View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7730_low_8 (Length: 416)
Name: NF7730_low_8
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7730_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 5332739 - 5332335
Alignment:
| Q |
1 |
tttagcttgattaatttttcaaggttttgtgccatggttttaaattgttttgtgcatacaacggctgtgttaacctagtgatattaaagaaatcatggtt |
100 |
Q |
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| T |
5332739 |
tttagcttgattaatttttcatggttttgtgccatggttttaaattgttttgtgcatacaacggctgtgttaacctagtgatattaaagaaatcatggtc |
5332640 |
T |
|
| Q |
101 |
accatggaaattgtggtcctaaagctttcttagagacttagtgtatgtttagattgactctgagtttatgtcaatgtgtttttgacaacactttgaaact |
200 |
Q |
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| T |
5332639 |
actatggaaattgtggtcctaaagctttcttagagacttagtgtatgtttagattgacactgagtttatgtcaatgtgtttttgacaacactttgaaact |
5332540 |
T |
|
| Q |
201 |
tcnnnnnnnntccggggccactaaaattttatcaaactcaaatacaaatatgcacatgataaacattgatattgcatgttgaagctacgatagttcatta |
300 |
Q |
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| T |
5332539 |
tcaaaaaaaatccggggccactaaaattttatcaaacaaaaatacaaatatgcacatgataaacatcgatattgcatgttgaagctacgatagttcatta |
5332440 |
T |
|
| Q |
301 |
gtnnnnnnnnnnnnnnnnntagttggttcatgccaagatttcaaaaatggtctctaccaaaactttgacaacgatgtcaaggttatttatgtcttgcatc |
400 |
Q |
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| T |
5332439 |
gtaaaaaaatattaaaaaatagttggttcatgccaagatttcaaaaatggtctctaccaaaactttgacaacgatgtcaaggttatttatgtcttgcatc |
5332340 |
T |
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| Q |
401 |
atatt |
405 |
Q |
| |
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||||| |
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| T |
5332339 |
atatt |
5332335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 5350458 - 5350054
Alignment:
| Q |
1 |
tttagcttgattaatttttcaaggttttgtgccatggttttaaattgttttgtgcatacaacggctgtgttaacctagtgatattaaagaaatcatggtt |
100 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350458 |
tttagcttgattaatttttcatggttttgtgccatggttttaaattgttttgtgcatacaacggctgtgttaacctagtgatattaaagaaatcatggtc |
5350359 |
T |
|
| Q |
101 |
accatggaaattgtggtcctaaagctttcttagagacttagtgtatgtttagattgactctgagtttatgtcaatgtgtttttgacaacactttgaaact |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350358 |
actatggaaattgtggtcctaaagctttcttagagacttagtgtatgtttagattgacactgagtttatgtcaatgtgtttttgacaacactttgaaact |
5350259 |
T |
|
| Q |
201 |
tcnnnnnnnntccggggccactaaaattttatcaaactcaaatacaaatatgcacatgataaacattgatattgcatgttgaagctacgatagttcatta |
300 |
Q |
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| T |
5350258 |
tcaaaaaaaatccggggccactaaaattttatcaaacaaaaatacaaatatgcacatgataaacatcgatattgcatgttgaagctacgatagttcatta |
5350159 |
T |
|
| Q |
301 |
gtnnnnnnnnnnnnnnnnntagttggttcatgccaagatttcaaaaatggtctctaccaaaactttgacaacgatgtcaaggttatttatgtcttgcatc |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350158 |
gtaaaaaaatattaaaaaatagttggttcatgccaagatttcaaaaatggtctctaccaaaactttgacaacgatgtcaaggttatttatgtcttgcatc |
5350059 |
T |
|
| Q |
401 |
atatt |
405 |
Q |
| |
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||||| |
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|
| T |
5350058 |
atatt |
5350054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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