View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7729_low_16 (Length: 240)

Name: NF7729_low_16
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7729_low_16
NF7729_low_16
[»] chr8 (7 HSPs)
chr8 (22-240)||(21231235-21231461)
chr8 (24-240)||(9817595-9817814)
chr8 (16-240)||(9884289-9884516)
chr8 (42-240)||(42076887-42077092)
chr8 (69-128)||(29115134-29115193)
chr8 (67-141)||(24423750-24423825)
chr8 (99-145)||(24499434-24499481)
[»] chr4 (5 HSPs)
chr4 (22-240)||(10335430-10335655)
chr4 (22-224)||(18286115-18286321)
chr4 (61-240)||(41951472-41951659)
chr4 (26-212)||(41942478-41942671)
chr4 (45-144)||(31518547-31518649)
[»] scaffold0022 (1 HSPs)
scaffold0022 (22-223)||(2569-2777)
[»] chr3 (9 HSPs)
chr3 (73-240)||(29454257-29454430)
chr3 (22-240)||(40887990-40888213)
chr3 (29-240)||(8655603-8655810)
chr3 (31-240)||(52640701-52640913)
chr3 (25-240)||(15989769-15989987)
chr3 (67-218)||(19544034-19544187)
chr3 (97-146)||(3415560-3415610)
chr3 (99-146)||(10051163-10051211)
chr3 (69-144)||(11649941-11650017)
[»] chr1 (6 HSPs)
chr1 (26-240)||(13379443-13379664)
chr1 (22-144)||(51442934-51443055)
chr1 (61-217)||(24302451-24302597)
chr1 (96-146)||(20600965-20601016)
chr1 (94-146)||(2269105-2269158)
chr1 (22-59)||(51443160-51443197)
[»] chr7 (7 HSPs)
chr7 (30-235)||(8312293-8312505)
chr7 (22-202)||(9745755-9745945)
chr7 (94-240)||(13170026-13170178)
chr7 (22-76)||(13169981-13170035)
chr7 (74-144)||(46002220-46002291)
chr7 (99-146)||(65497-65545)
chr7 (22-59)||(13169923-13169960)
[»] chr2 (10 HSPs)
chr2 (22-240)||(22404362-22404583)
chr2 (22-223)||(16329468-16329673)
chr2 (22-240)||(27976510-27976737)
chr2 (22-240)||(28063038-28063265)
chr2 (22-239)||(29045855-29046074)
chr2 (42-211)||(16130477-16130653)
chr2 (96-146)||(19704371-19704422)
chr2 (100-146)||(19713965-19714012)
chr2 (22-59)||(22404304-22404341)
chr2 (22-58)||(16130611-16130647)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-240)||(108435-108655)
[»] scaffold0150 (1 HSPs)
scaffold0150 (82-223)||(35224-35368)
[»] scaffold0028 (1 HSPs)
scaffold0028 (82-223)||(147856-148000)
[»] chr5 (1 HSPs)
chr5 (99-147)||(31094967-31095016)
[»] chr6 (3 HSPs)
chr6 (99-146)||(22625556-22625604)
chr6 (99-146)||(29955029-29955077)
chr6 (100-146)||(12492291-12492338)
[»] scaffold1028 (1 HSPs)
scaffold1028 (99-146)||(1376-1424)
[»] scaffold0631 (1 HSPs)
scaffold0631 (99-146)||(4844-4892)
[»] scaffold0057 (1 HSPs)
scaffold0057 (99-146)||(76037-76085)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 21231461 - 21231235
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||  |||||||||||||||| |||||||||||||||||||||||    
T  21231461 atggggcgattattatcatatgccaaatgaggtgattttttattatatgccaaatgggacgattaaaactattatgccaattggggcgatatccggatca 21231362  T
Q  122 tggtcta-ttgcatttca------tgcatcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaact- 213  Q
    || |||| ||||||||||      |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||     
T  21231361 tgatctatttgcatttcatggatttgcatcatcaacattgaggctttggtcttgtgttagttcttatagcatattttagagtgatgaatattttaaacta 21231262  T
Q  214 aaaaataaattattttagcacaattcc 240  Q
    ||||| |||||||||||||||||||||    
T  21231261 aaaaagaaattattttagcacaattcc 21231235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 9817814 - 9817595
Alignment:
Q  24 ggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatg 123  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  9817814 ggggcgattattattatatgccaaatggggcgattctttattatatgccaaatggggcgattaaaactattatgtcaattggggcgatatccggatcatg 9817715  T
Q  124 gtcta-ttgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaat 219  Q
     |||| |||||||||||||||   |||||||||||| ||||  |||||||||||||||||||   |||||||| || |||||||||||| |||||||||     
T  9817714 atctatttgcatttcatgcatctgcatcaacattgaatcttgagtcttgtgtttgttcttatgttatattttaaagtgatgaatattttgaactaaaaag 9817615  T
Q  220 aaattattttagcacaattcc 240  Q
