View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7731_low_11 (Length: 234)

Name: NF7731_low_11
Description: NF7731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7731_low_11
NF7731_low_11
[»] chr7 (16 HSPs)
chr7 (15-216)||(27830935-27831136)
chr7 (47-216)||(8659302-8659471)
chr7 (68-216)||(1301420-1301568)
chr7 (32-208)||(8654374-8654550)
chr7 (32-216)||(10494434-10494618)
chr7 (110-216)||(3147266-3147372)
chr7 (32-216)||(8667343-8667527)
chr7 (75-202)||(8545600-8545727)
chr7 (68-214)||(17260201-17260347)
chr7 (32-216)||(13333516-13333700)
chr7 (68-208)||(8646837-8646977)
chr7 (69-216)||(8585766-8585913)
chr7 (102-208)||(29581909-29582015)
chr7 (75-216)||(7877793-7877934)
chr7 (75-177)||(8570278-8570380)
chr7 (102-208)||(29577740-29577846)
[»] chr8 (2 HSPs)
chr8 (15-208)||(43744723-43744916)
chr8 (75-216)||(12528471-12528612)
[»] chr2 (8 HSPs)
chr2 (18-216)||(16657577-16657775)
chr2 (102-216)||(7542220-7542334)
chr2 (32-208)||(14703332-14703508)
chr2 (69-208)||(16662060-16662199)
chr2 (111-216)||(12258641-12258746)
chr2 (68-216)||(43625372-43625520)
chr2 (110-208)||(12234691-12234789)
chr2 (172-216)||(12245466-12245510)
[»] chr5 (1 HSPs)
chr5 (15-208)||(28219825-28220018)
[»] chr1 (2 HSPs)
chr1 (69-216)||(4678618-4678765)
chr1 (41-216)||(15594967-15595142)
[»] chr4 (3 HSPs)
chr4 (114-211)||(35132454-35132551)
chr4 (32-216)||(9335951-9336135)
chr4 (72-208)||(30775216-30775352)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 27831136 - 27830935
Alignment:
Q  15 aagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcc 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  27831136 aagaagtcaatgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcacattaggttctcagcctcc 27831037  T
Q  115 tcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27831036 tcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaaatagttcaccatcctattatcaaagtcctctccaccaag 27830937  T
Q  215 gt 216  Q
    ||    
T  27830936 gt 27830935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 8659302 - 8659471
Alignment:
Q  47 ctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccact 146  Q
    ||||| ||| ||| ||| || ||||||||||||||| |||||| |||| ||    ||||||| |||||| |||| | ||||||| |||||||||||||||    
T  8659302 ctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccact 8659401  T
Q  147 cttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
     | |||||||| |||||| |||| ||||||||||||||||| ||  |||||||||||||||| |||||||    
T  8659402 ttattcttctttttgaactcctctacaaagtagttcaccattctgctatcaaagtcctctcctccaaggt 8659471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 1301420 - 1301568
Alignment:
Q  68 aaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacc 167  Q
    |||||||||||||||||||||| |||| ||     |||||| |||||| |||| | |  |||| ||||||||||||||| | ||||||||  ||||| ||    
T  1301420 aaaagagagtgtcctttttgccctctcacacgcaattctcaacctccttaaggatttctggttaccactaatgtccactttattcttctttctgaactcc 1301519  T
Q  168 tccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    || ||||||||| ||||||| |||||||||||||||||||| |||||||    
T  1301520 tctacaaagtagctcaccattctattatcaaagtcctctcctccaaggt 1301568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 8654374 - 8654550
Alignment:
Q  32 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 131  Q
    |||||| ||||||| ||||| ||| ||| ||| || |||||||||| ||||||||||| |||| ||    ||||||| |||||| |||| | |||||||     
T  8654374 aaataaagcatctacctcaacagtggtgacaaaagtaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggtta 8654473  T
Q  132 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    || ||||| |||||| | |||||||| |||||| |||| |||||||||| |||||| || ||||||||||| |||||    
T  8654474 ccgctaatttccactttattcttctttttgaactcctctacaaagtagtacaccattctgttatcaaagtcttctcc 8654550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 10494618 - 10494434
Alignment:
Q  32 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 131  Q
    |||||| ||||| | |||||  || ||| ||| ||||||||||||| ||||||||||| |||| ||    ||||||| |||||| |||| | |||| |||    
T  10494618 aaataaagcatcgacctcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattc 10494519  T
Q  132 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    ||||| ||||||||  | |||||||| |||||| |||| ||||| || |||||||| || ||||| ||||||||||| |||||||    
T  10494518 ccactgatgtccacgttattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctcccccaaggt 10494434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 3147266 - 3147372
Alignment:
Q  110 cctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcca 209  Q
    |||||| |||||||||| |||| |||||||||| ||  | ||||||||||| ||| ||    |||||||||||||||||||||||||||||||||||||     
T  3147266 cctccttaaggctcttgagttctcactaatgtctaccttgttcttcttcttaaactcccgtgcaaagtagttcaccatcctattatcaaagtcctctccc 3147365  T
