View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_1 (Length: 1001)
Name: NF7730_low_1
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 878; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 878; E-Value: 0
Query Start/End: Original strand, 49 - 986
Target Start/End: Complemental strand, 39850309 - 39849379
Alignment:
| Q |
49 |
ttcaggttcttgtaaattatttcattgacttctggctatatccgtgaattactggccctgtgtaatcatgcgtatgaaatcctgatttggatttgattgc |
148 |
Q |
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| T |
39850309 |
ttcaggttcttgtaaattatttcattgacttctggctatatccgtgaattactggccctgtgtaatcatgcatatgaaatcctgatttggatttgattgc |
39850210 |
T |
|
| Q |
149 |
tgttatgatgatttgtttgaacacatatatttagagaattttatacatctttaatgagttgatcaaattctgtttagcgatatttgagagagtagatcag |
248 |
Q |
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| T |
39850209 |
tgttatgatgatttgtttgaacacatatatttagagaattttatacatctgtaatgagttgatcaaattctgtttagcgatatttgagagagtagatcag |
39850110 |
T |
|
| Q |
249 |
tttccactatgtaggacttcccgcacttcgctcttgtttgttcacatgtgactcaaccaacctttgaatgtgatgcattacttcaccagcatgccttatt |
348 |
Q |
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| T |
39850109 |
tttccactatgtaggacttcctgcacttcgctcttgtttgttcacatgtgactcaaccaacctttgaatgtgatgcattacttcaccagcatgccttatt |
39850010 |
T |
|
| Q |
349 |
tctgtctgcaattaa-ccctgaaatgcgatgcacttaattgcgtatgtgcagaattgcagtcagtcctggtcgatttcctaaaaccagtaaatatttcat |
447 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39850009 |
tctgtctgcaattaaaccctgaaatgcgatgcacttaattgcgtatgtgcagaattgcagtcagtcctggtcgatttcctaaaaccagtaaatatttcat |
39849910 |
T |
|
| Q |
448 |
ttgttcgctccacactttcgatgaccccccagttgctcatccagaagtacataatggtccagcagaagtgcaagctattgatgaccattctggatctgca |
547 |
Q |
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| T |
39849909 |
ttgttccctccacactttcgatgaccccccagttgctcatccagaagtacataatggtccagcagaagtgcaagctattgatgaccattctggatctgca |
39849810 |
T |
|
| Q |
548 |
atgtttgcacatttgggtaattttaatggaaggtaaaagccaactttggttcaacaaatggaaccatctcctggactgctatttttagatttccacggcc |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39849809 |
atgtttgcacatttgggtaattttaatggaaggtaaaagccaactttggttcaacaaatggaaccatctcctggactgctatttttagatttccacggcc |
39849710 |
T |
|
| Q |
648 |
aagtgcatatttttcaacacacctcattccttatcagatcaccgtcactatccattaagtgcatccatatttcttttcttcctttctgttgtttatgcat |
747 |
Q |
| |
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| T |
39849709 |
aagtgcatatttttcaacacacctcattcc--------tcaccgtcactatccattaagtgcatccatatttcttttcttcctttctgttgtttatgcat |
39849618 |
T |
|
| Q |
748 |
gtcttaagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagatgaatgtgcatcaca |
847 |
Q |
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| T |
39849617 |
gtcttaagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagatgaatgtgcatcaca |
39849518 |
T |
|
| Q |
848 |
atcagattcagcaggagtagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaact |
947 |
Q |
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| T |
39849517 |
atcagattcagcaggagtagagaggaaagtaaatattcaatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagactagtaact |
39849418 |
T |
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| Q |
948 |
caatcacatatgatacatataacatgtatgtattgatgt |
986 |
Q |
| |
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| T |
39849417 |
caatcacatatgatacatataacatgtaagtattgatgt |
39849379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 752 - 939
Target Start/End: Original strand, 33973168 - 33973356
Alignment:
| Q |
752 |
taagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaaca--aagatgaatgtgcatcacaat |
849 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||| ||| | |||||| |||| ||||||| |||||| | || ||||||||| ||||| |
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| T |
33973168 |
taagaatcttgaatgaatgtgaagaagctgatccaaatgccatagca-tgctcagtttatccatcattcctacaggtggagaataaatgtgcattacaat |
33973266 |
T |
|
| Q |
850 |
cagattcagcaggagtagagaggaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaagac |
939 |
Q |
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|| || |||||||||||||||||||||||| | |||| |||| |||||||||||| ||||||||| | ||| | |||||| |||||| |
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| T |
33973267 |
tagggacatcaggagtagagaggaaagtaaatacttgatgtattgaatttgatgaacacataaaccaatcgtaagtagtctactgaagac |
33973356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 43166212 - 43166113
Alignment:
| Q |
96 |
attactggccctgtgtaatcatgcgtatgaaatcctgatttggatttgattgctgttatgatgatttgtttgaacacatatatttagagaattttataca |
195 |
Q |
| |
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| T |
43166212 |
attactggccctgtgtatttatgtgtgtgaaattctgatgtg-attttattgctgctatgatgatttggttaaccacatagttttagaggattctataca |
43166114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 753 - 833
Target Start/End: Complemental strand, 32202033 - 32201953
Alignment:
| Q |
753 |
aagaatcttgaaggaatgtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcatacctacaacaaagat |
833 |
Q |
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| T |
32202033 |
aagaatcttgaatgaatgtgaagaagctaatccaaataccatagcgatgcttattttagccatcattcctacaacaaagat |
32201953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 490 - 581
Target Start/End: Complemental strand, 13973195 - 13973104
Alignment:
| Q |
490 |
agaagtacataatggtccagcagaagtgcaagctattgatgaccattctggatctgcaatgtttgcacatttgggtaattttaatggaaggt |
581 |
Q |
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| T |
13973195 |
agaagtaaataatagtcctgctgaagttcaagctattgatggccattctggaactgcaatgtttgcacagtttagtaatcttaatggaaggt |
13973104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 872 - 938
Target Start/End: Complemental strand, 3981494 - 3981428
Alignment:
| Q |
872 |
gaaagtaaatattcgatgcattgcatttgatgaacaaataaaccaaccataaatggtctaccgaaga |
938 |
Q |
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| T |
3981494 |
gaaagtaaatattagatgcattgcatatggttaacaaataaaccaaccataagtagtctactgaaga |
3981428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 818
Target Start/End: Complemental strand, 3981606 - 3981521
Alignment:
| Q |
734 |
tgttgtttatgcatgtcttaagaatcttgaaggaat-gtgaagaagctaatccaaatgccgtagtaatgctcattttagccatcat |
818 |
Q |
| |
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|||||||||||||| ||| |||| ||| ||| |||| ||||||||||| |||||||||| | |||||||| |||||||||||| |
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| T |
3981606 |
tgttgtttatgcatttctcaagattctggaatgaattgtgaagaagctgctccaaatgccatgacaatgctcaatttagccatcat |
3981521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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