    ||| | |||||||||||||||    
T  9817614 aaa-tgttttagcacaattcc 9817595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 9884289 - 9884516
Alignment:
Q  16 caccagatggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatcc 115  Q
    ||||| |||||||||||||||| ||||||||||| ||| ||||| |||||||||| ||||| ||  |||||||||||||||| |||||||||||||||||    
T  9884289 caccaaatggggcgattattattatatgccaaattgggcgattccttattatatgtcaaatgggacgattaaaactattatgccaattggggcgatatcc 9884388  T
Q  116 ggatcatggtcta-ttgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaa 211  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||| ||| ||||| |||||||||||| ||||||||| | |||||||||||| ||    
T  9884389 ggatcatggtctatttgcatttcatgcatctgcatcaacattgagtcttgggttttgtgcttgttcttatagtatattttagtgtgatgaatattttgaa 9884488  T
Q  212 ctaaaaataaattattttagcacaattcc 240  Q
    ||||||| ||| | |||||||||||||||    
T  9884489 ctaaaaagaaa-tgttttagcacaattcc 9884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 42077092 - 42076887
Alignment:
Q  42 tgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtctatt-gcatttcatg 140  Q
    |||||||||||| |||| || |||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  42077092 tgccaaatggggcgattatt-attatatgccaaatgggacgattaaaactattatgccaattggggcgatatccggatcatggtctgtttgcatttcatg 42076994  T
Q  141 cat------catcaacattgagtctttggtcttgtgtttgttcttat-agcatattttagagggatgaatattttaaactaaaaataaattattttagca 233  Q
    |||      |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||||| |||||||| |||||    
T  42076993 catttgcatcatcaacattgagtctttggtcttgtgtttgttcttataagcatattttagagtgacaaatattttaaactaaaaagaaattattatagca 42076894  T
Q  234 caattcc 240  Q
    |||||||    
T  42076893 caattcc 42076887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 29115193 - 29115134
Alignment:
Q  69 tgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta 128  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29115193 tgccaaatgggatgattaaaattattatgtcaattggggcgatatccggatcatggtcta 29115134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 24423750 - 24423825
Alignment:
Q  67 tatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgc 141  Q
    |||||||||| |||||||||| | | ||||| ||| ||||||||||||||||||||||| || |||||||||||||    
T  24423750 tatgccaaatggggtgattaatattgttatgccaaatggggcgatatccggatcatggtatagttgcatttcatgc 24423825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 24499481 - 24499434
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatca 145  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||||    
T  24499481 caattggggcgatatccggatcatggtcaagttgcatctcatgcatca 24499434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 10335655 - 10335430
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||| | ||||    
T  10335655 atggggcgattattattatatgccaaatggggcaattctttattatatgccaaatggggtgattaaaactattatgaaagttggggcgatatctgaatca 10335556  T
Q  122 tggtctattg-catttcat------gcatcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaacta 214  Q
    |||||| ||  ||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10335555 tggtctgtttacatttcatacatttgcatcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagtgatgaatattttaaacta 10335456  T
Q  215 aaaataaattattttagcacaattcc 240  Q
    |||| |||||||||||||||||||||    
T  10335455 aaaagaaattattttagcacaattcc 10335430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 18286321 - 18286115
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  18286321 atggggcgattattattatatgccaaatggggcgattctttattatatgccaaaaggggcgattaaaactattatgtcaattggggcgatatccggatca 18286222  T
Q  122 tggtcta-ttgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaa 217  Q
    || |||| |||||||| ||||||   ||||||||||||||||   ||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||    
T  18286221 tgctctatttgcattttatgcatttgcatcaacattgagtctcgagtcttgtgtttgttcttgtagtatattttagagtgatgaatattttaaattaaaa 18286122  T
