View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_4 (Length: 538)
Name: NF7730_low_4
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 17341118 - 17340587
Alignment:
| Q |
1 |
tgtatgctattaatgccctttgaaaagtagtgtgaggcagatggggttcaatcccatcatattacatttcaaaactagtcaattcag---atgtttggat |
97 |
Q |
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| T |
17341118 |
tgtatgctattaatgtcctttgaaaagtagtgtgtggcagatggggttcaatcccatcatagtacatttcaaaactagtcaattcagtgcatgtttggat |
17341019 |
T |
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| Q |
98 |
gaacttgtccaaatcacattttgtttaaaatcacggtaaaatccatttttaacgcgaaagttttaattttcagcttcttaaaactacggcagatttaa-- |
195 |
Q |
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| T |
17341018 |
gaacgtcttcaaatcacgttttgtttaaaatcacggtaaaatctacttttaacgtggaagttataattttcagctttttaaaattacggcagatttacat |
17340919 |
T |
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| Q |
196 |
-------tgtgtagatatgtttttgctttcatcaaacgccactccaaacagacactcatatgtgacaataatttggtgaattattttgaggaaaatgtct |
288 |
Q |
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| T |
17340918 |
cgtaaagtgtgtagatgtgtttttgctt-catcaaacgccactccgaacagacactcatatgtaacaataatttggtgaattatttttaggaaaatgtct |
17340820 |
T |
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| Q |
289 |
tcttcagaaatattcatactactaagatatataattaggtgaggttgttagaaacaaatgcatgaatgttatgtttgaactatttgagcttatttgcttt |
388 |
Q |
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| T |
17340819 |
tcttgagaaatattcatactactaagatatataattaggtgaggttgttagaaacaaatgcatgaatgttatgtttgaactatttgagcttatttgcttt |
17340720 |
T |
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| Q |
389 |
tggaaatatactcataggagatggtttgtattggaaagctgaggaaaatgacatccaaattgaaaatgtgaagagggaattgcaagagaaagaagaaagc |
488 |
Q |
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| T |
17340719 |
tggaaatatactcataggagatggtttgtattggaaagctgaggaaaatgacatccaaattgaaaatctgaagagggaattgcaagagaaagaagaaagc |
17340620 |
T |
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| Q |
489 |
ataaaagctttaaaagctcaattaggttcagtg |
521 |
Q |
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| T |
17340619 |
ataaaagctttaaaagctcaattaggttcagtg |
17340587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 3075851 - 3075809
Alignment:
| Q |
200 |
tagatatgtttttgctttcatcaaacgccactccaaacagacact |
244 |
Q |
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| T |
3075851 |
tagatatgtttttg--ttcatcaaacgccactccaaacatacact |
3075809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 34250935 - 34250980
Alignment:
| Q |
198 |
tgtagatatgtttttgctttcatcaaacgccactccaaacagacact |
244 |
Q |
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| T |
34250935 |
tgtagatgtgattttg-tttcatcaaacgccactccaaacagacact |
34250980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 30872633 - 30872680
Alignment:
| Q |
196 |
tgtgtagatatgtttttgctttcatcaaacgccactccaaacagacact |
244 |
Q |
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| T |
30872633 |
tgtgcagatgtgtttttgcttt-atcaaacgtcactccaaacagacact |
30872680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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