View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_5 (Length: 443)
Name: NF7730_low_5
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 6 - 440
Target Start/End: Original strand, 3316788 - 3317225
Alignment:
| Q |
6 |
agttttccaccaaagtcccacatgctttttcacaattctaattgctctttctttctaagctacatttacggtttcccatgtatgcttgacgtatttattt |
105 |
Q |
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| T |
3316788 |
agttttccaccaaagtcccacatgctttttcacaattctaattgctctttctttctaagctacatttacaatttgccatgtatgcttcatgtatttattt |
3316887 |
T |
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| Q |
106 |
tgtaataatgccttacactacctacggtactattagtatgtttggacacaataagtaatatttgttgtgtttgtgtcagttttaggagagacttttaaag |
205 |
Q |
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| T |
3316888 |
tgtaataatgccttatactacctacggtactattagtatgtttggacacaataagtaatatttgttgtgtttgtgtcagttttaggagagacttttaaag |
3316987 |
T |
|
| Q |
206 |
ct---tgagttcacatcgtatgaagtcgacatagacatgtatgccagccacgatatatacacagacatcaaccatgatataaatttgtaggaaaatgacc |
302 |
Q |
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| T |
3316988 |
ctcgttgagttcacatcgtatgaagtcgacatagacatgtatgccagccacgatatatacacagacatcatccatgatataaatttgtaggaaaatgacc |
3317087 |
T |
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| Q |
303 |
aagatatttgtgctgctatgtcttctcttaatataaacccaaatcccaatcgatttgatcaaaaatcaaactacacctacctgtaattctcagatcactc |
402 |
Q |
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| T |
3317088 |
aagatatttgtgctgctatgtcttctcttaatataaacccaaatcccaatcgatttgatcaaaaatcaaactacaccaacctgtaattctcagatcactc |
3317187 |
T |
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| Q |
403 |
aaaaagtttgttttctttaattttgatgtccatctcat |
440 |
Q |
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| T |
3317188 |
gaaaagtttgttttctttaattttgatgtgcatctcat |
3317225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 3324224 - 3324326
Alignment:
| Q |
102 |
attttgtaataatgccttacactacctacggtactattagtatgtttggacacaataagtaatatttgttgtgtttgtgtcagttttaggagagactttt |
201 |
Q |
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| T |
3324224 |
attttgtaataatgccttatactacctacagta----tagtatgtttggacacaataagtaatatttgttgtggttgtgctggttttaggtgagactttt |
3324319 |
T |
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| Q |
202 |
aaagctt |
208 |
Q |
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| T |
3324320 |
aaagctt |
3324326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 3313635 - 3313687
Alignment:
| Q |
279 |
atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt |
331 |
Q |
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| T |
3313635 |
atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt |
3313687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 3320342 - 3320394
Alignment:
| Q |
279 |
atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt |
331 |
Q |
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| T |
3320342 |
atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt |
3320394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 3324098 - 3324147
Alignment:
| Q |
6 |
agttttccaccaaagtcccacatgctttttcacaattctaattgctcttt |
55 |
Q |
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||||||||||||| || ||||||||||| |||||||||||||| |||||| |
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| T |
3324098 |
agttttccaccaatgttccacatgctttctcacaattctaattactcttt |
3324147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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