Q  218 ataaatt 224  Q
    | |||||    
T  18286121 agaaatt 18286115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 41951659 - 41951472
Alignment:
Q  61 ttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtctatt-gcatttcatgcat------catcaacatt 153  Q
    |||||||||||||||| ||| |||||||||||||||| |||||| | ||||||||| |||||||||| || |||||||||||||      ||||||||||    
T  41951659 ttattatatgccaaatggggcgattaaaactattatgccaattgagacgatatccgaatcatggtctgtttgcatttcatgcatttgcatcatcaacatt 41951560  T
Q  154 gagtctttggtcttgtgtttgttcttata-gcatattttagagggatgaatattttaaactaaaaataaattattttagcacaattcc 240  Q
    ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  41951559 gagtctttggtcttgtgtttgttcttataagcatattttagagtgacgaatattttaaactaaaaagaaattattttagcacaattcc 41951472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 41942671 - 41942478
Alignment:
Q  26 ggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggt 125  Q
    |||||||||||| || |||||||||||  |||| || |||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  41942671 ggcgattattattatgtgccaaatgggacgattatt-attatatgccaaatggggcgattaaaactattatgccaattgaggcgatatccggatcatggt 41942573  T
Q  126 ct-attgcatttca------tgcatcatcaacattgagtctttggtcttgtgtttgttcttat-agcatattttagagggatgaatattttaaac 212  Q
    ||  ||||||||||      ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||  ||||||||||||    
T  41942572 ctgtttgcatttcatgcatttgcatcatcaacattgagtgtttggtcttctgtttgttcttataagcatattttagagtgacaaatattttaaac 41942478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 31518649 - 31518547
Alignment:
Q  45 caaatggggtgattctttattatatgccaaatagggtgattaaaa--ctattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgc 141  Q
    ||||||||| ||||| ||||| |||||||| | ||| ||||||||  | |||||| ||| | |||||||||||||||||||||||| |||||||||||||    
T  31518649 caaatggggcgattcattattgtatgccaactggggcgattaaaaaacaattatgccaactagggcgatatccggatcatggtctacttgcatttcatgc 31518550  T
Q  142 atc 144  Q
    |||    
T  31518549 atc 31518547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 2569 - 2777
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2569 atggggcgattattattatatgccaaatggggcgattctttattatacgccaaatggggtgattaaaactattatgtcaattggggcgatatccggatca 2668  T
Q  122 tggtcta-ttgcatttca------tgcatcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaacta 214  Q
    ||||||| ||||||||||      ||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||| |||||    
T  2669 tggtctatttgcatttcatgcatttgcatcatcaacattgagtctttggtcttgtgtttgttcttatggtatattttaaagtgatgaatattttgaacta 2768  T
Q  215 aaaataaat 223  Q
    |||| ||||    
T  2769 aaaagaaat 2777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 29454257 - 29454430
Alignment:
Q  73 aaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtctattgcatttcatgca------tcatcaacattgagtctttggtct 166  Q
    |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||      ||||||||||||||||||||||||    
T  29454257 aaatggggtggttaaaactattatgtcaattggggcgatatgcggatcatggtctattgcatttcatgcatttgcatcatcaacattgagtctttggtct 29454356  T
Q  167 tgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaataaattattttagcacaattcc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29454357 tgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaataatttattttagcacaattcc 29454430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 40888213 - 40887990
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| || || ||||||||| |||| || |||||||| |||||  || |||||||||||||||| |||||||||||||||||||||||    
T  40888213 atggggcgattattattatgtgtcaaatggggcgattatt-attatatgtcaaatgaggcgattaaaactattatgccaattggggcgatatccggatca 40888115  T
Q  122 tggtct-attgcatttcatgcat---cat---caacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaacta 214  Q
    ||||||  |||||||||||||||   |||   ||||||||||| || ||||||||||||||||||||||||| ||||| || ||| ||||||||||||||    
