View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7729_low_14 (Length: 242)

Name: NF7729_low_14
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7729_low_14
NF7729_low_14
[»] chr2 (34 HSPs)
chr2 (8-224)||(9029713-9029930)
chr2 (38-224)||(13001756-13001943)
chr2 (38-222)||(1226025-1226211)
chr2 (40-224)||(17117405-17117590)
chr2 (46-224)||(41096305-41096481)
chr2 (41-219)||(36059666-36059846)
chr2 (101-224)||(31272990-31273111)
chr2 (125-224)||(7993753-7993848)
chr2 (125-224)||(36481514-36481611)
chr2 (52-189)||(38985480-38985620)
chr2 (38-202)||(39081536-39081701)
chr2 (105-219)||(1419032-1419145)
chr2 (127-224)||(12269544-12269639)
chr2 (38-219)||(13997436-13997619)
chr2 (38-219)||(29480394-29480578)
chr2 (101-222)||(18915877-18915996)
chr2 (101-224)||(18172766-18172885)
chr2 (125-173)||(26261443-26261491)
chr2 (125-224)||(45619096-45619192)
chr2 (150-224)||(27302409-27302481)
chr2 (46-224)||(4856113-4856291)
chr2 (40-222)||(21746991-21747173)
chr2 (125-222)||(42411406-42411500)
chr2 (29-224)||(15457620-15457817)
chr2 (125-224)||(18676158-18676254)
chr2 (125-224)||(26151595-26151691)
chr2 (151-217)||(38599526-38599592)
chr2 (125-217)||(6530786-6530875)
chr2 (125-224)||(2063925-2064022)
chr2 (125-193)||(4264723-4264790)
chr2 (125-224)||(42759604-42759700)
chr2 (46-79)||(45619241-45619274)
chr2 (46-82)||(6530924-6530960)
chr2 (46-82)||(19367190-19367226)
[»] chr8 (25 HSPs)
chr8 (38-224)||(42777864-42778052)
chr8 (29-222)||(30915035-30915231)
chr8 (122-221)||(32098021-32098120)
chr8 (101-219)||(42076232-42076349)
chr8 (46-222)||(3445657-3445831)
chr8 (40-224)||(12531678-12531865)
chr8 (40-224)||(34523714-34523896)
chr8 (121-224)||(39697781-39697883)
chr8 (129-219)||(3628598-3628688)
chr8 (122-192)||(33452909-33452979)
chr8 (122-219)||(36514999-36515096)
chr8 (125-224)||(18420456-18420553)
chr8 (145-221)||(29372478-29372554)
chr8 (101-217)||(35875024-35875139)
chr8 (122-173)||(12268768-12268819)
chr8 (125-220)||(3471724-3471815)
chr8 (124-224)||(43926170-43926267)
chr8 (30-78)||(3574845-3574893)
chr8 (125-224)||(13585419-13585515)
chr8 (125-224)||(43967918-43968014)
chr8 (125-217)||(1004184-1004272)
chr8 (167-224)||(18112237-18112292)
chr8 (146-224)||(23567143-23567219)
chr8 (46-79)||(13585571-13585604)
chr8 (47-79)||(7858350-7858382)
[»] chr1 (33 HSPs)
chr1 (53-224)||(1269669-1269842)
chr1 (122-224)||(15441408-15441508)
chr1 (103-224)||(50371253-50371372)
chr1 (46-222)||(9777534-9777710)
chr1 (41-218)||(37873517-37873697)
chr1 (38-219)||(44836484-44836666)
chr1 (46-224)||(127-308)
chr1 (105-221)||(27703362-27703472)
chr1 (38-219)||(17674112-17674295)
chr1 (122-219)||(13120710-13120807)
chr1 (125-224)||(30899778-30899876)
chr1 (125-224)||(50552615-50552711)
chr1 (38-219)||(26486133-26486314)
chr1 (46-224)||(28885436-28885615)
chr1 (119-224)||(12971525-12971629)
chr1 (125-224)||(14084547-14084644)
chr1 (125-224)||(52055671-52055768)
chr1 (46-224)||(48722131-48722314)
chr1 (125-224)||(18127785-18127881)
chr1 (125-224)||(25930723-25930819)
chr1 (142-224)||(6150842-6150921)
chr1 (101-219)||(22386660-22386777)
chr1 (122-201)||(5560625-5560703)
chr1 (125-224)||(10109840-10109940)
chr1 (128-224)||(30004758-30004852)
chr1 (154-221)||(6333396-6333460)
chr1 (125-224)||(52240384-52240480)
chr1 (142-224)||(20905150-20905230)
chr1 (126-173)||(39080469-39080516)
chr1 (46-79)||(17487044-17487077)
chr1 (46-78)||(20905051-20905083)
chr1 (187-219)||(24556929-24556961)
chr1 (125-224)||(51109949-51110045)
[»] chr5 (32 HSPs)
chr5 (38-224)||(33281793-33281979)
chr5 (40-224)||(43511737-43511925)
chr5 (101-224)||(8379267-8379388)
chr5 (40-224)||(29156309-29156493)
chr5 (41-219)||(17325968-17326148)
chr5 (47-204)||(17513703-17513862)
chr5 (101-221)||(10591097-10591215)
chr5 (101-224)||(27351468-27351589)
chr5 (40-224)||(3349489-3349674)
chr5 (101-224)||(23069343-23069464)
chr5 (106-172)||(4177370-4177435)
chr5 (101-219)||(10033669-10033791)
chr5 (46-224)||(20976104-20976280)
chr5 (101-204)||(42291703-42291807)
chr5 (125-224)||(26377622-26377717)
chr5 (101-201)||(138285-138384)
chr5 (105-217)||(7390229-7390340)
chr5 (125-224)||(13423984-13424081)
chr5 (125-224)||(26312108-26312204)
chr5 (150-224)||(40779309-40779382)
chr5 (125-224)||(12661429-12661524)
chr5 (144-197)||(931512-931567)
chr5 (125-224)||(4734428-4734527)
chr5 (125-224)||(19099162-19099258)
chr5 (104-219)||(18873583-18873697)
chr5 (53-196)||(16061042-16061189)
chr5 (46-224)||(13474750-13474929)
chr5 (125-224)||(37046901-37046997)
chr5 (181-224)||(40956432-40956475)
chr5 (119-224)||(5829502-5829604)
chr5 (122-172)||(13288613-13288663)
chr5 (46-79)||(26377541-26377574)
[»] chr7 (32 HSPs)
chr7 (56-224)||(42312127-42312299)
chr7 (126-223)||(3799611-3799706)
chr7 (38-224)||(40841002-40841190)
chr7 (38-222)||(29730847-29731026)
chr7 (38-222)||(29741921-29742100)
chr7 (101-224)||(773707-773828)
chr7 (101-219)||(26633486-26633603)
chr7 (101-224)||(30739242-30739365)
chr7 (40-224)||(25610185-25610368)
chr7 (46-219)||(36438118-36438292)
chr7 (40-224)||(28589907-28590089)
chr7 (38-224)||(41852060-41852245)
chr7 (101-217)||(1366135-1366249)
chr7 (38-224)||(32956894-32957074)
chr7 (101-224)||(33418938-33419061)
chr7 (125-224)||(12251135-12251232)
chr7 (101-224)||(40001535-40001656)
chr7 (142-224)||(44876021-44876103)
chr7 (46-224)||(33910184-33910363)
chr7 (125-224)||(18015428-18015524)
chr7 (105-217)||(40737829-40737939)
chr7 (125-224)||(42160970-42161066)
chr7 (142-224)||(21145475-21145554)
chr7 (125-220)||(41908300-41908394)
chr7 (122-173)||(44002777-44002828)
chr7 (46-224)||(6379850-6380028)
chr7 (177-219)||(7366810-7366852)
chr7 (125-224)||(36796219-36796315)
chr7 (142-224)||(11672706-11672785)
chr7 (40-78)||(44875919-44875957)
chr7 (125-224)||(7636171-7636269)
chr7 (125-224)||(44893877-44893973)
[»] chr3 (33 HSPs)
chr3 (38-220)||(40151890-40152071)
chr3 (38-219)||(46904865-46905048)
chr3 (101-217)||(27303310-27303425)
chr3 (40-224)||(43905613-43905798)
chr3 (38-219)||(7767189-7767372)
chr3 (125-202)||(19965725-19965801)
chr3 (40-224)||(48626789-48626975)
chr3 (46-224)||(52654888-52655067)
chr3 (142-224)||(18408311-18408390)
chr3 (53-224)||(51939327-51939499)
chr3 (142-224)||(46791562-46791641)
chr3 (142-211)||(15998415-15998482)
chr3 (101-219)||(51147060-51147177)
chr3 (38-224)||(25598840-25599031)
chr3 (125-224)||(8364293-8364389)
chr3 (125-224)||(23164420-23164516)
chr3 (125-224)||(24252740-24252837)
chr3 (125-224)||(27729617-27729713)
chr3 (122-171)||(21596505-21596554)
chr3 (128-224)||(27110723-27110816)
chr3 (125-224)||(29387601-29387698)
chr3 (147-211)||(1254924-1254988)
chr3 (46-224)||(21784546-21784727)
chr3 (46-77)||(29387514-29387545)
chr3 (142-224)||(41706917-41706996)
chr3 (44-78)||(13401724-13401758)
chr3 (125-222)||(23067573-23067666)
chr3 (128-217)||(28132587-28132673)
chr3 (133-224)||(54430672-54430762)
chr3 (142-185)||(1649705-1649749)
chr3 (47-79)||(8364438-8364470)
chr3 (125-224)||(20762169-20762266)
chr3 (45-77)||(27110635-27110667)
[»] chr6 (15 HSPs)
chr6 (41-218)||(11088694-11088872)
chr6 (46-222)||(29308233-29308410)
chr6 (125-219)||(6294377-6294471)
chr6 (38-217)||(30915120-30915300)
chr6 (41-222)||(350535-350719)
chr6 (40-224)||(1092801-1092986)
chr6 (125-224)||(6360879-6360975)
chr6 (136-224)||(57808-57892)
chr6 (46-224)||(2618475-2618651)
chr6 (41-185)||(1690478-1690624)
chr6 (125-222)||(3514698-3514792)
chr6 (105-219)||(3748396-3748509)
chr6 (177-217)||(21946230-21946270)
chr6 (46-79)||(29401404-29401437)
chr6 (44-80)||(12614479-12614515)
[»] chr4 (22 HSPs)
chr4 (46-224)||(5545448-5545625)
chr4 (38-221)||(21791308-21791491)
chr4 (38-222)||(26328790-26328975)
chr4 (30-222)||(55134330-55134523)
chr4 (46-224)||(27632518-27632697)
chr4 (125-224)||(41038370-41038465)
chr4 (46-224)||(53011832-53012013)
chr4 (125-224)||(16887831-16887927)
chr4 (125-224)||(19661499-19661595)
chr4 (105-217)||(35653808-35653919)
chr4 (46-224)||(11681507-11681686)
chr4 (46-224)||(11689786-11689965)
chr4 (146-224)||(45172514-45172590)
chr4 (142-219)||(22423809-22423886)
chr4 (101-217)||(24449224-24449339)
chr4 (101-201)||(34982366-34982464)
chr4 (142-221)||(10575387-10575466)
chr4 (125-224)||(23426014-23426110)
chr4 (125-224)||(28463436-28463532)
chr4 (125-224)||(32130638-32130734)
chr4 (125-216)||(29221469-29221557)
chr4 (125-224)||(29580000-29580095)
[»] scaffold0126 (1 HSPs)
scaffold0126 (46-225)||(16829-17009)
[»] scaffold0564 (1 HSPs)
scaffold0564 (125-224)||(1181-1278)
[»] scaffold0035 (1 HSPs)
scaffold0035 (125-224)||(22653-22749)
[»] scaffold0034 (1 HSPs)
scaffold0034 (122-172)||(99086-99136)
[»] scaffold0181 (1 HSPs)
scaffold0181 (142-224)||(16998-17076)
[»] scaffold0100 (1 HSPs)
scaffold0100 (148-224)||(46045-46119)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 9029930 - 9029713
Alignment:
Q  8 tttggtgttgttagggtgaggtcagagccattcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttttgt 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9029930 tttggtgttgttagggtgaggtcggagccattcctataaaatatgagactcgactctctttttaaaataggctcccgaaaaataataacggaatttttgt 9029831  T
Q  108 gtagttaagcttttattaa-aaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaac 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9029830 gtagttaagcttttattaaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaac 9029731  T
Q  207 ggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||    
T  9029730 ggtgtcgtttggatttgt 9029713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 13001943 - 13001756
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaatttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||| ||||||||| ||    
T  13001943 ttcctataaaatatgaggatcgactctctttttaaaataggcccccggtaaaataatagcggaatttttatgtagttaaggttttataaaaaaatcagaa 13001844  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||    
T  13001843 tcaatagaatttctaaacacgaaacgaaataaaaaattaataagtgaaagagaagtgcaatttaccgaacagtgtcgtttggatttgt 13001756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 1226025 - 1226211
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttt---tgtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||  ||||||| |||  ||||||   ||||||| ||| |||   | |||||||||     
T  1226025 ttcctatgaaataggaggctcgactctctttttaaaataggc-cccttaaaataaaaacataattttttttgtgtagctaaacttcattaaaaaaatcag 1226123  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    ||| |  |||||||||||||||||||||||||||||||  | |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  1226124 aattagaagaacttctaaacatgaaacgaaataaaaaaaaattaagtgaaagagagatgaaatttacctaacgatgtcgtttggattt 1226211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 17117405 - 17117590
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctccc-ggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| |||||||| |||||| |||||||||||| |||   ||||||| || | ||  ||||||||||| ||||| ||||||||||||||| ||    
T  17117405 cctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaatgcaatttttttgtgtagctaagc-tttattaaaaaatcagaa 17117503  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||  ||| |||||||||||||||||||||| ||||  | ||||||||||||||||  |||||| | |||||||||||||||||||||    
T  17117504 tcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta-ctaacggtgtcgtttggatttgt 17117590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 41096305 - 41096481
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaatttttgtgtagttaagcttttattaaaaaat-cataatcaatag 143  Q
    ||||| |||||||| ||||||||||||||||| | ||  | ||||||| |||| |||||||||||||||||  ||| |||||||||  |||||| |  ||    
T  41096305 aaataggaggctcggctctctttttaaaatagacccctagtaaaataa-aacgtaatttttgtgtagttaaa-tttcattaaaaaaaacataataagaag 41096402  T
Q  144 aacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||| ||| |||||||  ||||||||||  |||||||||||||| | |||||||||||||||||||||    
T  41096403 aacttctaaacatgaaaggaattaaaaaaaaaataagtgaa--agaggtgaaatttatctaacggtgtcgtttggatttgt 41096481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 36059666 - 36059846
Alignment:
Q  41 ctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttttgt---gtagttaagcttttattaaaaaatcataat 137  Q
    |||| ||||| ||||||||||||| |||||||||||||  || | ||||||| |||| ||||||| |   |||| ||| |||  |||||||||||| | |    
T  36059666 ctatgaaataggaggctcgactctttttttaaaataggtaccagtaaaataaaaacgcaattttttttttgtagctaaacttc-attaaaaaatcagatt 36059764  T
Q  138 caatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||  |||||||||||||||||||| |||||||| |  | |||||||||||||||| ||||||||  ||||| ||||||||||    
T  36059765 cacaagaacttctaaacatgaaacaaaataaaataaaattaagtgaaagagaggtaaaatttacgtaacggcgtcgtttgga 36059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 31272990 - 31273111
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||||| ||||||||||  |||||||||||| |||||  |||||||||||| || ||||||| ||| |||  | |||| |||||||| ||||||||||    
T  31272990 tttttgtggagttaagcttc-attaaaaaatcaaaatcagaagaacttctaaaaattaaacgaattaagaaaa-attaagcgaaagagaagtgaaattta 31273087  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
    || ||| |||||||||||||||||    
T  31273088 cctaactgtgtcgtttggatttgt 31273111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 7993848 - 7993753
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  ||||||||||  ||| |||||||||| | |||||||||||||||||||||    
T  7993848 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaa--aataagtgaa--agatgtgaaatttatctaacggtgtcgtttggatttgt 7993753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 36481611 - 36481514
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | | |||||||||||||||||||    
T  36481611 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaatttatctaccggtgtcgtttggatttgt 36481514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 38985480 - 38985620
Alignment:
Q  52 gaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcataatcaatagaact 147  Q
    |||||||| |||||| |||||||||||| |||   ||||||| |||| |||||||   ||||||||||||||| |||||||||||| |||||  |||  |    
T  38985480 gaggctcggctctctatttaaaataggcccccaataaaataaaaacgtaattttttgtgtgtagttaagcttt-attaaaaaatcagaatcagaagagtt 38985578  T