Q  210 ccaaggt 216  Q
    |||||||    
T  3147366 ccaaggt 3147372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 8667343 - 8667527
Alignment:
Q  32 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 131  Q
    |||||| ||||||| ||||| ||| ||  ||| || |||||||||| ||||||||||| |||| ||    ||||||| |||||| |||| | ||||||||    
T  8667343 aaataaagcatctacctcaacagtggtaacaaaagcaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttc 8667442  T
Q  132 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
      ||| ||||||||| | |||||||| || ||| |||| ||||| ||||||||||| || ||||| |||||||| || |||||||    
T  8667443 tgactgatgtccactttattcttcttttttaactcctcaacaaaatagttcaccattctgttatcgaagtcctcgcccccaaggt 8667527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 8545600 - 8545727
Alignment:
Q  75 agtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 174  Q
    |||||||||||||||||||| ||    ||||||| |||||||||||||  |||||||| |||||| ||| |  | |||||| |||||||| ||| |||||    
T  8545600 agtgtcctttttgccttctcacaggcagttctcaacctcctcaaggcttctgggttccgactaatatcctcattgttcttcctcttgaactccttcacaa 8545699  T
Q  175 agtagttcaccatcctattatcaaagtc 202  Q
    |||| |||||||| || |||||||||||    
T  8545700 agtaattcaccattctgttatcaaagtc 8545727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 17260201 - 17260347
Alignment:
Q  68 aaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttc-ttcttcttgaacac 166  Q
    |||||| |||||||||||||| || || |||   ||||||| |||||| |||||| ||||||||||| ||||||||| | ||||| ||||| |||| | |    
T  17260201 aaaagaaagtgtcctttttgctttttcacatgcagttctcaacctccttaaggcttttgggttcccaataatgtccaattttttcgttctt-ttgatctc 17260299  T
Q  167 ctccacaaagtagttcaccatcctattatcaaagtcctctccaccaag 214  Q
    ||| ||||| |||| |||||| ||||||||||||||||| || |||||    
T  17260300 ctctacaaaatagtacaccattctattatcaaagtcctcacccccaag 17260347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 13333700 - 13333516
Alignment:
Q  32 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 131  Q
    |||||| |||||||  |||| ||| ||| ||| |||||| |||||| |||||||| || |||| ||    ||||||| |||||| |||| | ||||||||    
T  13333700 aaataaagcatctacttcaacagtggtgacaaaagaaaaggagagtatccttttttccctctcacaggcagttctcaacctccttaaggattttgggttc 13333601  T
Q  132 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    ||||| || || ||  | |||||||| |||||| |||| ||||| ||||||||||| || ||||| ||||| ||||| |||||||    
T  13333600 ccactgatatcgacgttattcttctttttgaactcctcaacaaaatagttcaccattctgttatcgaagtcttctcccccaaggt 13333516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 8646837 - 8646977
Alignment:
Q  68 aaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacc 167  Q
    |||||| ||||||||||||||  ||||||||   ||||||| |||||| |||||||||| ||| ||| ||||||||||  | |||||||| || ||  |     
T  8646837 aaaagatagtgtcctttttgctctctcgcatgccgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttgttaaattct 8646936  T
Q  168 tccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    |   |||||| || |||||| ||| ||||||||||||||||    
T  8646937 tgtgcaaagtggtccaccattctactatcaaagtcctctcc 8646977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 8585913 - 8585766
Alignment:
Q  69 aaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacct 168  Q
    ||||| ||||||||||||||||| || |||   ||||| | || |||||| ||||||||||||  | |||| |||||  | |||||  |||| ||  |||    
T  8585913 aaagaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaattcct 8585814  T
Q  169 ccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    | ||||||||||||| ||| || |||||||||||| |||| |||||||    
T  8585813 caacaaagtagttcaacattctgttatcaaagtcccctcccccaaggt 8585766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 29582015 - 29581909
Alignment:
Q  102 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagt 201  Q
    ||||||||| |||| || ||| |||||||||||||||||||||   | |||||| |||| ||| | | | ||||||| |||||||| |  ||||||||||    
T  29582015 gttctcagcttccttaaagcttttgggttcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagt 29581916  T
Q  202 cctctcc 208  Q
    |||||||    
T  29581915 cctctcc 29581909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 7877934 - 7877793
Alignment:
Q  75 agtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 174  Q
    ||||||||||| ||| |||| |||   ||||||| |||||| | ||| || ||||| |||| |||||||||| | |||||| |||| ||| ||  ||| |    
T  7877934 agtgtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcacta 7877835  T
Q  175 agtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    | | ||||| ||| || |||||||||||||||||||| ||||    
T  7877834 aatggttcaacattctgttatcaaagtcctctccacctaggt 7877793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 8570278 - 8570380
Alignment:
