View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_12 (Length: 334)
Name: NF7730_low_12
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_12 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 34463061 - 34462745
Alignment:
| Q |
18 |
atggagggagtaatagagactcccttatgcttaacaccttgtgcattatagtactatttatactcctaaccaaagatcattctcatcacaaaattaaaac |
117 |
Q |
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| T |
34463061 |
atggagggagtaatagacactcccttatgcttaacaccttgtgcattatagtactatttatactgctaaccaaagatcattctcaccacaaaaataaaac |
34462962 |
T |
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| Q |
118 |
tagtctttggctattaccatcaccaactgatcataaaatggaatattctcagaccaagtctcttgcagcttgtgcacaagttgattcaactcaacatgca |
217 |
Q |
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| T |
34462961 |
tagtctttggctattaccatcaccaacgtatcataaaatggaatattctcagaccaagtctcttgcagcttgtgcacaagttgattcaactcaacatgca |
34462862 |
T |
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| Q |
218 |
gtctctgacttcaagcgaccaattgcaaattttcgtccttgcatctggggacatcttttcctaaaatatgattctgaatcaatggtactacatatatttt |
317 |
Q |
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| T |
34462861 |
gtctctgacttcaaacgaccaattgcaaattttcgtccttgcatctggggacatcttttcctaaaatatgattctgaatcaatggtactacatatatttt |
34462762 |
T |
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| Q |
318 |
attttgcatgcaatatt |
334 |
Q |
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| T |
34462761 |
attttgcatgcaatatt |
34462745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 40 - 279
Target Start/End: Complemental strand, 34470609 - 34470370
Alignment:
| Q |
40 |
ccttatgcttaacaccttgtgcattatagtactatttatactcctaaccaaagatcattctcatcacaaaattaaaactagtctttggctattaccatca |
139 |
Q |
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| T |
34470609 |
ccttatgtttaacaccttgtgcattatagtactatttatactgctaaccaaagatcattctcaccacaaaaataaaactagtctttggctattaccatca |
34470510 |
T |
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| Q |
140 |
ccaactgatcataaaatggaatattctcagaccaagtctcttgcagcttgtgcacaagttgattcaactcaacatgcagtctctgacttcaagcgaccaa |
239 |
Q |
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| T |
34470509 |
ccaactgatcataaaatggaatattctcagaccaagtctcttgcagcttgtgcacaagttgattcaactcaacatgcagtctctgacttcaagcgaccaa |
34470410 |
T |
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| Q |
240 |
ttgcaaattttcgtccttgcatctggggacatcttttcct |
279 |
Q |
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| T |
34470409 |
ttgcaaattttcgtccttgcatctggcgaaattttttcct |
34470370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 331
Target Start/End: Complemental strand, 34488443 - 34488308
Alignment:
| Q |
196 |
agttgattcaactcaacatgcagtctctgacttcaagcgaccaattgcaaattttcgtccttgcatctggggacatcttttcctaaaatatgattctgaa |
295 |
Q |
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| T |
34488443 |
agttgattcaaccgaacatgcaattcctgacttcaagcgaccaattgtaaattttagtcctagcatttggaggaatgttttccttcagtatgattctgaa |
34488344 |
T |
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| Q |
296 |
tcaatggtactacatatattttattttgcatgcaat |
331 |
Q |
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| T |
34488343 |
tcagtggtactatatttaattaattttacatgcaat |
34488308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 34470027 - 34469968
Alignment:
| Q |
275 |
ttcctaaaatatgattctgaatcaatggtactacatatattttattttgcatgcaatatt |
334 |
Q |
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| T |
34470027 |
ttcctaaaatatgattctgaatcaatggtactacatatgttttatcttgcaagctatatt |
34469968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 307
Target Start/End: Original strand, 6128093 - 6128231
Alignment:
| Q |
169 |
gaccaagtctcttgcagcttgtgcacaagttgattcaactcaacatgcagtctctgacttcaagcgaccaattgcaaattttcgtccttgcatctgggga |
268 |
Q |
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||||| ||||||||||||| ||| |||||||||||| |||||| | ||| ||||| | | ||| |||| | ||||||| ||||| | | ||||| |
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| T |
6128093 |
gaccatgtctcttgcagctccctcaccagttgattcaacccaacatacggtccctgacattaggcggccaaatataaattttagtcctagtgtttggggg |
6128192 |
T |
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| Q |
269 |
catcttttcctaaaatatgattctgaatcaatggtacta |
307 |
Q |
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| T |
6128193 |
catattttccttcaatatgattctgaatccatggtacta |
6128231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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