T  40888114 tggtctgtttgcatttcatgcatctgcatctccaacattgagt-ttgggtcttgtgtttgttcttatagcatgttttatagtgatcaatattttaaacta 40888016  T
Q  215 aaaataaattattttagcacaattcc 240  Q
    |||| |||||||||||||||||||||    
T  40888015 aaaagaaattattttagcacaattcc 40887990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 8655603 - 8655810
Alignment:
Q  29 gattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta 128  Q
    ||||||||| ||||||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||||| | | ||||| ||||| ||||||||    
T  8655603 gattattattatatgccaaatggggtgattcattattatatgtcaaatggggcgattaaaactattatgtcaatt-gagtgatattcggataatggtcta 8655701  T
Q  129 -ttgcatttcatgcatcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaataaattatt 227  Q
     ||||||||||||   |||||||||||||| || | |||||||||||||||||||  ||||||||||| ||| ||||||||||| |||||| ||| | ||    
T  8655702 cttgcatttcatg---catcaacattgagttttcgatcttgtgtttgttcttatattatattttagagtgataaatattttaaattaaaaagaaa-tgtt 8655797  T
Q  228 ttagcacaattcc 240  Q
    |||||| ||||||    
T  8655798 ttagcataattcc 8655810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 52640913 - 52640701
Alignment:
Q  31 ttattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta-t 129  Q
    ||||||| ||||||||||||||| ||||| |||||||||| ||| | ||| |||||||| ||||||| ||| |||||||||||| | |||||||| || |    
T  52640913 ttattattatatgccaaatggggcgattcattattatatgtcaattggggcgattaaaaatattatgccaactggggcgatatctgaatcatggtatatt 52640814  T
Q  130 tgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaataaattat 226  Q
    ||||||||||||||   ||||||||||||||| |  ||||||||||||||||  | | ||||||||||| ||||||||||||||| || ||| ||| | |    
T  52640813 tgcatttcatgcatttgcatcaacattgagtcctgagtcttgtgtttgttctagttgtatattttagagtgatgaatattttaaattagaaagaaa-tgt 52640715  T
Q  227 tttagcacaattcc 240  Q
    ||||||||||||||    
T  52640714 tttagcacaattcc 52640701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 15989987 - 15989769
Alignment:
Q  25 gggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgatt--aaaactattatgtcaattggggcgatatccggatcat 122  Q
    |||| |||||||| ||||||||||||||| ||||| |||||||||||||| | ||| ||||  |||||||||||| ||| ||||||||||||||||||||    
T  15989987 gggcaattattattatatgccaaatggggcgattcattattatatgccaactggggcgattaaaaaactattatgccaactggggcgatatccggatcat 15989888  T
Q  123 ggtct------attgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaact 213  Q
    |||||      |||||||| |||||||   ||||||||||||       ||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  15989887 ggtctacttgcattgcattccatgcatctgcatcaacattga-------gtcttgtgtttgttcttgtagtatattttagagtgatgaatattttaaact 15989795  T
Q  214 aaaaataaattattttagcacaattcc 240  Q
    | ||| ||| | |||||||||||||||    
T  15989794 ataaagaaa-tgttttagcacaattcc 15989769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 19544187 - 19544034
Alignment:
Q  67 tatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcat---catcaacattgagtctttg 162  Q
    |||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||   ||| |||||||||| || |    
T  19544187 tatgtcaaatggggcgattaaaactattatgccaattggggcgatatccggatcat-gtctactttcatttcatgcatctgcattaacattgagtattgg 19544089  T
Q  163 gtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaa 218  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||| ||||||||||    
T  19544088 gtcttgtgtttgttcttataatata-tttagagtgatgaatatttaaaactaaaaa 19544034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 3415610 - 3415560
Alignment:
Q  97 gtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  3415610 gtcaattggagcgatatccggatcatagtctagttgcatttcatgcatcat 3415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 10051163 - 10051211
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||    
T  10051163 caattggggcgatatccggatcatggtcaagttgcatctcatgcatcat 10051211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 11650017 - 11649941
Alignment:
Q  69 tgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatc 144  Q