Q  148 tctaaacatgaaacgaaataaaaaattaataagtgaaagaga 189  Q
    |||||| ||||||||||||| ||||  | |||||||||||||    
T  38985579 tctaaaaatgaaacgaaatacaaaaaaattaagtgaaagaga 38985620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 39081701 - 39081536
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt--gtgtagttaagcttttattaaaaaatcata 135  Q
    ||||||| ||||| |||| |||  ||| |||||||||||||  || | ||||||| |||  |||||||  ||||||||||||||  |||| ||||||| |    
T  39081701 ttcctatgaaataggaggttcggttctatttttaaaataggtcccagtaaaataaaaacataatttttttgtgtagttaagcttc-attataaaatcaga 39081603  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttacc 202  Q
    ||||  ||||||| |||| ||||||| ||| |||| |  | ||||||||||||||||||||||||||    
T  39081602 atcataagaacttttaaatatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttacc 39081536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 1419145 - 1419032
Alignment:
Q  105 tgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    |||||||||||  ||| |||||||| ||| |||||  ||||||| |||||||||||| ||| |||| |  | ||||||||||||| |||||||||||| |    
T  1419145 tgtgtagttaaa-tttcattaaaaagtcaaaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaagtgaaatttaccta 1419047  T
Q  205 acggtgtcgtttgga 219  Q
    |||||||| ||||||    
T  1419046 acggtgtcatttgga 1419032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 12269639 - 12269544
Alignment:
Q  127 aaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | |||||||||||||| ||||||    
T  12269639 aaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaatttatctaacggtgtcgtttgaatttgt 12269544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 13997619 - 13997436
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatt---tttgtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||| ||||| ||||||||  ||| ||||||||||||||  | | ||||| | |||| ||||   ||||||||| |||||||  ||||||||||||     
T  13997619 ttcctatgaaataggaggctcggttctatttttaaaataggccacagtaaaatcaaaacgcaattctttttgtgtagctaagcttc-attaaaaaatcag 13997521  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||  ||||||| ||||||  |||| |||||||| |  | ||||||||||||| |||||||||||| ||  |||| |||||||    
T  13997520 aatcagaagaacttttaaacacaaaacaaaataaaacaagattaagtgaaagagatgtgaaatttacctaaatgtgttgtttgga 13997436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 29480394 - 29480578
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatt---tttgtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||| |||||||||||| |  ||| |||||||||||||| |||| ||||| | || | ||||   ||||||||  ||| |||   | |||||||||     
T  29480394 ttcctatgaaatatgaggcttggttctatttttaaaataggcccccgtaaaatcaaaatgcaattctttttgtgtacctaatcttcattaaaaaaatcag 29480493  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||  ||||||| |||| | ||||| ||| |||| |  | ||||||||||||||||||| |||||| ||||||||||||||||    
T  29480494 aatcagaagaacttttaaatacgaaacaaaacaaaataaaattaagtgaaagagaggtgaactttacctaacggtgtcgtttgga 29480578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 18915877 - 18915996
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||||| ||||||||||| |||||||||  | |||||  ||| |||||||||||||||||||||| ||||  | ||||||||||||||||  ||||||    
T  18915877 tttttgtgcagttaagcttt-attaaaaaaatagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta 18915975  T
Q  201 ccaaacggtgtcgtttggattt 222  Q
     | ||||| ||||||| |||||    
T  18915976 -ctaacggcgtcgtttcgattt 18915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 18172766 - 18172885
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||||||||  ||||||| |||||||||||| |||||  |||  ||||||||||||||||||||| ||||  ||   |||||||||||||  ||||||    
T  18172766 tttttgtgtagccaagcttt-attaaaaaatcagaatcagaagagtttctaaacatgaaacgaaatacaaaa--aaattgtgaaagagaggtagaattta 18172862  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
    || ||||| |||||||||||||||    
T  18172863 cc-aacggcgtcgtttggatttgt 18172885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 26261491 - 26261443
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaat 173  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26261491 aaaaaatcataatcataagaacttctaaacatgaaacgaaataaaaaat 26261443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 45619192 - 45619096
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  45619192 aaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 45619096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 27302409 - 27302481
Alignment:
Q  150 taaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||| ||||| |  ||||||||| | |||||||||||||| |||| ||||||||||||||||    
T  27302409 taaacatgaaacgaaattaaaaaat--taagtgaaataaaggtgaaatttacctaacgttgtcgtttggatttgt 27302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 4856291 - 4856113
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaaaaaa--tcataatcaa 140  Q
    ||||| |||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||  |||||| |||  ||| |||||||||  ||| |||||     
T  4856291 aaataggaggctcgactctctttttaaaataggcccctagtaaaataa-aacgtaatttttttgtgtagctaaa-tttcattaaaaaaaatcagaatcag 4856194  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     |||| |||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | |||  ||||||||||||||||    
T  4856193 aagaagttctaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaacaatgtcgtttggatttgt 4856113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 21746991 - 21747173
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaatagg-ctcccggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| |||||||| |||||| ||||||||||| ||||   ||||||| |||  ||  |||||||||| |||||| ||||||||||||  | ||    
T  21746991 cctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacacaatttttttgtgtaattaagc-tttattaaaaaaatagaa 21747089  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    |||| ||| ||| |||||||||||||||||| ||||  | | ||||||||||||||  |||||| | ||||| |||||||| ||||    
T  21747090 tcaaaagagcttttaaacatgaaacgaaatacaaaa-aattcagtgaaagagaggtagaattta-ctaacggcgtcgtttgaattt 21747173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 42411406 - 42411500
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    ||||||||| |||||  ||||||| ||||||||||| ||||| |||||| | ||||||||||||  || ||||||| | |||||||||||||||||||    
T  42411406 aaaaaatcagaatcagaagaacttttaaacatgaaa-gaaattaaaaataattaagtgaaagag--gttaaatttatctaacggtgtcgtttggattt 42411500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 15457817 - 15457620
Alignment:
Q  29 tcagagccattcctataaaatatgaggctcgactctctttttaaaatagg-ctcccggaaaataataacggaatt---tttgtgtagttaagcttttatt 124  Q
    |||||||| | ||||| ||||| |||||||| |||||| ||||||||||| || |   ||||||| |||  ||||   ||||||||| |||||||| |||    
T  15457817 tcagagccgtccctatgaaataggaggctcggctctctatttaaaataggtcttcaataaaataaaaacacaattctttttgtgtagctaagcttt-att 15457719  T
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| ||| |  ||| ||||| |||||||||||||| | ||||  | |||||||||||||| |  |||||| | ||| | |||||||||||||||    
T  15457718 aaaaaatcaaaataagaagagcttctgaacatgaaacgaaaaacaaaaaaattaagtgaaagagagatagaattta-ctaacagcgtcgtttggatttgt 15457620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 18676158 - 18676254
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  ||||||||| |||| | |||||||||||||| ||||||    
T  18676158 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaactttatctaacggtgtcgtttgaatttgt 18676254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 26151595 - 26151691
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| ||||||||||||||  || |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  26151595 aaaaaatcagaatcagaagaagttctaaacatgaaagtaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 26151691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 38599592 - 38599526
Alignment:
Q  151 aaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttg 217  Q
    ||||||||||  |||||||| |  | |||||||||||||| ||||||||||| ||||||||||||||    
T  38599592 aaacatgaaataaaataaaataaaattaagtgaaagagagatgaaatttacctaacggtgtcgtttg 38599526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 6530875 - 6530786
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttg 217  Q
    ||||||||| |||||| ||||||||||||||||||| ||| |||||||  | |||||||||||||  ||||||||| | ||| ||| ||||||    
T  6530875 aaaaaatcagaatcaaaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaaagaga--tgaaatttatctaacagtgacgtttg 6530786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 2064022 - 2063925
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||| |||||||| ||| || ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||| ||||||    
T  2064022 aaaaaatcagaatcagaagaccttctaaatatggaaggaattaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgtcgtttgaatttgt 2063925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 4264723 - 4264790
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtg 193  Q
    ||||||| | |||||| |||||||||||| |||||| ||||||||||| || |||| ||||||||||||    
T  4264723 aaaaaattagaatcaaaagaacttctaaagatgaaatgaaataaaaaa-tattaagcgaaagagaggtg 4264790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 42759604 - 42759700
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| |||||||||||||| ||| |||||||  | |||||||||||||  || |||||| | |||||||||||||| ||||||    
T  42759604 aaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaaaa-aattaagtgaaagaga--tggaatttatctaacggtgtcgtttgaatttgt 42759700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 45619274 - 45619241
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggc 79  Q
    ||||| ||||||||||||||||||||||||||||    
T  45619274 aaatacgaggctcgactctctttttaaaataggc 45619241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 6530960 - 6530924
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcc 82  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  6530960 aaataggaggctcggctctctttttaaaataggctcc 6530924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 19367190 - 19367226
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcc 82  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  19367190 aaataggaggcttgactctctttttaaaataggctcc 19367226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 42778052 - 42777864
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaatttttgtgtagttaagctttt-attaaaaaatcata 135  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||||||||||| |||||||||| | |    
T  42778052 ttcctataaaatatgaggctcgactctctttttaaaataggcctccggtaaaataataacggaatttttgtatagttaagctttttattaaaaaattaga 42777953  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| |||||    
T  42777952 atcaatagaacttctattcatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttactgaacggtgtggtttggttttgt 42777864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 30915035 - 30915231
Alignment:
Q  29 tcagagccattcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatt--tttgtgtagttaagcttttattaa 126  Q
    |||| ||| ||| ||||||||| |||| ||| ||||||||||||||||| ||||   ||||||| |||  ||||  ||| |||||||||| ||| |||||    
T  30915035 tcagggccgttcttataaaataggaggttcggctctctttttaaaatagactccat-aaaataaaaacataattgttttatgtagttaag-tttcattaa 30915132  T
Q  127 aaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaat--taa-taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    |||||||||||||  ||||| |||||| |||||||||||||||||||  ||| |||||||||||||| |||||||| ||  |||||||  |||||||||    
T  30915133 aaaatcataatcagaagaacgtctaaaaatgaaacgaaataaaaaataataattaagtgaaagagagttgaaattttcctgacggtgttatttggattt 30915231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 32098021 - 32098120
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    |||||||||||  |||||   ||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||  ||||||||||||||||||    
T  32098021 attaaaaaatcgaaatcagatgaacttctaaacatgaaacgaaataaaaaaaaattaagtgaaagagaagtgaaatttacgtaacggtgtcgtttggatt 32098120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 42076349 - 42076232
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||| |||||||  |||||||||||| |||||| ||||||| |||||||||||| ||| |||| |  | ||||||||||| ||||||||||||    
T  42076349 tttttgtgtagataagcttc-attaaaaaatcagaatcaaaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagataggtgaaattta 42076251  T
Q  201 ccaaacggtgtcgtttgga 219  Q
    || ||||||||| ||||||    
T  42076250 cctaacggtgtcatttgga 42076232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 3445831 - 3445657
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcc-cggaaaataataacggaatttttgtgtagttaagcttttatt--aaaaaatcataatcaata 142  Q
    ||||| |||||||||||||||||||||||||||| ||  | ||||||| |||| |||||||||||||||||  ||| |||  ||||||||| |||||  |    
T  3445831 aaataggaggctcgactctctttttaaaataggcccctagtaaaataa-aacgtaatttttgtgtagttaa-atttcattaaaaaaaatcagaatcagaa 3445734  T
Q  143 gaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    |||||||||||||||||| ||| |||||||  | |||||| |  ||||| |||||||| | |||||||||||||||||||    
T  3445733 gaacttctaaacatgaaaagaattaaaaaa-aattaagtgga--agaggcgaaatttatctaacggtgtcgtttggattt 3445657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 12531865 - 12531678
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt----gtgtagttaagcttttattaaaaaatcat 134  Q
    ||||| ||||| |||||| | |||||| ||||||||||||||||   ||||||| |||  |||||||    |||||| |||||||| ||||||||||||     
T  12531865 cctatgaaataggaggcttggctctctatttaaaataggctcccaataaaataaaaacacaatttttttgtgtgtagctaagcttt-attaaaaaatcag 12531767  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||| |  ||| |||||||||||||||||||||| ||||  | ||||||||||||||||  |||||| | ||||| |||||||| ||||||    
T  12531766 aataagaagagcttctaaacatgaaacgaaatataaaaaaattaagtgaaagagaggtataattta-ctaacggcgtcgtttgaatttgt 12531678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 34523714 - 34523896
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| |||||||| |||||| |||||||||||| |||   ||||||| |||| |||||||  |||||| |||||||| |||||||| ||| ||    
T  34523714 cctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaatttttttgtgtagctaagcttt-attaaaaa-tcagaa 34523811  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||  ||| |||||||||||||||||||||| ||||  | ||||||||  ||||||  ||||||   |||||||||||||||||||||    
