View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7729_low_5 (Length: 448)
Name: NF7729_low_5
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7729_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Original strand, 20531259 - 20531679
Alignment:
| Q |
14 |
atatctggtgctgtatatattgttggttttggaactggtgannnnnnnctgaattatttcataaatccattgcttcacaatgttcatacgccttatcaat |
113 |
Q |
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| T |
20531259 |
atatctggtgctgtatatattgttggttttgggactggtgatttttttctgaattatttcataaatccattgcttcacaatgttcatacgccttatcaat |
20531358 |
T |
|
| Q |
114 |
tctcggacattcttgtgcaaaactatgctaaatttattcaggtatatatttcactctcaacaaaagttttaaacagtagccctgaaaacagctgcaatca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
20531359 |
tctcggacattcttgtgcaaaactatgctaaatttattcaggtatatatttcactctcaacaaaagttttaaatagtagccctgaaaacaggtgcaatca |
20531458 |
T |
|
| Q |
214 |
catcgcgatactcaatattgcagaaaatcgtgatcaaatgcaacttaaataacttcaatgatgatcgcattatagtttcaataacattaaaaaccgttac |
313 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
20531459 |
catcgcgatactcaatattgcagaaaatcgtggtcaaatgcaacttaaataacttcaatcatgatcgcattatggtttcaataacattaaaaaccgttac |
20531558 |
T |
|
| Q |
314 |
gttgcaactcaattcatggttgcgatgatttatttaaaaccttgagatctcaaccatgccatgaaataatgccctagaagattagcaaggggcttaaaag |
413 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20531559 |
gtcgcaactcaattcatggttgcgaagatttatttaaaaccttgcgatctcaaccatgccatgaaataatgccctagaagattagcaaggggcttaaaag |
20531658 |
T |
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| Q |
414 |
tagatcttttacattgtttgt |
434 |
Q |
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| T |
20531659 |
tagatcttttacattgtttgt |
20531679 |
T |
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