    |||||||| ||| |||||| | | ||||| ||||||||| |||||| ||||||||||||| || |||||||||||||    
T  11650017 tgccaaatggggcgattaatatttttatgccaattggggtgatatctggatcatggtctagttacatttcatgcatc 11649941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 13379664 - 13379443
Alignment:
Q  26 ggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggt 125  Q
    |||||||||||| ||||| ||||||||  |||||||||||||||| ||||| ||  |||||||||||||||| |||||||||||||||||||||||||||    
T  13379664 ggcgattattattatatgacaaatgggacgattctttattatatgtcaaatgggacgattaaaactattatgccaattggggcgatatccggatcatggt 13379565  T
Q  126 cta-ttgcatttca------tgcatcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaa 218  Q
    ||| ||||||||||      ||||||||||||||||||| || ||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  13379564 ctatttgcatttcatgcatctgcatcatcaacattgagttttgggtcttgtgtttgttcttatagcatgttttatagtgatgaatattttaaactaaaaa 13379465  T
Q  219 taaattattttagcacaattcc 240  Q
     |||| ||||||||||||||||    
T  13379464 gaaatgattttagcacaattcc 13379443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 51443055 - 51442934
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||| |||||  |||||||||||||| |||||||||||||||||||| | ||| |||| ||||||||||| |||||||| ||||||||| ||||    
T  51443055 atggggcgatcattat--tatgccaaatggggcgattctttattatatgccaattggggcgatttaaactattatgccaattgggacgatatccgaatca 51442958  T
Q  122 tggtcta-ttgcatttcatgcatc 144  Q
    || |||| ||||||||||||||||    
T  51442957 tgatctatttgcatttcatgcatc 51442934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 24302597 - 24302451
Alignment:
Q  61 ttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtctattgcatttcatgcatcatcaacattgagtctt 160  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||  |||||||||||||        ||   ||| |||||||||||||    
T  24302597 ttattatatgtcaaatggggtgattaaaactattatgccaattgggacgatatccaaatcatggtctatt--------tg---cattaacattgagtctt 24302509  T
Q  161 tggtcttgtg-tttgttcttatagcatattttagagggatgaatattttaaactaaaa 217  Q
     ||||||||| ||| ||||||||| ||||||||||| |||||| ||||||||||||||    
T  24302508 gggtcttgtgttttcttcttatagtatattttagagtgatgaacattttaaactaaaa 24302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 20601016 - 20600965
Alignment:
Q  96 tgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    ||||||||||||||||||| ||||||||||| | |||||| |||||||||||    
T  20601016 tgtcaattggggcgatatctggatcatggtcaagttgcatctcatgcatcat 20600965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 2269158 - 2269105
Alignment:
Q  94 tatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||| ||||||||||| ||||| |||||||||||| |||||| |||||||||||    
T  2269158 tatgccaattggggcgctatcctgatcatggtctagttgcatctcatgcatcat 2269105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 51443197 - 51443160
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattc 59  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  51443197 atggggcgattattattatatgccaaatggggcgattc 51443160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 8312293 - 8312505
Alignment:
Q  30 attattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtctat 129  Q
    |||||||| ||||| ||||||||  ||||||||||||||||||||||  ||||||||||||| ||||| ||||||||| |||||||| ||||||||||||    
T  8312293 attattattatatgtcaaatgggacgattctttattatatgccaaatgtggtgattaaaactcttatgccaattggggagatatccgaatcatggtctat 8312392  T
Q  130 tg-catttcatgca------tcatcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaaataaa 222  Q
    |  ||||| |||||      |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  8312393 ttacatttaatgcatctgcatcatcaacattgagtcttgggtcttgtgtttgttcttatagcatattttagagtgatgaatattttaaactaaaaagaaa 8312492  T
Q  223 ttattttagcaca 235  Q
    | |||||||||||    
T  8312493 tgattttagcaca 8312505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 9745755 - 9745945
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||    