T  34523812 tcagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaa--agaggtagaattta-ataacggtgtcgtttggatttgt 34523896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 39697781 - 39697883
Alignment:
Q  121 tattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggat 220  Q
    ||||||||||||| |||||  |||  ||||||||||||||||||||| ||||  ||||||||||||||||||  |||||| | ||| ||||| |||||||    
T  39697781 tattaaaaaatcagaatcagaagagtttctaaacatgaaacgaaatacaaaaaaaataagtgaaagagaggtagaattta-ctaacagtgtcatttggat 39697879  T
Q  221 ttgt 224  Q
    ||||    
T  39697880 ttgt 39697883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 3628598 - 3628688
Alignment:
Q  129 aatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||||| |||||| ||||||| |||||||||||  ||| |||| |  | |||||||||||||||||||||||||| ||| ||||||||||||    
T  3628598 aatcagaatcaaaagaacttttaaacatgaaagaaaacaaaataaaattaagtgaaagagaggtgaaatttacctaactgtgtcgtttgga 3628688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 33452979 - 33452909
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggt 192  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  33452979 attaaaaaatcataattagaagaacttctaaacatgaaacgaaataaaaaaaaattaagtgaaatagaggt 33452909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 36514999 - 36515096
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||||||||| |||||  ||||||| |||||| ||||| ||| |||| |  | |||||||||||||| ||||||||| | ||||||||||||||||    
T  36514999 attaaaaaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaattaagtgaaagagagctgaaatttatctaacggtgtcgtttgga 36515096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 18420456 - 18420553
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  | ||||||||||||||||| ||| |||||||  | ||||||||| ||  |||||||||| | |||||||||||||||||||||    
T  18420456 aaaaaatcagaatcagaataacttctaaacatgaaaggaattaaaaaaaaattaagtgaaaaag--gtgaaatttatctaacggtgtcgtttggatttgt 18420553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 29372554 - 29372478
Alignment:
Q  145 acttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    |||||||||||||||||||||||||| |  | ||||||||| | | |||||||||||| || |||||||||||||||    
T  29372554 acttctaaacatgaaacgaaataaaataaaattaagtgaaacaaatgtgaaatttacctaatggtgtcgtttggatt 29372478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 35875139 - 35875024
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||  |||||||  |||||||||||| |||||  ||||||| |||||||||||| |||||||| |  | |||||||| |||||||| | ||||    
T  35875139 tttttgtgtaactaagcttc-attaaaaaatcagaatcagaagaacttttaaacatgaaacaaaataaaataaaattaagtgaacgagaggtggagttta 35875041  T
Q  201 ccaaacggtgtcgtttg 217  Q
    || |||| |||| ||||    
T  35875040 cctaacgatgtcatttg 35875024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 12268768 - 12268819
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaat 173  Q
    ||||||||||||||||||  | |||| |||||||||||||||||||||||||    
T  12268768 attaaaaaatcataatcagaataactactaaacatgaaacgaaataaaaaat 12268819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 3471815 - 3471724
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggat 220  Q
    ||||||||| |||||  ||||||||||||||| ||| ||| ||||||| |  ||||||||| ||  |||||||||| | |||||||||||||||||    
T  3471815 aaaaaatcagaatcataagaacttctaaacattaaaggaattaaaaaaat--taagtgaaatag--gtgaaatttatctaacggtgtcgtttggat 3471724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 43926170 - 43926267
Alignment:
Q  124 taaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttg 223  Q
    |||||||||| |||||  |||| |||||||||||||| ||| |||||||  | |||| |||  ||||||||||||||   ||||||||||||||||||||    
T  43926170 taaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaaaa-aattaagagaa--agaggtgaaatttatgtaacggtgtcgtttggatttg 43926266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 3574845 - 3574893
Alignment:
Q  30 cagagccattcctataaaatatgaggctcgactctctttttaaaatagg 78  Q
    ||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  3574845 cagagccgttcctatgaaataggaggctcgactctctatttaaaatagg 3574893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 13585515 - 13585419
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  | |||||||||||| | ||||| |||||||||| ||||    
T  13585515 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaa--aaaggtgaaatttatctaacggcgtcgtttggacttgt 13585419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 43967918 - 43968014
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||||||||||| |||||| ||| |||||||  | ||||||||  |||||||||||||| | || | ||||||||||||||||    
T  43967918 aaaaaatcagaatcagaagaacttctaaatatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaaggatgtcgtttggatttgt 43968014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 1004272 - 1004184
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttg 217  Q
    ||||||||| |||||  |||| || ||||||||||| ||| ||||||| |  ||||||||||||  |||||||||| | ||||||||||||||    
T  1004272 aaaaaatcagaatcagaagaagttttaaacatgaaaggaattaaaaaaat--taagtgaaagag--gtgaaatttatctaacggtgtcgtttg 1004184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 18112292 - 18112237
Alignment:
Q  167 aaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||| |||||||||||||||  || ||||||| | |||||||||||||||||||||    
T  18112292 aaaaaaataataagtgaaagag--gttaaatttatctaacggtgtcgtttggatttgt 18112237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 23567143 - 23567219
Alignment:
Q  146 cttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||||||||||| ||||  | |||||||||||| |||  |||||| | ||||| |||||||||||||||    
T  23567143 cttctaaacatgaaacgaaatacaaaa-aattaagtgaaagagtggtagaattta-ctaacggcgtcgtttggatttgt 23567219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 13585604 - 13585571
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggc 79  Q
    ||||| ||||||||||||||||||||||||||||    
T  13585604 aaataggaggctcgactctctttttaaaataggc 13585571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 7858382 - 7858350
Alignment:
Q  47 aatatgaggctcgactctctttttaaaataggc 79  Q
    |||| ||||||||||||||||||||||||||||    
T  7858382 aataggaggctcgactctctttttaaaataggc 7858350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 1269842 - 1269669
Alignment:
Q  53 aggctcgactctctttttaaaataggctcccgg-aaaataataacggaatttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttcta 151  Q
    |||||| |||||| ||| |||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1269842 aggctcaactctcatttaaaaataggcctacggtaaaataataacggaatttttgtgtagttaagcttttattaaaaaatcagaatcaatagaacttcta 1269743  T
Q  152 aacatgaaacgaaataa-aaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  1269742 aacatgaaacgaaataaaaaaattaataagtgaaagaaaggtgaaatttacggaacggtgtcgtttggatttgt 1269669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 15441508 - 15441408
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    |||||||||||| |||||  ||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  15441508 attaaaaaatcaaaatcagaagaacttctaaacatgaaacggaataaaaaa--aataagtgaaagagaggtgaaatttacctaacggcgtcgtttggatt 15441411  T
Q  222 tgt 224  Q
    |||    
T  15441410 tgt 15441408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 50371372 - 50371253
Alignment:
Q  103 tttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttacc 202  Q
    ||||||||| |||||||  |||||||||||| |||||  |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  50371372 tttgtgtagctaagcttc-attaaaaaatcagaatcataagaacttctaaacatgaaacgaaataaaaaa-aattaagtgaaagagaggtgaaatttacc 50371275  T
Q  203 aaacggtgtcgtttggatttgt 224  Q
     |||| ||| ||||||||||||    
T  50371274 taacgatgttgtttggatttgt 50371253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 9777710 - 9777534
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttttgt-gtagttaagcttttattaaaaaatcataatcaataga 144  Q
    ||||| |||| |||||||||||||||||||||| |||   ||||||| |||  ||||||| | |||| ||| |||  |||||||||||| ||| |  | |    
T  9777710 aaataggaggttcgactctctttttaaaatagg-tcctctaaaataaaaacataattttttttgtagctaaacttc-attaaaaaatcagaattagaata 9777613  T
Q  145 acttctaaacatgaaacgaaataaaaaattaat-aagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    ||||||||||||||||| ||||||||||  ||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  9777612 acttctaaacatgaaactaaataaaaaaaaaattaagtgaaagagaagtgaaatttacctaacggtgtcgtttggattt 9777534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 37873517 - 37873697
Alignment:
Q  41 ctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcataat 137  Q
    |||| ||||| ||||||||| ||| |||||||||||||| || | ||||||| || | |||||||   ||||||||||||||  |||||||||| | |||    
T  37873517 ctatgaaataggaggctcgattctatttttaaaataggccccagtaaaataaaaatgtaattttttgtgtgtagttaagcttc-attaaaaaattagaat 37873615  T
Q  138 caatagaacttctaaacatgaaacgaaataaaaaattaat-aagtgaaagagaggtgaaatttaccaaacggtgtcgtttgg 218  Q
    ||  ||||||| |||||||||||| || ||||| |  ||| ||||||||||||||||||||||||  ||| |||||||||||    
T  37873616 cataagaacttttaaacatgaaacaaactaaaataaaaattaagtgaaagagaggtgaaatttacgtaacagtgtcgtttgg 37873697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 44836484 - 44836666
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||||||||| |||| ||||||||||||||||||||  |    | ||||||| |||| |||||||   |||||| ||||  ||||||||||||| |     
T  44836484 ttcctataaaataggaggttcgactctctttttaaaataaacctaagtaaaataaaaacgcaattttttctgtgtagctaag--tttattaaaaaattag 44836581  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||  ||||||| |||||||||||| |||||||| |  | ||||||||||||| |||||||||||| | ||||||| ||||||    
T  44836582 aatcataagaacttttaaacatgaaacaaaataaaataaaattaagtgaaagagatgtgaaatttacctagcggtgtcatttgga 44836666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 308 - 127
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagctt---ttattaaaaaatcataatca 139  Q
    ||||| ||||||||  |||||||||||||||||||||| | ||||||| |||| |||||||  |||||| ||| |||   | |  ||||||||| |||||    
T  308 aaataggaggctcggttctctttttaaaataggctcccagtaaaataa-aacgtaatttttttgtgtagctaaacttcattaaaaaaaaaatcaaaatca 210  T
Q  140 atagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    | |||||||| |||||||||| ||| |||||||  | ||||||||  |||||||||||||| | |||||||||||||||||||||    
T  209 aaagaacttccaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaatttatctaacggtgtcgtttggatttgt 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 27703362 - 27703472
Alignment:
Q  105 tgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    ||||||||||||||||  ||||||||||| |||||  | |||||||||||||||||||||||||||      |||||||| ||||||||||||||||| |    
T  27703362 tgtgtagttaagctttg-ttaaaaaatcagaatcataataacttctaaacatgaaacgaaataaaat-----taagtgaaggagaggtgaaatttaccta 27703455  T
Q  205 acggtgtcgtttggatt 221  Q
    || ||||||||||||||    
T  27703456 acagtgtcgtttggatt 27703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 17674112 - 17674295
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa---tttttgtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||| ||||| |||| |||||||| ||||||||||||||||| | ||||| | |||  ||   ||||||||||||||| | || |||||||| ||||    
T  17674112 ttcctatgaaataagaggttcgactctatttttaaaataggctccagtaaaatcaaaacacaattctttttgtgtagttaaac-ttcattaaaaagtcat 17674210  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    | |||  ||||||| |||||| ||||| ||| |||| |  | ||||||||| | |||||||||||||| ||||||||| ||||||    
T  17674211 attcagaagaacttttaaacacgaaacaaaacaaaataaaattaagtgaaaaataggtgaaatttacctaacggtgtcatttgga 17674295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 13120710 - 13120807
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||||||||| |||||  ||||||| |||||| ||||| ||| |||| |  | ||||||| |||||||||||||||||| ||||||||||||||||    
T  13120710 attaaaaaatcagaatcagaagaacttttaaacacgaaacaaaacaaaataaaattaagtgatagagaggtgaaatttacctaacggtgtcgtttgga 13120807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 30899876 - 30899778
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaat-aagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttg 223  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  ||| |||||||||||  |||||||||| | ||||||||||||||||||||    
T  30899876 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttg 30899779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 50552711 - 50552615
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||| ||||||||||||||||||| ||| |||||||  | |||||||||||||  ||||||||| | || ||||||||||||||||||    
T  50552711 aaaaaatcagaatcaaaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaaagaga--tgaaatttatctaatggtgtcgtttggatttgt 50552615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 26486133 - 26486314
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||||||||| ||||||||  ||| |||| ||||||||| |  | ||||||| || | | |||||   |||||| |||||||  ||| ||||||||     
T  26486133 ttcctataaaataggaggctcggttctattttcaaaataggcccgagtaaaataaaaatgcatttttttgtgtgtagctaagcttc-atttaaaaatcag 26486231  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||  ||||||| |||||||||||| |||||||| |  | ||| ||||||||  |||||||||||||||||||||| ||||||    
T  26486232 aatcagaagaacttttaaacatgaaacaaaataaaataaaattaattgaaagag--gtgaaatttaccaaacggtgtcatttgga 26486314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 28885436 - 28885615
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagctt--ttattaaaaaatcataatcaa 140  Q
    ||||| ||||||||||||||||||||||||||   ||  | ||||||| |||| |||||||  ||||||||||  ||  |||  ||||||||| ||| |     
T  28885436 aaataggaggctcgactctctttttaaaatagatacctagtaaaataa-aacgtaatttttttgtgtagttaaatttcattaaaaaaaaatcagaattag 28885534  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     ||||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  28885535 aagaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 28885615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 12971629 - 12971525
Alignment:
Q  119 tttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgg 218  Q
    ||||||||||||||| ||||| |  | ||||| |||||||||||||||| ||||  ||||||||||||| ||||  |||||| | ||||| |||||||||    
T  12971629 tttattaaaaaatcagaatcagtttagcttcttaacatgaaacgaaatacaaaaaaaataagtgaaagataggtagaattta-ctaacggagtcgtttgg 12971531  T
Q  219 atttgt 224  Q
    ||||||    
