View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7730_low_9 (Length: 380)

Name: NF7730_low_9
Description: NF7730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7730_low_9
NF7730_low_9
[»] chr8 (10 HSPs)
chr8 (161-365)||(4472192-4472395)
chr8 (1-142)||(4472062-4472203)
chr8 (211-353)||(39785590-39785733)
chr8 (210-365)||(10100662-10100817)
chr8 (240-287)||(5654673-5654720)
chr8 (190-312)||(6863078-6863201)
chr8 (226-365)||(34018199-34018339)
chr8 (220-305)||(11109573-11109658)
chr8 (220-310)||(11595556-11595648)
chr8 (190-287)||(34856453-34856550)
[»] chr5 (6 HSPs)
chr5 (190-365)||(33155527-33155703)
chr5 (211-310)||(2818988-2819087)
chr5 (220-280)||(3769833-3769893)
chr5 (192-287)||(31661002-31661097)
chr5 (254-309)||(1995141-1995196)
chr5 (254-332)||(6287199-6287278)
[»] chr7 (4 HSPs)
chr7 (190-284)||(7602824-7602917)
chr7 (191-309)||(26853081-26853199)
chr7 (191-287)||(46981316-46981410)
chr7 (295-363)||(41603001-41603069)
[»] chr6 (3 HSPs)
chr6 (263-365)||(2188683-2188784)
chr6 (255-365)||(957199-957309)
chr6 (226-352)||(2572263-2572391)
[»] chr3 (5 HSPs)
chr3 (191-286)||(35052531-35052626)
chr3 (210-312)||(40386335-40386436)
chr3 (209-305)||(42347356-42347452)
chr3 (253-325)||(2585907-2585980)
chr3 (231-309)||(7882811-7882889)
[»] chr1 (1 HSPs)
chr1 (253-316)||(39742558-39742621)
[»] chr4 (5 HSPs)
chr4 (211-304)||(34113677-34113770)
chr4 (256-352)||(43006666-43006763)
chr4 (240-316)||(6365226-6365302)
chr4 (211-326)||(8482358-8482474)
chr4 (254-345)||(26688726-26688817)
[»] chr2 (2 HSPs)
chr2 (251-308)||(19513993-19514050)
chr2 (254-310)||(43931734-43931790)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 161 - 365
Target Start/End: Original strand, 4472192 - 4472395
Alignment:
Q  161 catgtcactcatatgagttgaagttgatactttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaata 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4472192 catgtcactcatatgagttgaagttgatactttgtttaacatttacatgcaaaatggtcttgcatcatgcacaagtgtctttttcactaatggatcaata 4472291  T
Q  261 agtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggtaaaactaatttatgcgtaatgcaagatttgtctaacttgtgtaccata 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4472292 agtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggtaaaactaatttatgcgtaatgcaagatttgtctaacttgtgta-cata 4472390  T
Q  361 gaatt 365  Q
    |||||    
T  4472391 gaatt 4472395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4472062 - 4472203
Alignment:
Q  1 aggtgagaagtaggtttaaaacaccaaaataatcattattctgtcatataaaacatcatttgggagataactccctaaccctccaagagatatgactctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  4472062 aggtgagaagtaggtttaaaacaccaaaataatcattattctgtcatataaaacatcatttgagagataactccctaaccctccgagagatatgactctc 4472161  T
Q  101 taactctctaggagataagtctttaatccccatgacactcat 142  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  4472162 taactctctaagagataagtctttaatccccatgtcactcat 4472203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 353
Target Start/End: Complemental strand, 39785733 - 39785590
Alignment:
Q  211 aaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatg 310  Q
    |||||||| |||||||||||||||||||| ||| | | | | | |||| |||||||||||| ||||||||||||||| |||  |||||||||||| ||||    
T  39785733 aaaatggtcttgcatcatgcacaagtgtcctttgcgccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 39785634  T
Q  311 gt-aaaactaatttatgcgtaatgcaagatttgtctaacttgtg 353  Q
    || |||||||  |||||| | |||||||| |||||| |||||||    
