View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7729_high_6 (Length: 351)
Name: NF7729_high_6
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7729_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 28775319 - 28774990
Alignment:
| Q |
4 |
atagcacatttaaatccacgaagaaccactcccaattttacgagaatcgctgagtcattgggacaggactatgaaccaaatttgtaattttatttattga |
103 |
Q |
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| T |
28775319 |
atagcacatttaaactcatgaagaaccactctcaatcttacgaagatcactgagtcattgggacaggactatgaaccaaaattgtaattttatttattga |
28775220 |
T |
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| Q |
104 |
ttttaacactcatgtgcataacaactttgtgacctttaatcaatgatcaataaatcatattttacctttcaagacacaaacttggtagttgttatgccac |
203 |
Q |
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| T |
28775219 |
ttttaacactcatgtgcacaacaactttgtgacctttaatcaatgatcaacaaatcatattttacctttcaagacacaaacttggtagttgttatgccac |
28775120 |
T |
|
| Q |
204 |
cacgtgtagttatacaaaaaagtaagtcaacataacacaatactcatgcaaacaccaaattcttagcataaacccaaaatatgcaatgctgcattgaaga |
303 |
Q |
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| T |
28775119 |
catgtgtagttatacaaaaaagtaagtcaacataacacaatactcatgcaaacaccaaattcttaacataaacctaaaatatgcaacgctgcattgaaga |
28775020 |
T |
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| Q |
304 |
attagaaagtgagtatgtgcgagaaataat |
333 |
Q |
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| T |
28775019 |
attagaaagtgagtatgtgcgagaaataat |
28774990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 20681438 - 20681506
Alignment:
| Q |
80 |
caaatttgtaattttatttattgattttaacactcatgtgcataacaactttgtgacctttaatcaatg |
148 |
Q |
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| T |
20681438 |
caaaattgtaatttcatttgttgattttaacatccatgtacacaacaactttgtgaacatgaatcaatg |
20681506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 30798868 - 30798941
Alignment:
| Q |
75 |
tgaaccaaatttgtaattttatttattgattttaacactcatgtgcataacaactttgtgacctttaatcaatg |
148 |
Q |
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| T |
30798868 |
tgaactaaaattgtaatttcatttgttgattttaacattcatgtgtacaacaactttatgaccataaatcaatg |
30798941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 19522104 - 19522025
Alignment:
| Q |
58 |
tcattgggacaggactatgaaccaaatttgtaattttatttattgattttaacactcatgtgcataacaactttgtgacc |
137 |
Q |
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| T |
19522104 |
tcattgggacaaaactttgaaccaaaggtgtaattctatttgttgattttaacacctttgtgcacaacgactttgtgacc |
19522025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 34580280 - 34580320
Alignment:
| Q |
80 |
caaatttgtaattttatttattgattttaacactcatgtgc |
120 |
Q |
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| T |
34580280 |
caaaattgtaattttatttgttgattttaacacccatgtgc |
34580320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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