T  12971530 atttgt 12971525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 14084547 - 14084644
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||| ||||  |||||||||||||| | || ||||||||||||||||||    
T  14084547 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaaatgaa--agaggtgaaatttatctaatggtgtcgtttggatttgt 14084644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 52055768 - 52055671
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  | ||||||||| ||||||| ||| |||||||| ||||||||||  |||||| ||||||| | ||||||||||||| |||||||    
T  52055768 aaaaaatcagaatcagaaaaacttctaagcatgaaaggaattaaaaaataaataagtgaa--agaggtaaaatttatctaacggtgtcgtttagatttgt 52055671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 48722131 - 48722314
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctccc--ggaaaataataacggaatttt--tgtgtagttaagctt--ttattaaaaaatcataatca 139  Q
    ||||| ||||||||||||||||||||||||||| |||   | ||||||| |||| ||||||  |||||||||||  ||  |||  ||||||||| |||||    
T  48722131 aaataggaggctcgactctctttttaaaatagg-tccatagtaaaataa-aacgtaattttgttgtgtagttaaatttcattaaaaaaaaatcagaatca 48722228  T
Q  140 atagaacttctaaacatgaaacgaaat----aaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
      ||||||||||||||||||| |||||    |||||| || |||||  || |||||||||||||| | |||||||||||||||||||||    
T  48722229 gaagaacttctaaacatgaaa-gaaattaaaaaaaaaatattaagt--aaaagaggtgaaatttatctaacggtgtcgtttggatttgt 48722314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 18127785 - 18127881
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||| || |||||  ||||||||||||||| ||| ||||| |||||  | ||||||||||||  || ||||||||| |||||||||||||||||||||    
T  18127785 aaaaaaacagaatcataagaacttctaaacattaaa-gaaattaaaaaaaattaagtgaaagag--gtaaaatttacctaacggtgtcgtttggatttgt 18127881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 25930819 - 25930723
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||| |||||||| |||||| ||| |||||||  | |||||||||||||  ||||||||| | |||||||||||||||||||||    
T  25930819 aaaaaatcagaatcagaagagcttctaaatatgaaaagaattaaaaaaa-attaagtgaaagaga--tgaaatttatctaacggtgtcgtttggatttgt 25930723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 6150921 - 6150842
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||| ||| |||||||  | ||||||||| ||  |||||||||| | |||||||||||||||||||||    
T  6150921 agaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaatag--gtgaaatttatctaacggtgtcgtttggatttgt 6150842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 22386660 - 22386777
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||| |||||||||| ||| |||||||||||| |||||  |||  || |||||| ||||| |||||||| |  | ||||||||||||| ||||||||||    
T  22386660 tttttttgtagttaag-tttcattaaaaaatcagaatcataagattttttaaacacgaaacaaaataaaataaaattaagtgaaagagatgtgaaattta 22386758  T
Q  201 ccaaacggtgtcgtttgga 219  Q
       |||| |||||||||||    
T  22386759 tttaacgatgtcgtttgga 22386777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 5560703 - 5560625
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaa-aaattaataagtgaaagagaggtgaaatttac 201  Q
    ||||||| |||  |||||| |||||||||||||||||||| ||||||| |||  |||||||||||||||  ||||||||||    
T  5560703 attaaaagatctgaatcaaaagaacttctaaacatgaaacaaaataaataaaaaaataagtgaaagaga--tgaaatttac 5560625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 10109940 - 10109840
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaa---taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    ||||| ||| |||||  ||||||||||||||||||| ||| |||||||  ||   ||||||||  |||||||||||||| | ||||| ||||||||||||    
T  10109940 aaaaactcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaaaaattaagtgaa--agaggtgaaatttatctaacggcgtcgtttggatt 10109843  T
Q  222 tgt 224  Q
    |||    
T  10109842 tgt 10109840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 30004758 - 30004852
Alignment:
Q  128 aaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  | |||||||||||| | |||||| ||||||| ||||||    
T  30004758 aaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--aaaggtgaaatttatctaacggtatcgtttgaatttgt 30004852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 6333396 - 6333460
Alignment:
Q  154 catgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    |||||||||||||||||||  | |||||||||||||  ||||||||||| ||| ||||||||||||||    
T  6333396 catgaaacgaaataaaaaaa-attaagtgaaagaga--tgaaatttacctaacagtgtcgtttggatt 6333460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 52240384 - 52240480
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||||||||||| |||||| ||| |||||||  | ||||||||  |||||||||||||| | ||| |||||||||| ||||||    
T  52240384 aaaaaatcagaatcagaagaacttctaaatatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaacagtgtcgtttgaatttgt 52240480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 20905150 - 20905230
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||| |||||| ||| |||||||    |||||||||| |  |||||||||| | |||||||||||||||||||||    
T  20905150 agaacttctaaatatgaaaggaattaaaaaaaacttaagtgaaagtg--gtgaaatttatccaacggtgtcgtttggatttgt 20905230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 39080469 - 39080516
Alignment:
Q  126 aaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaat 173  Q
    |||||||| |||||  ||||||||||||||||||| ||||||||||||    
T  39080469 aaaaatcagaatcataagaacttctaaacatgaaatgaaataaaaaat 39080516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 17487044 - 17487077
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggc 79  Q
    ||||| ||||||||||||||||||||||||||||    
T  17487044 aaataggaggctcgactctctttttaaaataggc 17487077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 20905051 - 20905083
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaatagg 78  Q
    ||||| |||||||||||||||||||||||||||    
T  20905051 aaataggaggctcgactctctttttaaaatagg 20905083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 24556961 - 24556929
Alignment:
Q  187 agaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||||||||||||| ||||||||||||||||    
T  24556961 agaggtgaaatttacctaacggtgtcgtttgga 24556929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 51109949 - 51110045
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| ||| |  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||||||||| |||| ||||||    
T  51109949 aaaaaatcagaattagaagaatttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcatttgaatttgt 51110045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 33281979 - 33281793
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaat--ttttgtgtagttaagcttttattaaaaaatcata 135  Q
    ||||||| |||||||||| | ||||||||||||||||||||   | | ||||||| |||| |||  |||||||||||||| |||  ||||||| ||||||    
T  33281979 ttcctatgaaatatgaggtttgactctctttttaaaataggtctcagtaaaataaaaacgcaatctttttgtgtagttaaacttc-attaaaagatcata 33281881  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||| |||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||  |||| ||||||||| ||||||    
T  33281880 atcaaaagaacttctaaacatgaaacaaaatataaaa-aaataagtgaaagagaggtgaaatttacttaacgatgtcgtttgaatttgt 33281793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 43511925 - 43511737
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt-----gtgtagttaagcttttattaaaaaatca 133  Q
    ||||| ||||| |||||||| |||||| |||||||||||| |||   ||||||| |||| |||||||     |||||| |||||||| ||||||||||||    
T  43511925 cctatgaaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaattttttttttgtgtagctaagcttt-attaaaaaatca 43511827  T
Q  134 taatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     |||||  ||| |||||||||||||||||||||| ||||  | ||||||||||||||||  |||||| | |||||||||||||||||||||    
T  43511826 gaatcagcagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta-ctaacggtgtcgtttggatttgt 43511737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 8379267 - 8379388
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||||||||||| ||||  |||||||||| |  ||||  ||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  8379267 tttttgtgtagttatgcttc-attaaaaaataagtatcagaagatcttctaaacatgaaacgaaaaaaaaaat-attaagtgaaagagaggtgaaattta 8379364  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
    |  |||||||||||||||||||||    
T  8379365 cgcaacggtgtcgtttggatttgt 8379388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 29156493 - 29156309
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataat 137  Q
    ||||||||||| || ||||| |||||| ||||||||||||||||  ||||||| ||   ||  ||||||||||| ||| | ||||||||||||||| |||    
T  29156493 cctataaaataggaagctcggctctctatttaaaataggctcccacaaaataaaaatacaatttttttgtgtagctaaac-tttattaaaaaatcaaaat 29156395  T
Q  138 caatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    || |||| |||||||||||||||| ||||| ||||  | ||| ||||||||||||  |||||| | |||||| ||||||| ||||||    
T  29156394 cagtagagcttctaaacatgaaacaaaatacaaaaaaattaattgaaagagaggtagaattta-ctaacggtatcgtttgaatttgt 29156309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 219
Target Start/End: Complemental strand, 17326148 - 17325968
Alignment:
Q  41 ctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatt---tttgtgtagttaagcttttattaaaaaatcataat 137  Q
    |||| ||||||||||||||  ||| ||||||||||||||||| | ||||| | |||| ||||   ||||||||| |||  ||  |||||||||||| |||    
T  17326148 ctatgaaatatgaggctcggttctatttttaaaataggctccagtaaaatcaaaacgcaattctttttgtgtagctaaaattc-attaaaaaatcagaat 17326050  T
Q  138 caatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||  ||||||| |||||| ||||| ||| |||| |  |  |||||||||| |||||||||||||| ||||||||||||||||    
T  17326049 cagaagaacttttaaacacgaaacaaaacaaaataaaataaagtgaaagataggtgaaatttacctaacggtgtcgtttgga 17325968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 17513703 - 17513862
Alignment:
Q  47 aatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaatt--tttgtgtagttaagcttttattaaaaaatcataatcaatag 143  Q
    |||| ||||||||||||||| |||| ||||||| |||   ||||||| || | ||||  |||||||||||||||||| |||||||||  | |||||  ||    
T  17513703 aataggaggctcgactctctatttataataggcccccaataaaataaaaatgcaattattttgtgtagttaagcttt-attaaaaaaatagaatcagaag 17513801  T
Q  144 aacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    | |||||||||||||||||||||| ||||  | ||||||||||||||||  ||||||||||    
T  17513802 agcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaatttaccaa 17513862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 10591097 - 10591215
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||||||||||||||||| |||||||||||| |||||  | |  ||||||||||||||||||||| ||||  | ||||||||||||||||  ||||||    
T  10591097 tttttgtgtagttaagcttt-attaaaaaatcagaatcagaatagtttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta 10591195  T
Q  201 ccaaacggtgtcgtttggatt 221  Q
     | ||||||| ||||||||||    
T  10591196 -ctaacggtgccgtttggatt 10591215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 27351589 - 27351468
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||| ||| |||  ||||||||||   |||||  ||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||||    
T  27351589 tttttgtgtagctaaacttc-attaaaaaattcgaatcagaagaacttctaaacatgaaaggaaataaaaaaa-attaagtgaaagagaggtgaaattta 27351492  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
    || ||  ||||||||| |||||||    
T  27351491 cctaatagtgtcgtttagatttgt 27351468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 3349489 - 3349674
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaatagg-ctcccggaaaataataacggaattttt--gtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| |||||||| |||||| ||||||||||| ||||   ||||||| |||| |||||||  |||||| |||||||| |||||||||||| ||    
T  3349489 cctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacgcaatttttttgtgtagctaagcttt-attaaaaaatcagaa 3349587  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||  |||  ||||||||||||||| ||||| ||||    | ||||||||||||||  |||||| | ||||||||  |||||||||||    
T  3349588 tcagaagagtttctaaacatgaaactaaatacaaaaaacttgagtgaaagagaggtataattta-ctaacggtgtgatttggatttgt 3349674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 23069464 - 23069343
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||| ||||| |||||||  |||||||||||| ||| |  |||||||||||| |||||||| |||||||||  | ||| ||||||| | ||||||||||    
T  23069464 tttttttgtagctaagcttc-attaaaaaatcaaaattagaagaacttctaaatatgaaacgtaataaaaaaa-attaaatgaaagaaatgtgaaattta 23069367  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
    || |||||||||||||| ||||||    
T  23069366 cctaacggtgtcgtttgaatttgt 23069343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 4177435 - 4177370
Alignment:
Q  106 gtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaa 172  Q
    ||||||||||||||  ||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  4177435 gtgtagttaagcttc-attaaaaaatcataatcagaagaacttctaaacatgaaacaaaataaaaaa 4177370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 10033791 - 10033669
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaa---aattaa--taagtgaaagagaggtgaa 195  Q
    |||||||||||||||  |||  ||||||||||| |||||  ||||||| |||||||||||| ||| ||||   ||| ||  |||||||||||||||||||    
T  10033791 tttttgtgtagttaaa-tttcgttaaaaaatcagaatcagaagaacttttaaacatgaaacaaaacaaaataaaataaaattaagtgaaagagaggtgaa 10033693  T
Q  196 atttaccaaacggtgtcgtttgga 219  Q
    ||||||| |||||| |||||||||    
T  10033692 atttacctaacggtttcgtttgga 10033669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 20976280 - 20976104
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataatcaatag 143  Q
    ||||| |||||||| |||||| ||||||||||||  ||  || |||| |||| ||  ||||||||||| || || |||||||||||||||||||||  ||    
T  20976280 aaataggaggctcggctctctatttaaaataggccacc--aatataaaaacgcaatttttttgtgtagctatgc-tttattaaaaaatcataatcagaag 20976184  T
Q  144 aacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    | ||| |||||||  ||| ||||| ||||  | ||||||||||||||||  |||||| | ||||||||| |||||||||||    
T  20976183 agcttttaaacattgaaccaaatacaaaaaaattaagtgaaagagaggtagaattta-ctaacggtgtcatttggatttgt 20976104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 42291703 - 42291807
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaat--aaaaaattaataagtgaaagagaggtgaaatt 198  Q
