View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7729_high_8 (Length: 288)
Name: NF7729_high_8
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7729_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 17401034 - 17400763
Alignment:
| Q |
17 |
cagcttttacttgtaaaatcagattaatttgagattcttgcctccttattaatttgagatcatcctaaacaataggtactataggta-----------ta |
105 |
Q |
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| T |
17401034 |
cagcttttacttgtaaaatcagattaatttgagattcttgcctccttattaatttgagatcatcctaaacaataggtactataggtacatactagctata |
17400935 |
T |
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| Q |
106 |
ggagttatgctacaacatgttatccctcataatattactaaaaacaccaacaaagaattcatctatcatcattcaagtacacccacctaatcaacacaaa |
205 |
Q |
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| T |
17400934 |
ggagttgtgctacaacatgttatccctcataatattactaaaaacaccaacaaagaattcatctatcatcattcaagtacacccacctaatcaacacaaa |
17400835 |
T |
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| Q |
206 |
ctcaaataaaggagaaaaccaccaccatagatatagctaagaattttgacgggataagtatcatccattcat |
277 |
Q |
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| T |
17400834 |
ctcaaataaaggagaaaaccaccaccatagatatagctaagaattttgaagggataagtatcatccattcat |
17400763 |
T |
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