View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_11 (Length: 355)
Name: NF7730_low_11
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 49433262 - 49433591
Alignment:
| Q |
17 |
acaatcaaatctatataatgtccactcattgttattaaatggtgatgcatctacaatctactttgacgttaatatgagtgtcaaggcatggcagagcatt |
116 |
Q |
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| T |
49433262 |
acaatcaaatctatataatgtccactcattgttattaaatggtgatgcatctacaatctactttgacgttaatatgagtgtcaaggcatggcagagcatt |
49433361 |
T |
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| Q |
117 |
ttgaatatgagtcaaatnnnnnnnnnncaataagatgaaaaatataatcagtcaagatgaaagaaacattagtatgactgtcaaggaatggcaaggcagg |
216 |
Q |
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| T |
49433362 |
ttgaatatgagtcaaataaaaaaaaaacaataagatgaaaaatataatcagtcaagatgaaagaaacattagtatgactgtcaaggaatggcaaggcaag |
49433461 |
T |
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| Q |
217 |
acattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgactgatcatccgagaaattaccatttcaaaa |
316 |
Q |
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| T |
49433462 |
acattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaatcaattgcttgactgatcatccgagaaattaccatttcaaaa |
49433561 |
T |
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| Q |
317 |
ttgaacacaattatttgcatccattcatct |
346 |
Q |
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| T |
49433562 |
ttgaacacaattatttgcatccattcatct |
49433591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 89 - 342
Target Start/End: Original strand, 22377595 - 22377848
Alignment:
| Q |
89 |
tatgagtgtcaaggcatggcagagcattttgaatatgagtcaaatnnnnnnnnnncaataagatgaaaaatataatcagtcaagatgaaagaaacattag |
188 |
Q |
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| T |
22377595 |
tatgagtgtcaaggcatggcagagcattttgaatatgaatcaaataaaaaaaaaacaataagatgaaaaatataatcagtcaagatgaaagaaacattag |
22377694 |
T |
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| Q |
189 |
tatgactgtcaaggaatggcaaggcaggacattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgact |
288 |
Q |
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| T |
22377695 |
tatgactgtgaaggcatggcaaggtaggacattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgact |
22377794 |
T |
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| Q |
289 |
gatcatccgagaaattaccatttcaaaattgaacacaattatttgcatccattc |
342 |
Q |
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| T |
22377795 |
gatcatccaagaaattaccatttcaaaattgaacacagttatttgcatccattc |
22377848 |
T |
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