    ||||||||||||||| |||| || ||||||||| |||||  ||| |||||||||||||||||||||  ||||||  | ||||||||||||||||  ||||    
T  42291703 tttttgtgtagttaaacttt-ataaaaaaatcagaatcagaagagcttctaaacatgaaacgaaatacaaaaaaaaattaagtgaaagagaggtagaatt 42291801  T
Q  199 taccaa 204  Q
    ||||||    
T  42291802 taccaa 42291807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 26377622 - 26377717
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| |||||||||||||| ||| ||||||  || |||||||||||||  ||||||||| | |||||||||||||||||||||    
T  26377622 aaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaaa--tattaagtgaaagaga--tgaaatttatctaacggtgtcgtttggatttgt 26377717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 138384 - 138285
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||| |||| ||| ||||| |||||| |||||| ||||||| |||||| ||||| ||| |||| |  | ||||||||||||||||||||||||    
T  138384 tttttgtgtagctaag-tttcattaagaaatcaaaatcaaaagaacttttaaacaggaaacaaaacaaaataaaattaagtgaaagagaggtgaaattta 138286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 7390229 - 7390340
Alignment:
Q  105 tgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    ||||||| |||||||  |||||||||||  |||||  ||||||| ||||||| |||| ||| |||| |  | |||||||||||||||||||||||| | |    
T  7390229 tgtgtagctaagcttc-attaaaaaatcggaatcagaagaacttttaaacataaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttatcta 7390327  T
Q  205 acggtgtcgtttg 217  Q
    |||||||||||||    
T  7390328 acggtgtcgtttg 7390340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 13424081 - 13423984
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||| ||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | ||||||||||||| |||||||    
T  13424081 aaaaaatcagaatcagaagaacttttaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaatttatcgaacggtgtcgtttagatttgt 13423984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 26312204 - 26312108
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  26312204 aaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 26312108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 40779382 - 40779309
Alignment:
Q  150 taaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||| |||||||||||  | |||||||||||||||||||||||||| || | |||||||| |||||||    
T  40779382 taaacatgaaatgaaataaaaaaa-attaagtgaaagagaggtgaaatttacctaatgatgtcgtttcgatttgt 40779309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 12661524 - 12661429
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  ||| |||||||||| | ||| |||||||||||||||||    
T  12661524 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaa--attaagtgaa--agatgtgaaatttatctaacagtgtcgtttggatttgt 12661429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 931567 - 931512
Alignment:
Q  144 aacttctaaacatgaaacgaaat--aaaaaattaataagtgaaagagaggtgaaat 197  Q
    |||||||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  931567 aacttctaaacatgaaacgaaattaaaaaaaatattaagtgaaagagaggtgaaat 931512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 4734428 - 4734527
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaata-aaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttg 223  Q
    ||||||| | |||||| ||| |||||||||||||||||||||| |||||  | ||||||||||||| ||  |||||| | ||||||||| ||||||||||    
T  4734428 aaaaaattaaaatcaaaagagcttctaaacatgaaacgaaatacaaaaaaaattaagtgaaagagatgtagaattta-ctaacggtgtcatttggatttg 4734526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 19099162 - 19099258
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||| ||| |||||  ||||||||||||||||||| ||| ||| |||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  19099162 aaaaattcagaatcagaagaacttctaaacatgaaaagaattaagaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 19099258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 18873697 - 18873583
Alignment:
Q  104 ttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttacca 203  Q
    |||||||||||| |||  |||||||||| | |||||  | ||||| |||||||||||| ||| |||| |    ||||||||||| ||||||||||||||     
T  18873697 ttgtgtagttaaacttc-attaaaaaattagaatcagaaaaacttttaaacatgaaacaaaacaaaataaagttaagtgaaagaaaggtgaaatttacct 18873599  T
Q  204 aacggtgtcgtttgga 219  Q
    |||||| |||||||||    
T  18873598 aacggtttcgtttgga 18873583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 16061189 - 16061042
Alignment:
Q  53 aggctcgactctctttttaaaataggctcccggaaaataataacggaatt----tttgtgtagttaagcttttattaaaaaatcataatcaatagaactt 148  Q
    |||||||||||| |||||||||||||| |||  ||||||| |||  |||     |||||||||||||||||  |||||||||||| |||||  | || ||    
T  16061189 aggctcgactctttttttaaaataggccccct-aaaataaaaacataataaaaatttgtgtagttaagcttc-attaaaaaatcagaatcagaaaaaatt 16061092  T
Q  149 ctaaacatgaaacgaaataa--aaaattaataagtgaaagagaggtgaaa 196  Q
    |||||||||||  |||||||  ||||  |||| |||||||||||||||||    
T  16061091 ctaaacatgaatagaaataaaaaaaaaaaataggtgaaagagaggtgaaa 16061042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 13474929 - 13474750
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaatagg-ctcccggaaaataataacggaa--tttttgtgtagttaagcttttatt---aaaaaatcataatca 139  Q
    ||||| ||||||||||||||||||||||||||| |||  | ||||||| |||| ||  ||||||||||| |||  |||||||   ||||||||| ||| |    
T  13474929 aaataggaggctcgactctctttttaaaataggcctctagtaaaataa-aacgtaatttttttgtgtagctaa-attttattaaaaaaaaatcagaataa 13474832  T
Q  140 atagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
      |||| ||||||| |||||| ||| || ||||  | ||||||||  |||||| ||||||| | |||||||||||||||||||||    
T  13474831 gaagaagttctaaaaatgaaaggaattacaaaa-aattaagtgaa--agaggtaaaatttatctaacggtgtcgtttggatttgt 13474750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 37046997 - 37046901
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| ||| |  |||| |||||||||||||| ||||| |||||  | ||| ||||||||  |||||||||| | |||||||||||||||||||||    
T  37046997 aaaaaatcagaattagaagaagttctaaacatgaaa-gaaattaaaaaaaattaaatgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 37046901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 40956475 - 40956432
Alignment:
Q  181 tgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||||||||| | ||||| |||||||||||||||    
T  40956475 tgaaagagaggtgaaatttatctaacggcgtcgtttggatttgt 40956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 5829604 - 5829502
Alignment:
Q  119 tttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgg 218  Q
    ||||||||||||||| |||||  ||| |||||||||||  || |||||| ||||  | ||||||||||||||||  | |||| | ||| |||||||||||    
T  5829604 tttattaaaaaatcagaatcagaagagcttctaaacat--aatgaaatacaaaaaaattaagtgaaagagaggtagagttta-ctaacagtgtcgtttgg 5829508  T
Q  219 atttgt 224  Q
    ||||||    
T  5829507 atttgt 5829502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 13288663 - 13288613
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaa 172  Q
    ||||||||||||||||||  ||||| | |||||||||||| ||||||||||    
T  13288663 attaaaaaatcataatcagaagaacatttaaacatgaaacaaaataaaaaa 13288613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 26377541 - 26377574
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggc 79  Q
    ||||| ||||||||||||||||||||||||||||    
T  26377541 aaataggaggctcgactctctttttaaaataggc 26377574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 42312299 - 42312127
Alignment:
Q  56 ctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcataatcaatagaacttcta 151  Q
    |||||||||||||||||||||||  | | | ||||||| |||  |||||||   ||||||||||||||  |||||||||| | |||||  ||||||||||    
T  42312299 ctcgactctctttttaaaataggtccactgtaaaataaaaacacaattttttgtgtgtagttaagcttc-attaaaaaattagaatcagaagaacttcta 42312201  T
Q  152 aacatgaaacgaaataaaaaattaat-aagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||||||  ||||||||||||| |||||||    
T  42312200 aacatgaaacgaaataaaaaaaaaattaagtgaaagagaggtgaaatttacttaacggtgtcgtttagatttgt 42312127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 3799611 - 3799706
Alignment:
Q  126 aaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttg 223  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  3799611 aaaaatcagaatcagaagaacttctaaacatgaaacgaaataaaaaaat--taagtgaaagagaggtgaaatttacctaacggtgtcgtttggatttg 3799706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 40841002 - 40841190
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt-gtgtagttaagcttttattaaaaaa--tcat 134  Q
    |||||||||||||||||| ||||||||| ||||||||||||   |   ||||||| || | ||||||| |||||| |||||||| |||||||||  |||     
T  40841002 ttcctataaaatatgaggttcgactctcattttaaaataggtcacaataaaataaaaatgcaattttttgtgtagctaagcttt-attaaaaaaaatcag 40841100  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||| |  |||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||| || || ||| ||||||||||||||    
T  40841101 aattagaagaacttctaaacatgaaacgaaataaaaaaaaaataattgaaagataggtgaaattttcctaatggtctcgtttggatttgt 40841190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 29730847 - 29731026
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaatttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||||| ||||| |||||||||||||||||||||||||||| ||| | ||||||| ||     ||||| ||||| |||| ||| |||||||||||| ||    
T  29730847 ttcctatgaaataggaggctcgactctctttttaaaataggcccccagtaaaataaaaataatttttttttgtagctaag-tttcattaaaaaatcacaa 29730945  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    |||  | |||||||||||||||||||||| |||||||||    ||||||||||||||||||||||| ||| |||||||||| ||||    
T  29730946 tcagaaaaacttctaaacatgaaacgaaa-aaaaaatta----gtgaaagagaggtgaaatttacctaacagtgtcgtttgaattt 29731026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 222
Target Start/End: Complemental strand, 29742100 - 29741921
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctccc-ggaaaataataacggaatttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||||| ||||| |||||||||||||||||||||||||||| ||| | ||||||| |||    ||||| ||||| |||| ||| |||||||||||| ||    
T  29742100 ttcctatgaaataggaggctcgactctctttttaaaataggcccccagtaaaataaaaacaatttttttttgtagctaag-tttcattaaaaaatcacaa 29742002  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    |||  | |||||||||||||||||||||| ||||||||    ||| |||||||||||||||||||| ||| |||||||||| ||||    
T  29742001 tcagaaaaacttctaaacatgaaacgaaa-aaaaaatt----agtaaaagagaggtgaaatttacctaacagtgtcgtttgaattt 29741921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 773707 - 773828
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||| |||||||||||||  |||||||||||| |||||  |||||||||||||||||||||||||||||||  | ||||||||||||| ||||||||||    
T  773707 tttttatgtagttaagcttc-attaaaaaatcaaaatcagaagaacttctaaacatgaaacgaaataaaaaa-aattaagtgaaagagatgtgaaattta 773804  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
    || ||||| |||||||| ||||||    
T  773805 cctaacggcgtcgtttgaatttgt 773828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 26633603 - 26633486
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||| |||||||  |||||||||||| |||||  ||||| |||||||||||||| |||||||| |  | ||||||||||||||||||||||||    
T  26633603 tttttgtgtagctaagcttc-attaaaaaatcagaatcagaagaacgtctaaacatgaaacaaaataaaataaaattaagtgaaagagaggtgaaattta 26633505  T
Q  201 ccaaacggtgtcgtttgga 219  Q
    |  ||||||||||||||||    
T  26633504 cttaacggtgtcgtttgga 26633486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 30739365 - 30739242
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaa--aattaataagtgaaagagaggtgaaatt 198  Q
    ||||||||||| ||| |||  |||||||||||| |||||  |||||||||| |||||||| |||||||||  || ||| |||||||||||||||||||||    
T  30739365 tttttgtgtagctaaacttc-attaaaaaatcagaatcagaagaacttctatacatgaaatgaaataaaataaaataa-aagtgaaagagaggtgaaatt 30739268  T
Q  199 taccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||| |||||||||||    
T  30739267 taccaaacggtgtcatttggatttgt 30739242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 25610368 - 25610185
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa-tttttgtgtagttaagcttttattaaaaaatcataatc 138  Q
    ||||||||||| |||| |||||||||| |||||||||| | ||   ||||||| || | || ||||| ||||| ||||| ||||||||||||||| ||||    
T  25610368 cctataaaataagaggttcgactctctatttaaaatagaccccaataaaataaaaatgcaattttttttgtagctaagc-tttattaaaaaatcagaatc 25610270  T
Q  139 aatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |  ||| |||| ||||||||||||||||| ||||  | |||||||||||||| |  |||||| | |||||||||||||||||||||    
T  25610269 agaagagcttccaaacatgaaacgaaatacaaaaaaattaagtgaaagagagatagaattta-ctaacggtgtcgtttggatttgt 25610185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 36438118 - 36438292
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttttgtgt--agttaagcttttattaaaaaatcataatcaatag 143  Q
    ||||| ||||||||  ||| ||||||||||||||  | | ||||||| || | |||||||||||  || |||||||  |||||||||||| |||||  ||    
T  36438118 aaataggaggctcggttctatttttaaaataggcctcagtaaaataaaaatgcaatttttgtgtgtagctaagcttc-attaaaaaatcagaatcagaag 36438216  T
Q  144 aacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||||| |||||||||||| ||| |||| |  | ||||||||||| |||||||||||||| ||||||||| ||||||    
T  36438217 aacttttaaacatgaaacaaaacaaaataaaattaagtgaaagataggtgaaatttacctaacggtgtcatttgga 36438292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 28589907 - 28590089
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt----gtgtagttaagcttttattaaaaaatcata 135  Q
    ||||||||||| || |||||||||||||||||||| || ||   | ||||||| |||| |||||||    |||||| ||| |||  |||||||||||| |    
T  28589907 cctataaaataggatgctcgactctctttttaaaacagcct---gtaaaataaaaacgtaatttttttttgtgtagctaaacttc-attaaaaaatcaga 28590002  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||  |||| |||||||||||||| |||||| |||| |  |||||| |||||||||||| |||||| |||  ||||||||||||||||    
T  28590003 atcagaagaatttctaaacatgaaatgaaatagaaaaat--taagtggaagagaggtgaattttacctaacaatgtcgtttggatttgt 28590089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 41852060 - 41852245
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatt--tttgtgtagttaagcttttattaaaaaatcata 135  Q
    ||||||||||||| ||| ||  ||| ||  |||||||||| | || | ||||||| |||| ||||  ||||||||| |||| ||| ||||| |||||| |    
T  41852060 ttcctataaaataggagacttcactttcaatttaaaatagaccccggtaaaataaaaacgtaattgatttgtgtagctaag-tttcattaagaaatcaga 41852158  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||  ||||||| ||||| | ||||||||||||||| |  ||||||||||||| |||||||||| | |||||||||||||| ||||||    