T  9745755 atgggacgattattatcatatgctaaatggggcgattctttagtatatgccaaatggggcgattaaaactattatgtcaattgaggcgatatccagatca 9745854  T
Q  122 tggtcta-ttgcatttcatgcat---------catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaa 202  Q
    ||||||| |||||||||||||||         ||||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||||    
T  9745855 tggtctatttgcatttcatgcatctgcatctacatcaacattgagtcttgggtcttgtgtttgttcttataatatattttagagtgatgaa 9745945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 13170026 - 13170178
Alignment:
Q  94 tatgtcaattggggcgatatccggatcatggtctatt-gcatttcatgca------tcatcaacattgagtctttggtcttgtgtttgttcttatagcat 186  Q
    |||| ||| |||||||||||||||||||  ||||||| ||||||||||||      ||||||||||||||| ||  ||||||||||||||||| ||| ||    
T  13170026 tatgccaaatggggcgatatccggatcacagtctattagcatttcatgcatctgcatcatcaacattgagtattgagtcttgtgtttgttcttgtagtat 13170125  T
Q  187 attttagagggatgaatattttaaactaaaaataaattattttagcacaattcc 240  Q
    ||||||||| ||||||| ||||||| |||||| ||| | |||||||||||||||    
T  13170126 attttagagtgatgaattttttaaattaaaaagaaa-tgttttagcacaattcc 13170178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 13169981 - 13170035
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaat 76  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  13169981 atggggcgattattattatatgccaaatggggcgattctttattatatgccaaat 13170035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 46002291 - 46002220
Alignment:
Q  74 aatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatc 144  Q
    ||||||| |||||||| ||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||    
T  46002291 aatagggcgattaaaagtattatgccaattggggcgatatctagatcatggtctagttgcatttcatgcatc 46002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 65497 - 65545
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||    
T  65497 caattggggcgatatccggatcatggtcaagttgcatctcatgcatcat 65545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 13169923 - 13169960
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattc 59  Q
    ||||||||||||| || |||||||||||||||||||||    
T  13169923 atggggcgattatgattatatgccaaatggggtgattc 13169960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 22404362 - 22404583
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| ||||| ||||||| | |||||||||||||||||||||  ||  |||||||||||||||| |||||||||||||||||||||||    
T  22404362 atggggcgattattattatatgtcaaatggagcgattctttattatatgccaaaagggacgattaaaactattatgccaattggggcgatatccggatca 22404461  T
Q  122 tggtcta-ttgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaa 217  Q
    || |||| |||||||||||||||   |||||||||||||||||  ||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||    
T  22404462 tgctctatttgcatttcatgcatttgcatcaacattgagtcttgagtcttgtgtttgttcttgtagtatattttagagtgatgaatattttaaattaaaa 22404561  T
Q  218 ataaattattttagcacaattcc 240  Q
    | ||| | |||||||||| ||||    
T  22404562 agaaa-tgttttagcacagttcc 22404583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 16329468 - 16329673
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||    
T  16329468 atggcgcgattattatcatatgccaaatggggcgattctttaatatatgccaaatggggtgattaaaactattatgctagttggggcgatatccggatca 16329567  T
Q  122 tggtcta-ttgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaa 217  Q
    ||||||| |||||||||||||||   |||||||||||||||||  || |||||||||||||| ||| |||||||||||  ||||||| |||||| |||||    
T  16329568 tggtctatttgcatttcatgcatctgcatcaacattgagtcttgagtattgtgtttgttcttttagtatattttagagtaatgaatagtttaaattaaaa 16329667  T
Q  218 ataaat 223  Q
    | ||||    
T  16329668 agaaat 16329673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 27976737 - 27976510
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| ||| |  ||||||||||||||||||||||| |  |||| ||  |||||||||||||||| |||||||||||||||| ||||||    
T  27976737 atggggcgattattatgataagttaaatggggtgattctttattataagttaaatgggtcgattaaaactattatgccaattggggcgatatctggatca 27976638  T