T  39785633 gtgaaaactagcttatgcatgatgcaagacttgtctcacttgtg 39785590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 10100817 - 10100662
Alignment:
Q  210 caaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaat 309  Q
    ||||||||| ||||||||||| ||||| |||||||||| | || |||||||||| |||| ||||||||||| ||| ||  ||||  |||||||||| |      
T  10100817 caaaatggtcttgcatcatgcgcaagtatctttttcacaattgaatcaataagttatattatatctcatttgattgaatagtaaagtttattgatccata 10100718  T
Q  310 ggtaaaactaatttatgcgtaatgcaagatttgtctaacttgtgtaccatagaatt 365  Q
       |||||||| |||||| ||||||||||||| ||| | |||| ||||||| ||||    
T  10100717 ataaaaactaacttatgcataatgcaagatttttctcagttgtttaccatataatt 10100662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 5654673 - 5654720
Alignment:
Q  240 tttttcactaatggatcaataagtcatatcatatctcatttaatttaa 287  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  5654673 tttttcactattggatcaataagtcatatcatatctcatttaatttaa 5654720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 312
Target Start/End: Complemental strand, 6863201 - 6863078
Alignment:
Q  190 ctttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataa-gtcatatcatatctcatttaatttaaa 288  Q
    |||||| ||||||  ||| |||||||||| ||||| |||||||||||| ||||| ||| | | ||| || || |||| ||||||| |||||||||||||     
T  6863201 ctttgtctaacatgcacaagcaaaatggtcttgcaccatgcacaagtgccttttccaccattagataaaaaaagtcacatcatatttcatttaatttaat 6863102  T
Q  289 tgtaagatttattgatctaatggt 312  Q
     || ||||||||||||| ||||||    
T  6863101 ggtgagatttattgatccaatggt 6863078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 365
Target Start/End: Original strand, 34018199 - 34018339
Alignment:
Q  226 catgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggt-aaaactaattta 324  Q
    |||||||||||  ||||||||| |  ||||||| |||||| ||||| |||||||||||||||  ||   ||||||||||| |||||| |||||||  ||     
T  34018199 catgcacaagtaactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaactagcttg 34018298  T
Q  325 tgcgtaatgcaagatttgtctaacttgtgtaccatagaatt 365  Q
    ||| | |||||||| |||||| |||| || ||| |||||||    
T  34018299 tgcatgatgcaagacttgtctcacttatgcaccttagaatt 34018339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 11109573 - 11109658
Alignment:
Q  220 ttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatc 305  Q
    ||||||||||||||| | || |||| |||| | ||||||| | |||||||||||| ||||||||||||  |||  |||||||||||    
T  11109573 ttgcatcatgcacaaatatcctttttactatttgatcaatcaatcatatcatatcccatttaatttaatagtagaatttattgatc 11109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 11595556 - 11595648
Alignment:
Q  220 ttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaa--tgtaagatttattgatctaatg 310  Q
    ||||||||||||||| | || |||| |||| | ||||||| | |||||||||||| |||||||||||||  ||||  ||||||||||| ||||    
T  11595556 ttgcatcatgcacaaatatcctttttactatttgatcaatcattcatatcatatcccatttaatttaaaagtgtagaatttattgatccaatg 11595648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 34856550 - 34856453
Alignment:
Q  190 ctttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaa 287  Q
    |||||| ||||||  ||| ||||||| || ||||| |||||||||||||||||||||  | ||||| || ||| |  ||||||| || ||||||||||    
T  34856550 ctttgtctaacatgcacaagcaaaatagtcttgcaccatgcacaagtgtctttttcataattggataaagaagccgcatcatatttcttttaatttaa 34856453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 365
Target Start/End: Original strand, 33155527 - 33155703
Alignment:
Q  190 ctttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaat 289  Q
    |||||||||||||  ||| ||||||||||  |||| |||||||||||| ||||||||| |  ||||||| |||||| ||||| |||||||||||||||      