Q  75 agtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 174  Q
    ||||||||||||||| |||| ||    ||||| | ||||||||||||| ||||||||| |||||| ||| |  | |||||||||||||||  || |||||    
T  8570278 agtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttcttcttgaacttcttcacaa 8570377  T
Q  175 agt 177  Q
    |||    
T  8570378 agt 8570380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 29577846 - 29577740
Alignment:
Q  102 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagt 201  Q
    ||||||||| |||| || ||| ||||||||  ||||||||||||  | |||||| |||| ||| | | |||||||| | |||||||  ||||||| ||||    
T  29577846 gttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagt 29577747  T
Q  202 cctctcc 208  Q
    |||||||    
T  29577746 cctctcc 29577740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 43744723 - 43744916
Alignment:
Q  15 aagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcc 114  Q
    ||||| ||| ||||||||||||| | ||||| ||||||||| ||| |||||| |||||| | ||||||||||||  | ||||||   ||||||| |||||    
T  43744723 aagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagataatgtcctttttgctctttcgcatgctgttctcaacctcc 43744822  T
Q  115 tcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    | || ||||||||||| ||| ||||||||||  | ||||||||||| ||| ||||  | |||||||||||||||||||||||||| ||||||||    
T  43744823 ttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctattatcaaaatcctctcc 43744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 12528471 - 12528612
Alignment:
Q  75 agtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 174  Q
    ||||||||||| ||||||||||| |  |||||||  ||||| | |||| ||| ||||||| ||||||| ||| | |||||| |||| ||| | | |||||    
T  12528471 agtgtccttttcgccttctcgcagttagttctcaatctccttagggcttttgagttcccaataatgtcaactttgttcttcctcttaaactctttcacaa 12528570  T
Q  175 agtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    |||  |||||||| | |||||||||||||||||| |||||||    
T  12528571 agtgattcaccattcgattatcaaagtcctctcctccaaggt 12528612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 16657775 - 16657577
Alignment:
Q  18 aagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctca 117  Q
    |||||| | |||| |||||| | ||||| ||||| ||| ||| ||| || ||||||||||||||| |||||| |||| |||   ||||||| ||||||||    
T  16657775 aagtcaattccctgaaataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctca 16657676  T
Q  118 aggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    ||||||||| ||||||||| ||||||||  | |||||||| |  ||| |||| ||||||||||||||| | || ||||||||||||||||| |||||||    
T  16657675 aggctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaaagtagttcaccgttctgttatcaaagtcctctcccccaaggt 16657577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 7542220 - 7542334
Alignment:
Q  102 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagt 201  Q
    ||||||| ||||||||||||| |||| |||||||||||||||||| | |||||  |||||||| | |  |||||||||||| |||| |||||||||||||    
T  7542220 gttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcgccattctattatcaaagt 7542319  T
Q  202 cctctccaccaaggt 216  Q
    | |||||||||||||    
T  7542320 cttctccaccaaggt 7542334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 14703332 - 14703508
Alignment:
Q  32 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 131  Q
    |||||| ||||||| ||||||||| | | ||||    ||||| ||||| ||||||||| |||||||   ||||||||  ||||| |||||| |||| ||     
T  14703332 aaataaagcatctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctccttaaggcttttggattt 14703431  T
Q  132 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    ||||||||||||| ||| || ||  |||||||| | |  ||||||||||||||||| || ||||| |||||||||||    
T  14703432 ccactaatgtccaatctgttttttctcttgaactcttgaacaaagtagttcaccattctgttatcgaagtcctctcc 14703508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 16662199 - 16662060
Alignment:
Q  69 aaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacct 168  Q
    ||||||||||||||||| ||||| || ||    ||||||| |||||||||||||||||| |||| | | || |||||| | |||||| | || ||  | |    
T  16662199 aaagagagtgtccttttcgccttttcacaagaagttctcaacctcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaattctt 16662100  T
Q  169 ccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
     |||||||||||||| ||| || |||||||||||||||||    
T  16662099 tcacaaagtagttcaacattctgttatcaaagtcctctcc 16662060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 12258746 - 12258641
Alignment:
Q  111 ctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccac 210  Q
    |||||||| |||||||| || ||||| || || ||| | |||||  |||||||| | || ||||||||  ||||||| |||||||||||||||||||| |    
T  12258746 ctcctcaaagctcttggatttccacttatatctactttgttctttctcttgaactcttctacaaagtaactcaccattctattatcaaagtcctctcctc 12258647  T
Q  211 caaggt 216  Q
    ||||||    