Q  122 tggtctatt-gcatttcatgcat---------catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaa 211  Q
    || |||||| |||||||||||||         |||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||    
T  27976637 tgatctatttgcatttcatgcatttgcatcatcatcaacattgagtatttagtattgtgtttgttcttatagcatattttagagtgatgaatattttaaa 27976538  T
Q  212 ctaaaaataaattattttagcacaattcc 240  Q
    || |||| |||||||||||||||||||||    
T  27976537 ct-aaaagaaattattttagcacaattcc 27976510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 28063265 - 28063038
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| ||| |  ||||||||||||||||||||||| |  |||| ||  |||||||||||||||| |||||||||||||||| ||||||    
T  28063265 atggggcgattattatgataagttaaatggggtgattctttattataagttaaatgggtcgattaaaactattatgccaattggggcgatatctggatca 28063166  T
Q  122 tggtctatt-gcatttcatgcat---------catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaa 211  Q
    || |||||| |||||||||||||         |||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||    
T  28063165 tgatctatttgcatttcatgcatttgcatcatcatcaacattgagtatttagtattgtgtttgttcttatagcatattttagagtgatgaatattttaaa 28063066  T
Q  212 ctaaaaataaattattttagcacaattcc 240  Q
    || |||| |||||||||||||||||||||    
T  28063065 ct-aaaagaaattattttagcacaattcc 28063038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 29046074 - 29045855
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    ||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||    
T  29046074 atgggtcgattattattatatgtcaaatggggcgattctttattatatgccaaatggggcgattaaaactattatgccaattggggcgatatccggatca 29045975  T
Q  122 tggtcta-ttgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaa 217  Q
    || |||| ||||| |||||||||   |||||||||||| ||||  ||||||||||||||||||| | |||||||| || ||| |||||||| || |||||    
T  29045974 tgatctatttgca-ttcatgcatctgcatcaacattgaatcttgagtcttgtgtttgttcttatggtatattttaaagtgattaatattttgaattaaaa 29045876  T
Q  218 ataaattattttagcacaattc 239  Q
    | ||| | ||||||||||||||    
T  29045875 agaaa-tgttttagcacaattc 29045855  T

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Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 16130653 - 16130477
Alignment:
Q  42 tgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatg 140  Q
    |||||||||||| |||| || || |||||| |||| ||| |||||||||||||||| || |||| |||||||| ||||||||||||| ||||||||||||    
T  16130653 tgccaaatggggcgattatt-atcatatgcgaaatggggcgattaaaactattatgccagttggagcgatatctggatcatggtctatttgcatttcatg 16130555  T
Q  141 cat---catcaacattgagtctttggtcttgtgtttgttctta----tagcatattttagagggatgaatattttaaa 211  Q
    |||   |||||||||||||||||  || |||||||||||||||    ||| |||||||||||  ||||||||||||||    
T  16130554 catctgcatcaacattgagtcttaagtattgtgtttgttcttaattttagtatattttagagtaatgaatattttaaa 16130477  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 19704422 - 19704371
Alignment:
Q  96 tgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||| |||||||||||||||||| | |||||| |||||||||||    
T  19704422 tgtcaattggggtgatatccggatcatggtcaagttgcatctcatgcatcat 19704371  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 19714012 - 19713965
Alignment:
Q  100 aattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||    
T  19714012 aattggggcgatatccggatcatggtcaagttgcatctcatgcatcat 19713965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 22404304 - 22404341
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattc 59  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  22404304 atggggcgattattattatatgccaaatgtggtgattc 22404341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 16130647 - 16130611
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgatt 58  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  16130647 atggggcgattattatcatatgcgaaatggggcgatt 16130611  T

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Target: scaffold0016 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 108435 - 108655