T  41852159 atcagaagaacttttaaacgtcaaacgaaataaaaaaat--taagtgaaagagatgtgaaatttatctaacggtgtcgtttgaatttgt 41852245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 1366249 - 1366135
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||| |||||||| |||||||||||| |||||  ||| ||| |||||||||||||||||| ||||  | ||||||||||||||||  ||||||    
T  1366249 tttttgtgtagctaagcttt-attaaaaaatcagaatcagaagagcttgtaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta 1366151  T
Q  201 ccaaacggtgtcgtttg 217  Q
     ||||||||||| ||||    
T  1366150 -caaacggtgtcatttg 1366135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 32957074 - 32956894
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggc-tcccggaaaataataacggaattttt---gtgtagttaagcttttattaaaaaatca 133  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||   ||||||| |  | |||||||   ||| || |||||||  ||||||||||||    
T  32957074 ttcctataaaataggaggctcaactctctttttaaaataggcctccaataaaataaaactgcaattttttttgtgaagctaagcttc-attaaaaaatca 32956976  T
Q  134 taatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     || ||| |||||||||||||||||||| ||| ||||         |||||||| |||||||||||||| ||| |||||||||||||||||    
T  32956975 aaaccaaaagaacttctaaacatgaaaccaaaaaaaa---------gtgaaagataggtgaaatttacctaacagtgtcgtttggatttgt 32956894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 33418938 - 33419061
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaa---tcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaat 197  Q
    |||||||||||||||  |||||||||||||   ||| |||||  |||| |||||||||||||  ||| |||||||  ||||||||||||||  |||||||    
T  33418938 tttttgtgtagttaaa-ttttattaaaaaaaaatcagaatcagaagaagttctaaacatgaatggaattaaaaaaaaaataagtgaaagag--gtgaaat 33419034  T
Q  198 ttaccaaacggtgtcgtttggatttgt 224  Q
    ||| | |||||||||||||||||||||    
T  33419035 ttatctaacggtgtcgtttggatttgt 33419061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 12251135 - 12251232
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | ||||||| |||||||||||||    
T  12251135 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--agaggtgaaatttatctaacggtgacgtttggatttgt 12251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 40001535 - 40001656
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||||||||||||||||| |||| ||||  | ||| |  ||| |||||||||||||||||||||| ||||  | ||||||||||||||||| ||||||    
T  40001535 tttttgtgtagttaagcttt-attagaaaaatagaattagaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtggaattta 40001633  T
Q  201 ccaaacggtgtcgtttggatttgt 224  Q
     | ||||| |||||||| ||||||    
T  40001634 -ctaacggcgtcgtttgaatttgt 40001656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 44876021 - 44876103
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaa-taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||| |||||||||||  || |||||||||||||| ||||||||||| ||  |||||||||||||||||    
T  44876021 agaacttctaaacatgaaatgaaataaaaaaaaaattaagtgaaagagagatgaaatttacctaa-agtgtcgtttggatttgt 44876103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 33910363 - 33910184
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaat--ttttgtgtagttaagctt--ttattaaaaaatcataatcaa 140  Q
    ||||| |||||||| ||||||||||||||||||| ||  | ||||||| |||| |||  |||||||||| ||| |||  |||  ||||||||| ||| |     
T  33910363 aaataggaggctcggctctctttttaaaataggcccctagtaaaataa-aacgtaatatttttgtgtagctaaacttcattaaaaaaaaatcagaataag 33910265  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     | ||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  33910264 aataacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 33910184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 18015428 - 18015524
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| ||| |  ||||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| |||||||||||||||| ||||||    
T  18015428 aaaaaatcagaattagaagaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatcaaacggtgtcgtttgaatttgt 18015524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 40737829 - 40737939
Alignment:
Q  105 tgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    ||||||| |||||||  |||||||| ||| |||||| ||||||| |||| ||||||| |||||||| |  |  ||||||||||||||||||||||||| |    
T  40737829 tgtgtagctaagcttc-attaaaaagtcagaatcaaaagaacttttaaa-atgaaacaaaataaaataaaataaagtgaaagagaggtgaaatttaccta 40737926  T
Q  205 acggtgtcgtttg 217  Q
    |||||||| ||||    
T  40737927 acggtgtcatttg 40737939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 42160970 - 42161066
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  | ||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  42160970 aaaaaatcagaatcagaataacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 42161066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 21145554 - 21145475
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| || |||||||||||||||||||| |  |||||||||| ||||||||||||||| ||| |||||||||| ||||||    
T  21145554 agaacttttatacatgaaacgaaataaaaaaat--taagtgaaagggaggtgaaatttacctaac-gtgtcgtttgaatttgt 21145475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 41908394 - 41908300
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggat 220  Q
    ||||||||| |||||  | |||||||||||||||||| ||||||||||  | ||||||||| |||||||||||||| | |||| | ||||||||||    
T  41908394 aaaaaatcagaatcagaaaaacttctaaacatgaaacaaaataaaaaa-aattaagtgaaaaagaggtgaaatttatctaacgatatcgtttggat 41908300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 44002777 - 44002828
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaat 173  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||||||||||    
T  44002777 attaaaaaattataatcagaagaacttctaaacatgaaatgaaataaaaaat 44002828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 6379850 - 6380028
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaaaaaa--tcataatcaa 140  Q
    |||||||||||||| ||| ||||||||||||||| |   | ||||||| |||| |||||||  |||||||||| |||  |||||||||  ||| |||| |    
T  6379850 aaatatgaggctcggctcactttttaaaataggcccatagtaaaataa-aacgtaatttttttgtgtagttaaacttc-attaaaaaaaatcagaatcga 6379947  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     |||||||||||| |||||| ||| |||||||  | ||||||||  |||||||||||||| | |||  ||||||||||||||||    
T  6379948 aagaacttctaaatatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatccaacaatgtcgtttggatttgt 6380028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 7366852 - 7366810
Alignment:
Q  177 taagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  7366852 taagtgaaagagaggtgaaatttaccttacggtgtcgtttgga 7366810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 36796219 - 36796315
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| ||||||||| |||| ||| |||||||  | ||||||||||||  |||||||||| | ||||||||||||| |||||||    
T  36796219 aaaaaatcagaatcagaagaagttctaaaca-gaaatgaattaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgtcgttttgatttgt 36796315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 11672785 - 11672706
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| |||||| |||||||| |||||||    
T  11672785 agaagttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatcaaacgatgtcgtttagatttgt 11672706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 44875919 - 44875957
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaatagg 78  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  44875919 cctatgaaataggaggctcgactctctttttaaaatagg 44875957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 7636171 - 7636269
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaa-taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttg 223  Q
    ||||||||| |||||  | ||||||||||||||||| ||| |||||||  || ||||||||  | |||||||||||| | |||||| ||||||| |||||    
T  7636171 aaaaaatcagaatcagaacaacttctaaacatgaaaggaattaaaaaaaaaattaagtgaa--aaaggtgaaatttatctaacggtatcgtttgaatttg 7636268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 44893877 - 44893973
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||||  |||| || ||| ||||||| ||| |||||||  | ||||||||||||  ||||||||||   |||||||||||||| ||||||    
T  44893877 aaaaaatcataatcagaagaagttgtaagcatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatgtaacggtgtcgtttgaatttgt 44893973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 40151890 - 40152071
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatt--tttgtgtagttaagcttttattaaaaaatcata 135  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||  ||||||| ||   ||||  |||||||||||||||||  |||||||||||| |    
T  40151890 ttcctatgaaataggaggctcgactctctttttaaaatagactccct-aaaataaaaatataattgttttgtgtagttaagcttc-attaaaaaatcaga 40151987  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggat 220  Q
    ||||  | ||||| |||| ||||||||||||||||||  | ||| |||||||||||||||||||||| || ||||| ||||||||    
T  40151988 atcataaaaacttttaaatatgaaacgaaataaaaaaa-attaaatgaaagagaggtgaaatttacctaaaggtgttgtttggat 40152071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 46905048 - 46904865
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||| ||||| ||||||||  ||| ||||||||||||| ||| | ||||||| ||   |||||||   ||||||  ||||||  ||||||||||||     
T  46905048 ttcctatgaaataggaggctcggttctatttttaaaataggttccagtaaaataaaaattcaattttttatgtgtagcgaagcttc-attaaaaaatcag 46904950  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||| |  ||||||| |||||||||||| ||| |||| |  | |||||||||||||||||||||||||| ||||||||||||||||    
T  46904949 aataagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttacctaacggtgtcgtttgga 46904865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 27303425 - 27303310
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||| |||||||||||  |||||||||||| |||||  ||||||| |||||||||||| ||| |||| |  | ||||||||||||||||||||||||    
T  27303425 tttttgtatagttaagcttc-attaaaaaatcagaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaattta 27303327  T
Q  201 ccaaacggtgtcgtttg 217  Q
    || || |||||||||||    
T  27303326 cctaatggtgtcgtttg 27303310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 43905613 - 43905798
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggctccc-ggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| ||||||||||||||| |||||||||| | |||   ||||||| |||| ||  ||||||||| ||||||| |||| |||||||  | ||    
T  43905613 cctatgaaataggaggctcgactctctatttaaaatagacccccaataaaataaaaacgcaatttttttgtgttgttaagc-tttactaaaaaaatagaa 43905711  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||  ||| |||||||||||||||||||||| ||||  | ||||||||||||||||  |||||| | ||||||||| |||||||||||    
T  43905712 tcataagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta-ctaacggtgtcatttggatttgt 43905798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 7767372 - 7767189
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt---gtgtagttaagcttttattaaaaaatcat 134  Q
    ||||||| ||||| ||||||||  ||| |||||||||||||| |  | || |||| |||| | |||||   |||||| |||||||  |||||||| |||     
T  7767372 ttcctatgaaataggaggctcggttctatttttaaaataggcccaagtaagataaaaacgcatttttttgtgtgtagctaagcttc-attaaaaagtcag 7767274  T
Q  135 aatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    |||||  ||||||| |||||||||||| |||||||| |  | ||||||||||||| |||||||||||| ||| ||||| ||||||    
T  7767273 aatcagaagaacttttaaacatgaaacaaaataaaataaaattaagtgaaagagatgtgaaatttacctaactgtgtcatttgga 7767189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 19965725 - 19965801
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttacc 202  Q
    |||| |||| |||||  ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  19965725 aaaatatcaaaatcagaagaacttctaaacatgaaaggaaataaaaaa-aaataagtgaaagagaggtgaaatttacc 19965801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 48626789 - 48626975
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggc-tcccggaaaataataacggaattttt--gtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| ||||||||  ||||| |||||||||||| | |   ||||||| |||| |||||||  |||||||||| |||| || ||||||| | ||    
T  48626789 cctatgaaataggaggctcggttctctatttaaaataggccttcaataaaataaaaacgcaatttttttgtgtagttaaacttt-ataaaaaaattagaa 48626887  T
Q  137 tcaatagaacttctaaacatgaaacgaaata-aaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||  ||| |||||||||||||||||||||| |||||  ||||||||||||||||||  |||||| | ||| ||||| |||||||||||    
T  48626888 tcagaagagcttctaaacatgaaacgaaatacaaaaaaaaataagtgaaagagaggtagaattta-ctaacagtgtcatttggatttgt 48626975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 52654888 - 52655067
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctccc--ggaaaataataacggaattttt--gtgtagttaagcttttattaaaaaa--tcataatca 139  Q
    ||||| ||||||| ||||||||||||||||||| ||||  | ||||||| |||| |||||||  ||||||||||  ||| |||||||||  | | |||||    
T  52654888 aaataggaggctcaactctctttttaaaatagg-tccctagtaaaataa-aacgtaatttttttgtgtagttaaa-tttcattaaaaaaaattagaatca 52654984  T
Q  140 atagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
      ||||||||||||||||||| ||| |||||||  ||||||||||  |||||||||||||| | |||||| ||||||| ||||||    
T  52654985 gaagaacttctaaacatgaaaggaattaaaaaaaaaataagtgaa--agaggtgaaatttatctaacggtatcgtttgaatttgt 52655067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 18408390 - 18408311
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| |||||||||||||||||||||||    
T  18408390 agaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatcaaacggtgtcgtttggatttgt 18408311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 51939327 - 51939499
Alignment:
Q  53 aggctcgactctctttttaaaataggctcccggaaaataataacggaattttt--gtgtagttaagctt--ttattaaaaaatcataatcaatagaactt 148  Q
    ||||||||||||||||||||||||||||||    |||  |||||| |||||||  |||||| |||  ||  |||  ||||||||| ||| |  |||||||    
T  51939327 aggctcgactctctttttaaaataggctcctattaaaatataacgtaatttttttgtgtagctaaatttcattaaaaaaaaatcagaatgagaagaactt 51939426  T
Q  149 ctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||| |||||||||||||||||    
T  51939427 ctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttaaccaactgtgtcgtttggatttgt 51939499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 46791562 - 46791641
