View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7729_low_8 (Length: 394)
Name: NF7729_low_8
Description: NF7729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7729_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 346
Target Start/End: Original strand, 9440599 - 9440940
Alignment:
| Q |
8 |
ttggtgttataatcgtcacttcatggtgtttctcagcaaattttaaagtgagaaaagcaattttctacgaattttagttaaggattacacaatatgtata |
107 |
Q |
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| T |
9440599 |
ttggggttataatcgtcacttcatggtgtttctcagcaaattttgaagtgagaaaagcaattttctacgaattttagttaaggattacacaatatgtata |
9440698 |
T |
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| Q |
108 |
aagtctacnnnnnnntaaatattgcaaccgaaacataaatattccatccctaaatacaat---catgtttatcctgctactatggctttggaagaaaatt |
204 |
Q |
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| T |
9440699 |
aagtctacaaaaaaataaatattgcaaccgaaacataaatattccatccctaaatacaataatcatgtttatcctgctactatggctttggaagaaactt |
9440798 |
T |
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| Q |
205 |
cttgtgatggtttaatcatcaatttgagacaagtgtgatcactgagaaatcaataaaaatatttattttttactgtcttgaggttatactagaatagtaa |
304 |
Q |
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| T |
9440799 |
cttgtgatggtttaatcatcaatttgagacaagtgtgatcactgagaaatcaataaaaatatttattttttactgtcttgaggttatactagaatagtaa |
9440898 |
T |
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| Q |
305 |
attttcaatcgtgtagcattttttactagggttcgttactat |
346 |
Q |
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| T |
9440899 |
attttcaatcgtgtagcattttttactagggttcgttactat |
9440940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 346
Target Start/End: Complemental strand, 9398824 - 9398749
Alignment:
| Q |
271 |
tttttactgtcttgaggttatactagaatagtaaattttcaatcgtgtagcattttttactagggttcgttactat |
346 |
Q |
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| T |
9398824 |
tttttactgtcttgaagttatccttgaatagtaaattttcaatcgtgtagcatgtttcactagggttcgttactat |
9398749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 9417586 - 9417514
Alignment:
| Q |
272 |
ttttactgtcttgaggttatactagaatagtaaattttcaatcgtgtagcattttttactagggttcgttact |
344 |
Q |
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| T |
9417586 |
ttttactgtctctaagttatccttgaatagtaaattttcaatcgtgtagcatatttcactagggttcgttact |
9417514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 9408397 - 9408323
Alignment:
| Q |
270 |
ttttttactgtcttgaggttatactagaatagtaaattttcaatcgtgtagcattttttactagggttcgttact |
344 |
Q |
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| T |
9408397 |
ttttttactgtcttgaagttatccttaaatagtaaattttcaatcgtctagcatgttctactagggtttgttact |
9408323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 9399066 - 9398960
Alignment:
| Q |
153 |
atccctaaatacaatcatgtttatcctgctactatggctttggaagaaaattcttgtgatggtttaatcatcaatttgagacaagtgtgatcactgagaa |
252 |
Q |
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| T |
9399066 |
atccctgaatacaagcatgtttatactgctactatgcctttggaagaagcttctcttgattgattgatcagccatttgagacaagagtaattaatgataa |
9398967 |
T |
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| Q |
253 |
atcaata |
259 |
Q |
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| T |
9398966 |
atcaata |
9398960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 9417636 - 9417589
Alignment:
| Q |
153 |
atccctaaatacaatcatgtttatcctgctactatggctttggaagaa |
200 |
Q |
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| T |
9417636 |
atccctgaatacaagcatgtttatcctgctactatgccattggaagaa |
9417589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 9430199 - 9430159
Alignment:
| Q |
219 |
atcatcaatttgagacaagtgtgatcactgagaaatcaata |
259 |
Q |
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| T |
9430199 |
atcaacaatttgagacaagagtgatcaatgagaaatcaata |
9430159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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