View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_high_9 (Length: 248)
Name: NF7730_high_9
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43875312 - 43875448
Alignment:
| Q |
1 |
ccaatggagattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttc |
100 |
Q |
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| T |
43875312 |
ccaatggagattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttc |
43875411 |
T |
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| Q |
101 |
atgttcctgctcctgttcctagtgctaggtaccttca |
137 |
Q |
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| T |
43875412 |
atgttcctgctcctgttcctagtgctaggtaccttca |
43875448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 43875476 - 43875550
Alignment:
| Q |
165 |
ataacatgttattgatgcgaaatatccatcacccactctgagtaggccaccgactactaatcatgttttttcatc |
239 |
Q |
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| T |
43875476 |
ataacatgttattgatgcgaaatatccatcacccactctgagtgggctaccgactactaatcatgttttttcatc |
43875550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 39992627 - 39992499
Alignment:
| Q |
3 |
aatggagattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttcat |
102 |
Q |
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| T |
39992627 |
aatggagatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggctttcttggtcttcctgttgagtttgaagttgag |
39992528 |
T |
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| Q |
103 |
gttcctgctcctgttcctagtgctaggta |
131 |
Q |
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| T |
39992527 |
atccctggtcgtgttcctagtgctaggta |
39992499 |
T |
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