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  46791562 agaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 46791641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 15998482 - 15998415
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgt 211  Q
    |||||||||||||||||||||||| | |||| |  ||||||||||||| |||||||||||| ||||||||    
T  15998482 agaacttctaaacatgaaacgaaacagaaaaat--taagtgaaagagatgtgaaatttacctaacggtgt 15998415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 51147177 - 51147060
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    |||||| |||| |||||||  ||||||||||||||||||  ||||||  |||||| ||||| ||| |||| |  |  ||||||||||||| | |||||||    
T  51147177 tttttgcgtaggtaagcttc-attaaaaaatcataatcagaagaactcttaaacacgaaacaaaacaaaataaaatgaagtgaaagagagataaaattta 51147079  T
Q  201 ccaaacggtgtcgtttgga 219  Q
    || ||||||||||||||||    
T  51147078 cctaacggtgtcgtttgga 51147060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 25598840 - 25599031
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaatagg-ctcccggaaaataataacggaa--tttttgtgtagttaagctt--ttattaaaaaatc 132  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||   | ||||||| |||| ||  ||||||||||| ||| |||  |||  ||||||||    
T  25598840 ttcctataaaataggaggctcggctctctttttaaaataggtctttagtaaaataa-aacgtaatttttttgtgtagctaaacttcatta-aaaaaaatc 25598937  T
Q  133 ataatcaatagaacttctaaacatgaaacgaaataaaaaattaa----taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    | |||||  |||||||||||||||||||  || |||||||  ||    ||||||||  |||||||||||||| | |||||||||||||| ||||||    
T  25598938 agaatcagaagaacttctaaacatgaaagaaattaaaaaaaaaaaaattaagtgaa--agaggtgaaatttatctaacggtgtcgtttgaatttgt 25599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 8364389 - 8364293
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| | |||||  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  8364389 aaaaaattagaatcagaagaagttctaaacatgaaaggaattaaaaaac-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 8364293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 23164420 - 23164516
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| | |||||  |||||||||||| |||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  23164420 aaaaaattagaatcagaagaacttctaaatatgaaaagaattaaaaaaa-attaagtgaaagag--gtgaaatttatccaacggtgtcgtttggatttgt 23164516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 24252837 - 24252740
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| | |||||  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||||| |||||||||||||||    
T  24252837 aaaaaattagaatcagaagaagttctaaacatgaaaggaattaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggggtcgtttggatttgt 24252740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 27729617 - 27729713
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| | |||||  ||||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||| |||||||||||||||||    
T  27729617 aaaaaattaaaatcagaagaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacagtgtcgtttggatttgt 27729713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 21596554 - 21596505
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaa 171  Q
    |||||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  21596554 attaaaaaatcagaatcaaaagaacttctaaacatgaaatgtaataaaaa 21596505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 27110723 - 27110816
Alignment:
Q  128 aaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||| |||||  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||| ||||||    
T  27110723 aaatcagaatcataagaagttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttgaatttgt 27110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 29387601 - 29387698
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaat-aagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttg 223  Q
    ||||||||| |||||  ||||||| ||||||||||| ||| |||||||  ||| |||||||||||  |||||||||| | |||||||| |||||||||||    
T  29387601 aaaaaatcagaatcagaagaacttataaacatgaaa-gaattaaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgttgtttggatttg 29387697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 1254924 - 1254988
Alignment:
Q  147 ttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgt 211  Q
    |||||||||||||||||||||||||   | |||| |||| ||||||||||| |||| ||||||||    
T  1254924 ttctaaacatgaaacgaaataaaaagaaattaagcgaaaaagaggtgaaatctacctaacggtgt 1254988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 21784546 - 21784727
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt--gtgtagttaagcttttattaaaaaa--tcataatcaat 141  Q
    ||||| |||| ||||||||||||||||||||||     | ||||||| |||| |||||||  ||||||||||  ||| |||||||||  ||| ||||||     
T  21784546 aaataggaggttcgactctctttttaaaataggtcatagtaaaataa-aacgtaatttttttgtgtagttaaa-tttcattaaaaaaaatcagaatcaaa 21784643  T
Q  142 agaacttctaa----acatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||    |||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||||| |||||||||||||||    
T  21784644 agaacttctaattaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggcgtcgtttggatttgt 21784727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 29387514 - 29387545
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaatag 77  Q
    ||||||||||||||||||||||||||||||||    
T  29387514 aaatatgaggctcgactctctttttaaaatag 29387545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 41706917 - 41706996
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||| ||| |||||||  | ||||||||  || ||||||||||| | |||| ||||||||||||||||    
T  41706917 agaacttctaaacatgaaaagaattaaaaaa-aattaagtgaa--aggggtgaaatttatctaacgttgtcgtttggatttgt 41706996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 13401758 - 13401724
Alignment:
Q  44 taaaatatgaggctcgactctctttttaaaatagg 78  Q
    ||||||| |||||||||||||||||||||||||||    
T  13401758 taaaataggaggctcgactctctttttaaaatagg 13401724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 23067573 - 23067666
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    ||||||||| |||||  |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||||||||| |||||||||    
T  23067573 aaaaaatcaaaatcagaagaagttctaaacatgaaaggaa-taaaaaag-attaagtgaaagag--gtgaaatttatctaacggtgtcatttggattt 23067666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 28132587 - 28132673
Alignment:
Q  128 aaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttg 217  Q
    |||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | ||||| ||||||||    
T  28132587 aaatcaaaatcagaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaacggcgtcgtttg 28132673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 54430762 - 54430672
Alignment:
Q  133 ataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgt-cgtttggatttgt 224  Q
    |||||||  ||||||||||||||||||| ||| |||||||  | ||||||||  | |||||||||||| | |||||| | |||||||||||||    
T  54430762 ataatcagaagaacttctaaacatgaaaggaattaaaaaaaaattaagtgaa--aaaggtgaaatttatctaacggtatccgtttggatttgt 54430672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 1649705 - 1649749
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaa-aaattaataagtgaaa 185  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  1649705 agaacttctaaacatgaaacgaaataaagaaaaaaataagtgaaa 1649749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 8364470 - 8364438
Alignment:
Q  47 aatatgaggctcgactctctttttaaaataggc 79  Q
    |||| ||||||||||||||||||||||||||||    
T  8364470 aataggaggctcgactctctttttaaaataggc 8364438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 20762266 - 20762169
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| ||||   |||||||||||| |||||| ||| |||||||  | ||||||||  ||||||||||||||   |||||| ||||||| ||||||    
T  20762266 aaaaaatcagaatcggaagaacttctaaatatgaaatgaattaaaaaaaaattaagtgaa--agaggtgaaatttattcaacggtatcgtttgtatttgt 20762169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 27110635 - 27110667
Alignment:
Q  45 aaaatatgaggctcgactctctttttaaaatag 77  Q
    |||||| ||||||||||||||||||||||||||    
T  27110635 aaaataggaggctcgactctctttttaaaatag 27110667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 11088872 - 11088694
Alignment:
Q  41 ctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataatc 138  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||  ||||||| ||   ||  ||||||||||| ||| |||  |||||||||||| |||     
T  11088872 ctatgaaataggaggctcaactctctttttaaaataggccccct-aaaataaaaatataaattttttgtgtagctaaacttc-attaaaaaatcagaatt 11088775  T
Q  139 aatagaacttctaaacatgaaacgaaataaaaaattaa-taagtgaaagagaggtgaaatttaccaaacggtgtcgtttgg 218  Q
    |  |||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||| |||| ||||||    
T  11088774 agaagaacttctaaacatgaaacgaaataaaaaaagaattaagtgaaagagaggtgaaatttacctaacagtgttgtttgg 11088694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 29308233 - 29308410
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaaaaaatcataatcaata 142  Q
    ||||| |||||||| |||||| |||||||||||| |||   ||||||| |||| |||||||  ||||||||||||||| |||||||||||| |||||  |    
T  29308233 aaataggaggctcggctctctatttaaaataggcccccaataaaataaaaacgcaatttttttgtgtagttaagcttt-attaaaaaatcagaatcataa 29308331  T
Q  143 gaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    || |||||||||||||||||||||| ||||  | ||||||||||||||||  |||||| | ||||||||| ||| |||||    
T  29308332 gagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta-ctaacggtgtcatttagattt 29308410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 6294471 - 6294377
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||| |  | || ||||||||||||||||||||||| ||||||||||||||||    
T  6294471 aaaaaatcagaatcaaaagaacttctaaacatgaaacaaaataaaataaaattatgtgaaagagaggtgaaatttacctaacggtgtcgtttgga 6294377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 30915120 - 30915300
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttttgt--gtagttaagcttttattaaaaaatcata 135  Q
    ||||||| ||||| ||||||| ||||||||||||||||||| | | | ||||||| || | | ||||| |  ||||||||||||  |||||||||||| |    
T  30915120 ttcctatgaaataagaggctcaactctctttttaaaataggtttcagtaaaataaaaatgtattttttatttgtagttaagcttc-attaaaaaatcaga 30915218  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttg 217  Q
    ||||  ||||||| |||||||||||| |||||||| |  | |||||||||||||| | ||||||||  ||||||||||||||    
T  30915219 atcagaagaacttataaacatgaaacaaaataaaataaaattaagtgaaagagagataaaatttacataacggtgtcgtttg 30915300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 350719 - 350535
Alignment:
Q  41 ctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataatc 138  Q
    |||| ||||| |||| |||||||||||||||||||||| ||||  ||||||| |||  ||  ||||||||||| ||| |||  |||||||||| | |||     
T  350719 ctatgaaataggaggttcgactctctttttaaaatagg-tcccctaaaataaaaacataacttttttgtgtagctaaacttc-attaaaaaattagaatt 350622  T
Q  139 a-atagaacttctaaacatgaaacgaaataaaaaattaataagtgaaag--agaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    | | |||||||||||||||||||||||||||||||  | ||| ||||||  | ||||||||||||||  |||||||||||| |||||    
T  350621 agaaagaacttctaaacatgaaacgaaataaaaaaaaattaaatgaaagatataggtgaaatttacctgacggtgtcgttttgattt 350535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 1092801 - 1092986
Alignment:
Q  40 cctataaaatatgaggctcgactctctttttaaaataggc-tcccggaaaataataacggaatttttgt--gtagttaagcttttattaaaaaatcataa 136  Q
    ||||| ||||| ||||||||  ||||| |||||||||||| ||    ||||||| |||| ||||||| |  |||| |||||||| |||||||||| | ||    
T  1092801 cctatgaaataggaggctcggttctctatttaaaataggcctctaataaaataaaaacgcaatttttttatgtagctaagcttt-attaaaaaattagaa 1092899  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||| ||| |||||||||||||||||||||| ||||  | ||||||||||||| ||  |||||| | ||||||||| |||||||||||    
T  1092900 tcaaaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagatgtagaattta-ctaacggtgtcatttggatttgt 1092986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 6360975 - 6360879
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||| ||||||||||||||||||| ||| |||||||  |||||||||||||||  ||||||||| | |||||||||||||| ||||||    
T  6360975 aaaaaatcaaaatcaaaagaacttctaaacatgaaaggaattaaaaaa-aaataagtgaaagaga--tgaaatttatctaacggtgtcgtttgaatttgt 6360879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 57892 - 57808
Alignment:
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||| |||||||||||| |||||| ||| ||||||| |  ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  57892 atcaaaagaacttctaaatatgaaaggaattaaaaaaat--taagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 57808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 2618651 - 2618475
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaaaaaa-tcataatcaat 141  Q
    ||||| |||| ||| ||||||||||||||||||| ||  | ||||||| |||| |||||||  ||||||||||  ||| ||||||||| ||| ||| |      
T  2618651 aaataggaggttcggctctctttttaaaataggcccctagtaaaataa-aacgtaatttttttgtgtagttaaa-tttcattaaaaaaatcagaataaga 2618554  T
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| |||||||||||  || ||||||| |  ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  2618553 agaacttttaaacatgaaagcaattaaaaaaat--taagtgaaagag--gtgaaatttatccaacggtgtcgtttggatttgt 2618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 185
Target Start/End: Original strand, 1690478 - 1690624
Alignment:
Q  41 ctataaaatatgaggctcgactctctttttaaaatagg-ctcccggaaaataataacggaa--tttttgtgtagttaagcttttattaaaaaatcataat 137  Q
    |||| ||||| |||||||| |||||| ||||||||||| ||||   ||||||| || | ||  ||||||||||| ||| | ||||| ||||||||| |||    
T  1690478 ctatgaaataggaggctcggctctctatttaaaataggcctccaataaaataaaaatgcaatttttttgtgtagctaaac-tttataaaaaaatcagaat 1690576  T
Q  138 caatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaa 185  Q
    ||  | | |||||||||||||||||||||| |||| || |||||||||    
T  1690577 cagaaaagcttctaaacatgaaacgaaatacaaaaatattaagtgaaa 1690624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 3514698 - 3514792
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    ||||||||| |||||  ||||||| ||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | || ||||||||||||||||    
T  3514698 aaaaaatcagaatcagaagaacttttaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaatggtgtcgtttggattt 3514792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 3748396 - 3748509
