View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_18 (Length: 236)
Name: NF7730_low_18
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 14176462 - 14176652
Alignment:
| Q |
1 |
tttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccctcctgtaagagttg |
100 |
Q |
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| T |
14176462 |
tttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttg |
14176561 |
T |
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| Q |
101 |
ctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggaga |
191 |
Q |
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| T |
14176562 |
ccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggaga |
14176652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28609414 - 28609224
Alignment:
| Q |
1 |
tttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccctcctgtaagagttg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28609414 |
tttcataagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttg |
28609315 |
T |
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| Q |
101 |
ctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggaga |
191 |
Q |
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| T |
28609314 |
ccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggaga |
28609224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12933192 - 12933382
Alignment:
| Q |
1 |
tttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccctcctgtaagagttg |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12933192 |
tttcatgagcaagaaactatgtcagattctactattctagaaacacctaaacgttatggtaaggttgatcttacacttaccactcctcctgtaagagttg |
12933291 |
T |
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| Q |
101 |
ctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggaga |
191 |
Q |
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| T |
12933292 |
ccacagaagggggagatcttgatgaagaccctggggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaagatggaga |
12933382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 15298982 - 15299172
Alignment:
| Q |
1 |
tttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccctcctgtaagagttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
15298982 |
tttcatgagcaagaaactatgtcagattctgctattccagaaacacctaaacgttatggtaaggttgatcttacagttaccactcctcctgtaagagttg |
15299081 |
T |
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| Q |
101 |
ctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatgatgaagatgttcaggatggaga |
191 |
Q |
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| T |
15299082 |
ccacagaagggggagatcttgatgaagaccctggggttaatggtgagttagtagttgaagatggtgatgaggaagatgttcaggatggaga |
15299172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 38995072 - 38994904
Alignment:
| Q |
1 |
tttcatgagcaagaaactatgtcagattctgctattctagaaacacctaaacgttatggtaaggttgatcttacacttaccacccctcctgtaagagttg |
100 |
Q |
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||||||||||||||||||||| || ||| | |||||| ||||||||||| | |||||||||||| |||||||| ||||| |||||| ||||||||| |
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| T |
38995072 |
tttcatgagcaagaaactatgacaaatt-tactattcctgaaacacctaagcacggtggtaaggttgaccttacactaaccactcctcctataagagttg |
38994974 |
T |
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| Q |
101 |
ctacagaagggggatatcttgatgaagaccctagggttgatggtgagccagtagttgaagatggtgatga |
170 |
Q |
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| T |
38994973 |
ccaaagaagggggagatcttgattaaaaccctagggttgatggtgagccaacaattgaagatggtgatga |
38994904 |
T |
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