T  33155527 ctttgtttaacatgcacaagcaaaatggtcctgcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatg 33155626  T
Q  290 gtaagatttattgatctaatggt-aaaactaatttatgcgtaatgcaagatttgtctaacttgtgtaccatagaatt 365  Q
    ||  |||||||||||| |||||| |||||||  || ||| | |||||||| |||||| ||||||| ||| |||||||    
T  33155627 gtgggatttattgatccaatggtgaaaactagcttgtgcatgatgcaagacttgtctcacttgtgcaccttagaatt 33155703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 310
Target Start/End: Complemental strand, 2819087 - 2818988
Alignment:
Q  211 aaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatg 310  Q
    |||||||| ||||| |||||||||  |||||||| |||| |||||||||||||   ||||||| ||||||||| |||  || ||||||||||||| ||||    
T  2819087 aaaatggtcttgcaccatgcacaaacgtcttttttactattggatcaataagttgcatcatatttcatttaatctaatggtgagatttattgatccaatg 2818988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 3769833 - 3769893
Alignment:
Q  220 ttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcattt 280  Q
    ||||| |||||||||||||  ||||||| | |||||||| |||||||||||||||||||||    
T  3769833 ttgcaccatgcacaagtgttcttttcaccattggatcaacaagtcatatcatatctcattt 3769893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 31661002 - 31661097
Alignment:
Q  192 ttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaa 287  Q
    |||||||||||  ||  |||||||||| ||| | ||| | ||||| |||||||||  | ||||||||||| |||||| ||||||||||||||||||    
T  31661002 ttgtttaacatccactagcaaaatggtcttgtaccatacgcaagtatctttttcatcagtggatcaataaatcatattatatctcatttaatttaa 31661097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 1995196 - 1995141
Alignment:
Q  254 atcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaat 309  Q
    |||||||| ||||||||||| |||| |||||||| ||||| |||||| ||||||||    
T  1995196 atcaataaatcatatcatatttcatataatttaattgtaaaatttatcgatctaat 1995141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 6287278 - 6287199
Alignment:
Q  254 atcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggt-aaaactaatttatgcgtaat 332  Q
    |||||||| ||||||||||| |||||||||||||  | || |||||||||| ||||| | |||||||| |||||| ||||    
T  6287278 atcaataaatcatatcatatatcatttaatttaacggcaaaatttattgatttaatgatgaaaactaacttatgcataat 6287199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 7602824 - 7602917
Alignment:
Q  190 ctttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatt 284  Q
    |||||| ||||||  ||| | |||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  7602824 ctttgtctaacatgcacaagtaaaatggttttgcaccatgcacaaatgtctttttcactattggatcaataa-tcacatcatatctcatttaatt 7602917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 26853081 - 26853199
Alignment:
Q  191 tttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatg 290  Q
    ||||||||||||  ||| | |||||||| |||||||||| | || ||||||||||||   ||||| ||||||| | ||| ||| ||||||| |||||  |    
T  26853081 tttgtttaacatgcacaagtaaaatggtcttgcatcatgaaaaaatgtctttttcaccgttggattaataagtaacatcttatatcatttagtttaatgg 26853180  T
Q  291 taagatttattgatctaat 309  Q
    ||||||||||| |||||||    
T  26853181 taagatttattaatctaat 26853199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 46981316 - 46981410
Alignment:
Q  191 tttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaa 287  Q
    ||||| ||||||  ||| || ||||||| ||||| |||||||||||| | ||||||| | |||||||| ||||||||  || ||||| |||||||||    
T  46981316 tttgtctaacatgcacaagctaaatggtcttgcaccatgcacaagtgccgttttcaccattggatcaaaaagtcata--atttctcaattaatttaa 46981410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 41603001 - 41603069