Alignment:
Q  105 tgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    ||||||| |||||||  |||||||| ||| |||||  ||||||| |||| ||||||  ||| |||| |  | ||||||||||||| |||||||||||| |    
T  3748396 tgtgtagctaagcttc-attaaaaagtcaaaatcagaagaacttttaaatatgaaataaaacaaaataaaattaagtgaaagagatgtgaaatttaccta 3748494  T
Q  205 acggtgtcgtttgga 219  Q
    |||||||| ||||||    
T  3748495 acggtgtcatttgga 3748509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 21946270 - 21946230
Alignment:
Q  177 taagtgaaagagaggtgaaatttaccaaacggtgtcgtttg 217  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  21946270 taagtgaaagagaggtggaatttacctaacggtgtcgtttg 21946230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 29401437 - 29401404
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggc 79  Q
    ||||| ||||||||||||||||||||||||||||    
T  29401437 aaataggaggctcgactctctttttaaaataggc 29401404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 12614479 - 12614515
Alignment:
Q  44 taaaatatgaggctcgactctctttttaaaataggct 80  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  12614479 taaaataggaggttcgactctctttttaaaataggct 12614515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 5545625 - 5545448
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttttgt-gtagttaagcttttattaaaaaatcataatcaataga 144  Q
    ||||| ||||||||||||||||||||||||||||||| | ||| ||| |||| ||||||| | |||| |||| ||   | ||||||| | |||||  |||    
T  5545625 aaataggaggctcgactctctttttaaaataggctccagaaaagtaaaaacgtaattttttttgtagctaagattcagtaaaaaaat-agaatcagaaga 5545527  T
Q  145 acttctaaacatgaaacgaaataaaaaattaa-taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||||||||||||||||||||||  || ||||||||  ||| |||||||||||| |||||||||||||| ||||||    
T  5545526 acttctaaacatgaaacgaaataaaaaaaaaattaagtgaa--agacgtgaaatttacctaacggtgtcgtttgaatttgt 5545448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 21791308 - 21791491
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaatttt--tgtgtagttaagcttttattaaaaaatcata 135  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||  || | ||||||  |||| || ||| | |||||| |||||| | |    
T  21791308 ttcctatgaaatatgaggctcgactctctttttaaaataggctccagtaaaatagaaatgcaatttttctgtgcagctaaac-tttatt-aaaaattaga 21791405  T
Q  136 atcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    ||||  ||||||||||||||||||| ||||||||| |  |  || | |||||||||||||||||||| |||  |||||||||||||    
T  21791406 atcagaagaacttctaaacatgaaatgaaataaaataaaataaatttaaagagaggtgaaatttacctaacaatgtcgtttggatt 21791491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 26328790 - 26328975
Alignment:
Q  38 ttcctataaaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaa-tttttgtgtagttaagcttttattaaaaaatcataa 136  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||||  ||||||| |||  || ||||||||||| ||| |||   | ||||||||| ||    
T  26328790 ttcctatgaaataggaggttcgactctctttttaaaataggctccc-taaaataaaaacataattttttgtgtagctaaacttcattaaaaaaatcagaa 26328888  T
Q  137 tcaatagaacttctaaacatgaaacgaaataaaaaattaa-taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    | |  |||| |||||||||||||| |||||||||||  || ||||| |||||||||||||||||||| ||  |||||||||| ||||    
T  26328889 ttagaagaatttctaaacatgaaaagaaataaaaaaagaattaagtaaaagagaggtgaaatttacctaaaagtgtcgtttgaattt 26328975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 55134523 - 55134330
Alignment:
Q  30 cagagccattcctataaaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaa 126  Q
    ||||||| | ||||| |||||||||||||| |||||| |||||||||||  |||   ||||||| |||  |||||||  |||||| |||||||| |||||    
T  55134523 cagagccgtccctatgaaatatgaggctcggctctctatttaaaataggtccccaataaaataaaaacacaatttttttgtgtagctaagcttt-attaa 55134425  T
Q  127 aaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggattt 222  Q
    |||||||  ||||| ||| |||||||||||||||||||||| ||||  | ||||||||||||||||  |||||| | ||| ||||| |||||||||    
T  55134424 aaaatcaggatcaaaagagcttctaaacatgaaacgaaatacaaaaaaattaagtgaaagagaggtagaattta-ctaacagtgtcatttggattt 55134330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 27632697 - 27632518
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagctt--ttattaaaaaatcataatcaa 140  Q
    ||||| |||||||| ||||| ||||||||||||| ||  | ||||||| |||| |||||||  |||||||||| |||  |||  ||||||||| |||||     
T  27632697 aaataggaggctcggctctcattttaaaataggcccctagtaaaataa-aacgtaatttttttgtgtagttaaacttcattaaaaaaaaatcagaatcag 27632599  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | |||||||| ||||||||||||    
T  27632598 aagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaacggtgttgtttggatttgt 27632518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 41038465 - 41038370
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| ||||||| |  ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  41038465 aaaaaatcaaaatcagaagaacttctaaacatgaaaggaattaaaaaaat--taagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 41038370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 53012013 - 53011832
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaattttt--gtgtagttaagcttttattaaaaaa--tcataatcaa 140  Q
    ||||| |||||||| |||||||||||||||||||||   | ||||||| |||| |||||||  |||||| |||  ||| |||||||||  ||| |||||     
T  53012013 aaataggaggctcggctctctttttaaaataggctcatagtaaaataa-aacgtaatttttttgtgtagctaaa-tttcattaaaaaaaatcagaatcag 53011916  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaa--taagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     ||||||||||||||||||| ||| |||||||  ||  ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  53011915 aagaacttctaaacatgaaaggaattaaaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 53011832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 16887831 - 16887927
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||||  | |||||||||| |||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  16887831 aaaaaatcataatcagaataacttctaaatatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 16887927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 19661595 - 19661499
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||| || |||||  ||||||||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||||||||||    
T  19661595 aaaaaaacagaatcagaagaacttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 19661499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 35653808 - 35653919
Alignment:
Q  105 tgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaa 204  Q
    |||||||||||||||  |||||||| ||  |||||  ||||||| |||||||||||| ||| |||| |  | |||||||||||||||||||||||| | |    
T  35653808 tgtgtagttaagcttc-attaaaaagtccgaatcagaagaacttttaaacatgaaacaaaacaaaataaaattaagtgaaagagaggtgaaatttatcta 35653906  T
Q  205 acggtgtcgtttg 217  Q
    |||||||| ||||    
T  35653907 acggtgtcatttg 35653919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 11681507 - 11681686
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaa--tttttgtgtagttaagcttttattaaaaaa--tcataatcaa 140  Q
    ||||| |||||||||||||||||||||||||||| ||  | ||||||| |||  ||  ||||||||||| |||  ||| |||||||||  ||| |||||     
T  11681507 aaataggaggctcgactctctttttaaaataggcccctagtaaaataa-aacataacttttttgtgtagctaaa-tttcattaaaaaaaatcagaatcag 11681604  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     | || |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||| ||||||||||||    
T  11681605 aaaaagttctaaacatgaaaggaattaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgttgtttggatttgt 11681686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 11689786 - 11689965
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccgg-aaaataataacggaa--tttttgtgtagttaagcttttattaaaaaa--tcataatcaa 140  Q
    ||||| |||||||||||||||||||||||||||| ||  | ||||||| |||  ||  ||||||||||| |||  ||| |||||||||  ||| |||||     
T  11689786 aaataggaggctcgactctctttttaaaataggcccctagtaaaataa-aacataacttttttgtgtagctaaa-tttcattaaaaaaaatcagaatcag 11689883  T
Q  141 tagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
     | || |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||| ||||||||||||    
T  11689884 aaaaagttctaaacatgaaaggaattaaaaaaaaattaagtgaaagag--gtgaaatttatctaacggtgttgtttggatttgt 11689965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 45172514 - 45172590
Alignment:
Q  146 cttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||  |||||| | ||||||||| |||||||||||    
T  45172514 cttctaaacatgaaacgaaatacaaaa-aaataagtgaaagagaggtagaattta-ctaacggtgtcatttggatttgt 45172590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 22423886 - 22423809
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttgga 219  Q
    ||||||| |||||||||||| ||| |||| |  | ||||||||| |||||||||||||| | ||||||||||||||||    
T  22423886 agaacttttaaacatgaaacaaaacaaaataaaattaagtgaaacagaggtgaaatttatctaacggtgtcgtttgga 22423809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 24449339 - 24449224
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||  |||||||  |||||||||||| |||||  ||||||| |||||||||||| |||||||| |  | |||||||| |||||||| | ||||    
T  24449339 tttttgtgtaactaagcttc-attaaaaaatcagaatcagaagaacttttaaacatgaaacaaaataaaataaaattaagtgaacgagaggtggagttta 24449241  T
Q  201 ccaaacggtgtcgtttg 217  Q
    || |||| |||| ||||    
T  24449240 cctaacgatgtcatttg 24449224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 34982464 - 34982366
Alignment:
Q  101 tttttgtgtagttaagcttttattaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaattta 200  Q
    ||||||||||||||||| |||||| |||||||| |||||  |||| |||||||||| |||||||||| ||||  | ||||| ||||||||||  ||||||    
T  34982464 tttttgtgtagttaagc-tttatt-aaaaatcagaatcagaagaaattctaaacataaaacgaaatacaaaaaaattaagtaaaagagaggtagaattta 34982367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 10575387 - 10575466
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatt 221  Q
    ||||||||||||||||||||||||||||| |  |  |||||||| |||| |||||||||||  |||||||| || |||||    
T  10575387 agaacttctaaacatgaaacgaaataaaataaaataaagtgaaaaagagatgaaatttacctgacggtgtcattcggatt 10575466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 23426014 - 23426110
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||| | |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | ||||| || ||||||||||||    
T  23426014 aaaaaattagaatcagaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaacggcgttgtttggatttgt 23426110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 28463436 - 28463532
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| |||||||||| ||| ||| |||||||  | ||||||||||||  |||||||||| | |||||||||||||| ||||||    
T  28463436 aaaaaatcagaatcagaagaagttctaaacatcaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttgaatttgt 28463532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 32130638 - 32130734
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | |||||||||||||  ||||||||| | ||  |||||||||| ||||||    
T  32130638 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaaagaga--tgaaatttatctaattgtgtcgtttgaatttgt 32130734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 29221469 - 29221557
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgttt 216  Q
    ||||||||| |||||  |||||||||||| |||||| ||| |||||||  | ||||||||  |||||||||||| | | |||||||||||||    
T  29221469 aaaaaatcagaatcagaagaacttctaaatatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaattaatccaacggtgtcgttt 29221557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 29580095 - 29580000
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||| |||||||||||| || ||| ||| |||||||  | ||||||||||||  |||||||||| | |||||| || |||||||||||    
T  29580095 aaaaaatcaaaatcaaaagaacttctaaatat-aaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtatcatttggatttgt 29580000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 17009 - 16829
Alignment:
Q  46 aaatatgaggctcgactctctttttaaaataggctcccggaaaataataacggaattttt--gtgtagttaagctt--ttattaaaaaatcataatcaat 141  Q
    ||||| ||||||| |||||||||||||||||||| ||  | |||  |||||| |||||||  |||||| |||  ||  |||  ||||||| | |||||      
T  17009 aaataggaggctcaactctctttttaaaataggcccctagtaaaatataacgtaatttttttgtgtagctaaatttcattaaaaaaaaattagaatcaga 16910  T
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgtt 225  Q
    |||| |||||||||||||| ||| |||||||  | ||||||||||||  |||||||||| | ||||||||||||||||||||||    
T  16909 agaagttctaaacatgaaaggaattaaaaaaa-attaagtgaaagag--gtgaaatttatctaacggtgtcgtttggatttgtt 16829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 1278 - 1181
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  |||| |||||||||||||| ||| |||||||  | ||| ||||||||  |||||||||| | |||||||||||||||||||||    
T  1278 aaaaaatcagaatcagaagaagttctaaacatgaaaggaattaaaaaaaaattaaatgaaagag--gtgaaatttatctaacggtgtcgtttggatttgt 1181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 22653 - 22749
Alignment:
Q  125 aaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    ||||||||| |||||  ||||||||||||||||||| ||| |||||||  | ||||||||  |||||||||||||| | |||||||||||||| ||||||    
T  22653 aaaaaatcagaatcagaagaacttctaaacatgaaaggaattaaaaaa-aattaagtgaa--agaggtgaaatttatctaacggtgtcgtttgaatttgt 22749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 99136 - 99086
Alignment:
Q  122 attaaaaaatcataatcaatagaacttctaaacatgaaacgaaataaaaaa 172  Q
    |||||||||||| |||||  ||||||||||||||||||||||||| |||||    
T  99136 attaaaaaatcagaatcagaagaacttctaaacatgaaacgaaattaaaaa 99086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 16998 - 17076
Alignment:
Q  142 agaacttctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||| |||||||||||||| ||| ||||||| |  ||||||||||||  |||||||||| | |||||||||||||| ||||||    
T  16998 agaagttctaaacatgaaaggaattaaaaaaat--taagtgaaagag--gtgaaatttatccaacggtgtcgtttgaatttgt 17076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 46045 - 46119
Alignment:
Q  148 tctaaacatgaaacgaaataaaaaattaataagtgaaagagaggtgaaatttaccaaacggtgtcgtttggatttgt 224  Q
    |||||| |||||| ||| |||||||  | ||||||||| ||  |||||||||| | |||||||||||||||||||||    
T  46045 tctaaatatgaaaggaattaaaaaaaaattaagtgaaacag--gtgaaatttagccaacggtgtcgtttggatttgt 46119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University