
aaccaaattactaagaaaatattgattttgtgacaggagtacaacctgatggaaattcctacagcttgagcaacatcaaaggagctatacaaaatgcagt |
315 |
Q |
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| T |
17999961 |
aaccaaattactaagaaaagattgattttgtgacaggagtacaacctgatggaaattcgtacagcttgagcagcatcaaaggagctatacaaaatgcagt |
18000060 |
T |
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| Q |
316 |
tggattttctccattcattgaatgtaatgtggactcatctggcaacagtcaactatatcaagtttatttgtgtgtggacacttctggatcaaacttcatt |
415 |
Q |
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| T |
18000061 |
tgggtttgctccattcattgaatgtaatgtggactcatctggcaacagtcaactatatcaagtttatttgtgtgtggacacttctggatcaaacttcatt |
18000160 |
T |
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| Q |
416 |
gactgtcctgtgttcccccatggcaaatgtggatctgagattgagttcccaacttttt |
473 |
Q |
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| T |
18000161 |
gactgtcctgtgttcccccatggcaaatgtggatctgagattgagttcccaacttttt |
18000218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 17999653 - 17999803
Alignment:
| Q |
11 |
aattctggacacatgaatgggagaaacatggtacttgctcagaatcagttcttaagcaacatgattattttgaaacaactctcaatttgagacaaaaagc |
110 |
Q |
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| T |
17999653 |
aattctggacacatgaatgggagaaacatggtacttgttcagaatcagttcttaagcaacatgattattttgaaacaactctcaacttgagacaaaaagc |
17999752 |
T |
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| Q |
111 |
caacctccttcaagctcttacaagtgcaggtaaatatctaagatccatacat |
162 |
Q |
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| T |
17999753 |
aaacctccttcaagctcttacaagtgcaggt-aatatctaagatccatacat |
17999803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 18006786 - 18006921
Alignment:
| Q |
16 |
tggacacatgaatgggagaaacatggtacttgctcagaatcagttcttaagcaacatgattattttgaaacaactctcaatttgagacaaaaagccaacc |
115 |
Q |
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| T |
18006786 |
tggacccatgaatgggagaaacatggtacttgctctgaatcagtgctaagtcaacatgactattttgaaacaactctcaatttgagacaaaaagccaacc |
18006885 |
T |
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| Q |
116 |
tccttcaagctcttacaagtgcaggtaaatatctaa |
151 |
Q |
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| T |
18006886 |
tcctccaagctcttacaagtgcaggtaaatatctaa |
18006921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 243 - 473
Target Start/End: Original strand, 18007016 - 18007249
Alignment:
| Q |
243 |
ttgtgacaggagtacaacctgatggaaattcctacagcttgagcaacatcaaaggagctatacaaaatgcagttggattttctccattcattgaatgtaa |
342 |
Q |
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| T |
18007016 |
ttgtgtcaggaatacaacctgatggaggatcctacactttgagcagcatcaaaggagctatacaaaatgcaattgggtatactccatacattgaatgcaa |
18007115 |
T |
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| Q |
343 |
tgtggactcatctggcaacagtcaactatatcaagtttatttgtgtgtggacacttctggatcaaacttcattgactgtcctgtgttcccccatggcaa- |
441 |
Q |
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| T |
18007116 |
tgttgattcatccaaaaacagccaactttatcaagtttacttgtgtgtggacacttctggatcagacttcattgactgccctgtgttcccaaaaggcaaa |
18007215 |
T |
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| Q |
442 |
--atgtggatctgagattgagttcccaacttttt |
473 |
Q |
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| T |
18007216 |
gcatgtggatctaagattgagttcccatcttttt |
18007249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 18029704 - 18029769
Alignment:
| Q |
359 |
aacagtcaactatatcaagtttatttgtgtgtggacacttctggatcaaacttcattgactgtcct |
424 |
Q |
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| T |
18029704 |
aacagccaactttatcaagtttacatgtgtgtggacacttctgggtcaaatttcattgagtgtcct |
18029769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 18029115 - 18029189
Alignment:
| Q |
12 |
attctggacacatgaatgggagaaacatggtacttgctcagaatcagttcttaagcaacatgattattttgaaac |
86 |
Q |
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| T |
18029115 |
attctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaac |
18029189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 17999836 - 17999864
Alignment:
| Q |
159 |
acattaaagtgacgcgctggtccatccgc |
187 |
Q |
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| T |
17999836 |
acattaaagtgacgcgctggtccatccgc |
17999864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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