Alignment:
Q  295 atttattgatctaatggtaaaactaatttatgcgtaatgcaagatttgtctaacttgtgtaccatagaa 363  Q
    ||||||||||||||  || |||||| ||||||| | ||| |||| |||||||||||| ||| |||||||    
T  41603001 atttattgatctaaaagtgaaactagtttatgcatgatgtaagagttgtctaacttgcgtatcatagaa 41603069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 2188784 - 2188683
Alignment:
Q  263 tcatatcatatctcatttaatttaaatgtaagatttattgatctaatggta-aaactaatttatgcgtaatgcaagatttgtctaacttgtgtaccatag 361  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| || |||| ||||||  || | | | |||||||||||||||  |||||| |||||||    
T  2188784 tcatatcatatttcatttaatttaattgtaagatttattgatccaaaggtagaaactagcttctacatgatgcaagatttgtct--cttgtgcaccatag 2188687  T
Q  362 aatt 365  Q
    ||||    
T  2188686 aatt 2188683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 365
Target Start/End: Original strand, 957199 - 957309
Alignment:
Q  255 tcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggtaaaa-ctaatttatgcgtaatgcaagatttgtctaacttgtg 353  Q
    ||||||||| | || |||||||||| |||||||  || || ||| |||||||||| |||||| |||| |||| | ||||||||||||||||| |||||||    
T  957199 tcaataagtgacattatatctcattaaatttaatggtgaggttt-ttgatctaattgtaaaaactaacttatacataatgcaagatttgtctcacttgtg 957297  T
Q  354 taccatagaatt 365  Q
    || |||||||||    
T  957298 tatcatagaatt 957309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 352
Target Start/End: Complemental strand, 2572391 - 2572263
Alignment:
Q  226 catgcacaagtgtctttttcactaatggatcaataagtcatatcatatc-tcatttaatttaaatgtaagatttattgatctaatg-gtaaaactaattt 323  Q
    ||||||||||||| ||||| || | | ||||||||||||| |||| ||| |||| ||||||||  || |||||||||| || ||||  ||||||||| ||    
T  2572391 catgcacaagtgttttttttaccattagatcaataagtcacatcacatcttcatataatttaatcgtgagatttattggtccaatgtttaaaactaaatt 2572292  T
Q  324 atgcgtaatgcaagatttgtctaacttgt 352  Q
     ||| | ||||||||||||||| ||||||    
T  2572291 ttgcatgatgcaagatttgtcttacttgt 2572263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 35052626 - 35052531
Alignment:
Q  191 tttgtttaacatttacatgcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaattta 286  Q
    ||||| ||||||  ||| |||||||| | |||||||||||||||||||||||| ||| | |||||||| |||||| ||||||| | ||||| ||||    
T  35052626 tttgtctaacatgcacaagcaaaatgatattgcatcatgcacaagtgtcttttccaccattggatcaaaaagtcacatcatatttaatttatttta 35052531  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 40386436 - 40386335
Alignment:
Q  210 caaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaat 309  Q
    ||||| ||||||||| |||||||||||||||||| ||| | |||||||| |||||| || ||   |||||||||||||  || ||||||||||||| |||    
T  40386436 caaaaaggttttgcaccatgcacaagtgtcttttgcaccattggatcaa-aagtcacataattattcatttaatttaatagtgagatttattgatccaat 40386338  T
Q  310 ggt 312  Q
    |||    
T  40386337 ggt 40386335  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 42347452 - 42347356
Alignment:
Q  209 gcaaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatc 305  Q
    |||||||||| ||||| |||| | ||||||| ||||||| | ||||| ||||||||  |||||||||||| ||||||||   | |||||||||||||    
T  42347452 gcaaaatggtcttgcaccatgaataagtgtccttttcaccattggattaataagtcgcatcatatctcatataatttaatgatgagatttattgatc 42347356  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 2585907 - 2585980
Alignment:
Q  253 gatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatgg-taaaactaatttat 325  Q
    |||||||||||||||| ||||||||||||||||||   | | ||||||| ||||||||| |||||||| |||||    
