View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_22 (Length: 203)
Name: NF7730_low_22
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 17196181 - 17196235
Alignment:
| Q |
133 |
tattctaccataaaccataattccatccaactcattaaacatcattacaacatta |
187 |
Q |
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| T |
17196181 |
tattctaccataaaccataattccatccaactcattaaacatcattacaacatta |
17196235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17196049 - 17196081
Alignment:
| Q |
1 |
acactatcacaaaccataattcaatccaaccca |
33 |
Q |
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| T |
17196049 |
acactatcacaaaccataattcaatccaaccca |
17196081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 17196059 - 17196103
Alignment:
| Q |
144 |
aaaccataattccatccaactcattaaacatcattacaacattat |
188 |
Q |
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| T |
17196059 |
aaaccataattcaatccaacccatcaaacataattacaacattat |
17196103 |
T |
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