View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_20 (Length: 220)
Name: NF7730_low_20
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 37162687 - 37162544
Alignment:
| Q |
72 |
ctcgcgatgtaaagcaatgctgtatttttatatggcattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattg |
171 |
Q |
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| T |
37162687 |
ctcgcgatgtatagcaatgctgtatttttatatggcattattaacttctgactgcccatacaagagtggagtaatgttgcaaaatagtggattttgattg |
37162588 |
T |
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| Q |
172 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttc |
215 |
Q |
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| T |
37162587 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttc |
37162544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 37162730 - 37162695
Alignment:
| Q |
43 |
atcaaaggctttttgctgtcgggataacactcgcga |
78 |
Q |
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| T |
37162730 |
atcaaaggctttttgctgtcgggataacactcgcga |
37162695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 596529 - 596422
Alignment:
| Q |
107 |
cattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaactgttttcttctgacggtgt |
206 |
Q |
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| T |
596529 |
cattattaacttgtaactacccatacaagagtggggttatgtggcaaaatagttgattttgattgaatgttagtgtaaaactggttttaattgacggtgg |
596430 |
T |
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| Q |
207 |
atattctt |
214 |
Q |
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| T |
596429 |
atattctt |
596422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 49250276 - 49250327
Alignment:
| Q |
136 |
agtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaac |
187 |
Q |
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| T |
49250276 |
agtggggtgatgttgcaaaatagtggattttcattggatgttaatgtaaaac |
49250327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 17511398 - 17511349
Alignment:
| Q |
145 |
atgttgcaaaatagtggattttgattggatattagtgtaaaactgttttc |
194 |
Q |
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| T |
17511398 |
atgtggcaaagtagtggattttcattggatgtcagtgtaaaactgttttc |
17511349 |
T |
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