T  2585907 gatcaataagtcatattatatctcatttaatttaacaatgaaatttatttatctaatggttaaaactagtttat 2585980  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 7882811 - 7882889
Alignment:
Q  231 acaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaat 309  Q
    ||||||||| |||| |||| | |||| | |||| ||||||| |||||||||||||||   ||| |||||||||||||||    
T  7882811 acaagtgtcgtttttactattagatccaaaagttatatcatttctcatttaatttaataataaaatttattgatctaat 7882889  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 39742621 - 39742558
Alignment:
Q  253 gatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggtaaaa 316  Q
    |||||||||||||| |||||| |||||||||||||  ||  ||||||||||||||| |||||||    
T  39742621 gatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaagggtaaaa 39742558  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 34113770 - 34113677
Alignment:
Q  211 aaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgat 304  Q
    ||||| || ||||||||||||||||| || |||  |  | | ||||||||||||| ||||||| |||||||||||||  || ||||||||||||    
T  34113770 aaaattgtcttgcatcatgcacaagtatcatttatatcatttgatcaataagtcacatcatatatcatttaatttaatagtgagatttattgat 34113677  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 43006763 - 43006666
Alignment:
Q  256 caataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggt-aaaactaatttatgcgtaatgcaagatttgtctaacttgt 352  Q
    |||||||||  ||||||| |||||| || ||| ||||||||||||||||| |||||| ||||| ||||| ||  |||||||||| |||| | ||||||    
T  43006763 caataagtcgcatcatatttcatttgatctaattgtaagatttattgatcaaatggtgaaaaccaatttgtgtataatgcaagacttgttttacttgt 43006666  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 6365302 - 6365226
Alignment:
Q  240 tttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggtaaaa 316  Q
    ||||| || ||| |||||||| ||||||| |||||| |||||||||||  || | ||||||||||| |||| |||||    
T  6365302 ttttttaccaatagatcaatatgtcatattatatcttatttaatttaatagtgaaatttattgatccaatgataaaa 6365226  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 8482474 - 8482358
Alignment:
Q  211 aaaatggttttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatg 310  Q
    |||||||| |||||  ||||||||| ||||  | ||| | | |||||| ||||||| |||||| |||||||||||||  || | ||||||||| | ||||    
T  8482474 aaaatggtcttgcactatgcacaagcgtctgatccaccattagatcaaaaagtcatgtcatatttcatttaatttaatggtgaaatttattgaaccaatg 8482375  T
Q  311 gt-aaaactaatttatg 326  Q
    || ||||||| ||||||    
T  8482374 gtgaaaactagtttatg 8482358  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 26688726 - 26688817
Alignment:
Q  254 atcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatggt-aaaactaatttatgcgtaatgcaagatttgtct 345  Q
    ||||||||  ||||| |||||||||||||||| ||||   || ||||||||| |||| | |||||||||||| || | |||||||||||||||    
T  26688726 atcaataaaccatatgatatctcatttaattt-aatggtggagttattgatcaaatgatgaaaactaatttaggcatgatgcaagatttgtct 26688817  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 19514050 - 19513993
Alignment:
Q  251 tggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaa 308  Q
    ||||| |||||||||||| |||| |||||||||||||   | ||||||||||||||||    
T  19514050 tggataaataagtcatattatatttcatttaatttaatgatgagatttattgatctaa 19513993  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 43931734 - 43931790
Alignment:
Q  254 atcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatg 310  Q
    |||||||||||| ||||||| |||||| ||||||  || ||||||||| ||||||||    
T  43931734 atcaataagtcacatcatatatcatttgatttaatggtgagatttattcatctaatg 43931790  T

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