T  12258646 caaggt 12258641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 43625372 - 43625520
Alignment:
Q  68 aaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacc 167  Q
    |||||| |||||||||||| |  ||||||||   ||||||| ||| || | |||||||| ||| ||| |||| |||||  | ||||||||||  ||  |     
T  43625372 aaaagacagtgtcctttttcctctctcgcatgccgttctcaaccttcttatggctcttgagtttccaataatatccacattgttcttcttctcaaattct 43625471  T
Q  168 tccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    ||  |||||||||||||||| |||| ||||||||||||||| |||||||    
T  43625472 tctgcaaagtagttcaccattctatcatcaaagtcctctcctccaaggt 43625520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 12234691 - 12234789
Alignment:
Q  110 cctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    ||||||||||||| |||| || ||||| ||||||||| |||||||  | |||||| | |   ||| |||||| ||||| || |||||||||||||||||    
T  12234691 cctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagtttaccattctgttatcaaagtcctctcc 12234789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 12245510 - 12245466
Alignment:
Q  172 caaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    |||||||||| ||||| ||||||||||| |||||||| |||||||    
T  12245510 caaagtagtttaccattctattatcaaaatcctctcctccaaggt 12245466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 28219825 - 28220018
Alignment:
Q  15 aagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcc 114  Q
    ||||| ||| |||| |||||||| | ||||| |||||| || | | |||||| |||||| ||||||||||||||  ||| |||    ||||||| |||||    
T  28219825 aagaaatcaatgccttcaaataaagaatctacctcaatggtggcgacaacagcaaaagatagtgtcctttttgctctcttgcacgctgttctcaacctcc 28219924  T
Q  115 tcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    | |||||||||| ||| ||| ||||||||||  | ||||||||||| ||| ||||  | |||||||||||||||||| ||||||||||||||||    
T  28219925 ttaaggctcttgagtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctactatcaaagtcctctcc 28220018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 4678765 - 4678618
Alignment:
Q  69 aaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacct 168  Q
    |||||||||||||| |||||| |||||||    ||||||| |||||| |||| | ||| ||||  ||||||||||||  | |||||||| |||||| |||    
T  4678765 aaagagagtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattcttctttttgaactcct 4678666  T
Q  169 ccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    | ||||||||||||||||| || |||||||||||||||||||| ||||    
T  4678665 ctacaaagtagttcaccattctgttatcaaagtcctctccacctaggt 4678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 15594967 - 15595142
Alignment:
Q  41 atctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatg 140  Q
    ||||| |||||| |||||| ||  || ||||||||||  |||||||||| | |||||    |||||||  ||||||||||| |||||||||||| ||||     
T  15594967 atctacctcaatggtagtgacagtagtaaaagagagtaccctttttgccctttcgcacgcagttctcaatctcctcaaggcccttgggttcccagtaata 15595066  T
Q  141 tccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
    |||||| | |||||| |||||||  ||| | |||||||||| ||||| || ||||||||||||||||| |||||||    
T  15595067 tccactttgttcttcgtcttgaattcctgcgcaaagtagttgaccattctgttatcaaagtcctctcctccaaggt 15595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 35132454 - 35132551
Alignment:
Q  114 ctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccacc 211  Q
    ||||||||| |||  |||||||||||||| ||| | |||||  |||||||| | |  ||||||||||||||||| || ||||||||||||||||||||    
T  35132454 ctcaaggcttttgaattcccactaatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctccacc 35132551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 9336135 - 9335951
Alignment:
Q  32 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 131  Q
    |||||| ||||||| ||||| ||| ||  ||| || |||||| ||| ||||||||||| |||| ||    ||||||| |||||| |||| | ||||||||    
T  9336135 aaataaagcatctacctcaacagtggtaacaaaagcaaaagacagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttc 9336036  T
Q  132 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggt 216  Q
        | ||||||||| | |||||||| || ||| | |||||||| ||||| ||||| || |||||||||||||| || |||||||    
T  9336035 tgcttgatgtccactttattcttcttttttaactcttccacaaaatagttaaccattctgttatcaaagtcctcgcctccaaggt 9335951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 30775216 - 30775352
Alignment:
Q  72 gagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctcca 171  Q
    |||||||||||||||||||| || |||   ||||||| |   ||||| |||||||| |||||  ||||||||||  | |||||| |||| ||  |||| |    
T  30775216 gagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattcctcta 30775315  T
Q  172 caaagtagttcaccatcctattatcaaagtcctctcc 208  Q
    ||||||| |||| ||| || |||||||||||||||||    
T  30775316 caaagtaattcaacattctgttatcaaagtcctctcc 30775352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University