View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_high_2 (Length: 675)
Name: NF7730_high_2
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 41333440 - 41333800
Alignment:
| Q |
19 |
ctcgtttcccttactgaatgattcacgacgataacaagcaaggacactacataccttctagtcaagaatgtgttacattaattttattttgtgtaacata |
118 |
Q |
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| T |
41333440 |
ctcgtttcccttactgaatgattcacgacgataacaagcaaggacactacataccttctagtcaagaatgtgttacattaattttattttgtgtaacata |
41333539 |
T |
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| Q |
119 |
aatccctgtttgtattaaattcaatgtctatataaataactaattcaattttattttgggctatattaattggaagacacgaccaaagggcaaaggtgga |
218 |
Q |
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| T |
41333540 |
aatccctgtttgtattaaattcaatgtctatataaataactaattcaattttattttgggctatattaattggaagacacgaccaaagggcaaaggtgga |
41333639 |
T |
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| Q |
219 |
gtactgcccaacccatcaacatatatttgattatttatttgatacaatatttcatgaaattgttttttcttatccaatgttgaagaggtagggagcatgg |
318 |
Q |
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| T |
41333640 |
gtactgcccaacccatcaacatatatttgattatttatttgatacaatatttcatgaaattgttttttcttatccaatgttgaagaggtagggagcatgg |
41333739 |
T |
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| Q |
319 |
cgacatcaactttgtgtgtgtctttggtttggttttaaaatataataatcaatagttagta |
379 |
Q |
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| T |
41333740 |
cgacatcaactttgtgtgtgtctttggtttggttttaaaatataataatcaatagttagta |
41333800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 481 - 663
Target Start/End: Original strand, 41334188 - 41334370
Alignment:
| Q |
481 |
tttggttcaaagaaatccaagtgttctgtttcaaacataacaagaataaaaagacataatctgacatcttgattgaatcaccttgcttgaattagtagta |
580 |
Q |
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| T |
41334188 |
tttggttcaaagaaatccaagtgttctgtttcaaacataacaagaataaaaagacataatctgacatcttgattgaatcaccttgcttgaattagtagta |
41334287 |
T |
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| Q |
581 |
gtgttttctggtgtaaatggctagacttaggacttggattgattcaaatacatcataaaataattcaacgcccataaaagtat |
663 |
Q |
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| T |
41334288 |
gtgttttctggtgtaaatggctagacttaggacttggattgattcaaatacatcataaaataattcaacgcccataaaagtat |
41334370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 375 - 449
Target Start/End: Original strand, 41334086 - 41334156
Alignment:
| Q |
375 |
tagtattacttatagagattggagatagagaagtcttgttataagtattacgtacataaatacttgcatcataac |
449 |
Q |
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| T |
41334086 |
tagtattaccgatagagattggagatagagaagtcttgttataagtat----tacataaatacttgcatcataac |
41334156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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