Alignment:
Q  22 atggggcgattattatcatatgccaaatggggtgattctttattatatgccaaatagggtgattaaaactattatgtcaattggggcgatatccggatca 121  Q
    |||||||||||||||| |||||| ||| |||| |||||||||||||||||||||| ||| |||||||||||||||| ||||||||  |||||||||||||    
T  108435 atggggcgattattattatatgctaaaaggggcgattctttattatatgccaaatggggcgattaaaactattatgccaattgggatgatatccggatca 108534  T
Q  122 tggtct-attgcatttcatgcat---catcaacattgagtctttggtcttgtgtttgttcttatagcatattttagagggatgaatattttaaactaaaa 217  Q
    ||||||  |||||||||||||||   ||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||  ||||||| ||||||||    
T  108535 tggtctgtttgcatttcatgcatttgcatcaacattgagtc-ttggtcttgtgtttgttattatagtatattttagagtgatatatattttgaactaaaa 108633  T
Q  218 ataaattattttagcacaattcc 240  Q
    | ||| | |||||||||||||||    
T  108634 agaaa-tgttttagcacaattcc 108655  T

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Target: scaffold0150 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 35368 - 35224
Alignment:
Q  82 gattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatcatca--acattgagtctttggtcttgtgtttgttct 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||  ||  |||||||||  || || ||||||||||||     
T  35368 gattaaaactattatgtcaattggggcgatatccggatcatggtctacttgcatctcatgcatctacatcacattgagttattagttttgtgtttgttcg 35269  T
Q  179 tatagcatattttagagggatgaatattttaaactaaaaataaat 223  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||||    
T  35268 tatagtatattttagagtgatgaatattttaaattaaaaacaaat 35224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 148000 - 147856
Alignment:
Q  82 gattaaaactattatgtcaattggggcgatatccggatcatggtcta-ttgcatttcatgcatcatca--acattgagtctttggtcttgtgtttgttct 178  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||  ||  |||||||||  || || ||||||||||||     
T  148000 gattaaaactattatgccaattggggcgatatccggatcatggtctacttgcatctcatgcatctacatcacattgagttattagttttgtgtttgttcg 147901  T
Q  179 tatagcatattttagagggatgaatattttaaactaaaaataaat 223  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||||    
T  147900 tatagtatattttagagtgatgaatattttaaattaaaaacaaat 147856  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 31094967 - 31095016
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcatc 147  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  31094967 caattggggcgatatccggatcatggtctaggtgcatctcatgcatcatc 31095016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 22625556 - 22625604
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||    
T  22625556 caattggggcgatatccggatcatggtcaagttgcatctcatgcatcat 22625604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 29955077 - 29955029
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||    
T  29955077 caattggggcgatatccggatcatggtcaagttgcatctcatgcatcat 29955029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 12492291 - 12492338
Alignment:
Q  100 aattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||| |||||||||||| |||||| |||||||||||    
T  12492291 aattggggcgatatccagatcatggtctagttgcatctcatgcatcat 12492338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 1376 - 1424
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||||| ||||||||| | |||||| |||||||||||    
T  1376 caattggggcgatatccgaatcatggtcaagttgcatctcatgcatcat 1424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 4844 - 4892
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||| ||||||||||||||||||||| | |||||| |||||||||||    
T  4844 caattgaggcgatatccggatcatggtcaagttgcatctcatgcatcat 4892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 76085 - 76037
Alignment:
Q  99 caattggggcgatatccggatcatggtcta-ttgcatttcatgcatcat 146  Q
    |||||||||||||||||||||||||||| | |||||| |||| ||||||    
T  76085 caattggggcgatatccggatcatggtcaagttgcatctcatccatcat 76037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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