View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7731_low_15 (Length: 217)

Name: NF7731_low_15
Description: NF7731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7731_low_15
NF7731_low_15
[»] chr6 (3 HSPs)
chr6 (17-206)||(28934908-28935097)
chr6 (110-167)||(10579881-10579938)
chr6 (110-151)||(6415880-6415921)
[»] chr4 (12 HSPs)
chr4 (110-181)||(12121601-12121672)
chr4 (110-181)||(553363-553434)
chr4 (110-160)||(1489505-1489555)
chr4 (110-160)||(1508147-1508197)
chr4 (110-181)||(55505249-55505320)
chr4 (110-160)||(644736-644786)
chr4 (110-160)||(1513548-1513598)
chr4 (110-160)||(1537911-1537961)
chr4 (110-144)||(8184174-8184208)
chr4 (110-159)||(546819-546868)
chr4 (17-58)||(553486-553527)
chr4 (110-178)||(1552914-1552982)
[»] chr3 (1 HSPs)
chr3 (110-189)||(51113925-51114004)
[»] chr2 (1 HSPs)
chr2 (110-160)||(45245229-45245279)
[»] chr8 (1 HSPs)
chr8 (110-154)||(44736446-44736490)
[»] chr5 (2 HSPs)
chr5 (110-169)||(37937783-37937842)
chr5 (110-169)||(38267700-38267759)
[»] chr1 (2 HSPs)
chr1 (110-144)||(9580990-9581024)
chr1 (112-154)||(43634090-43634132)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 28935097 - 28934908
Alignment:
Q  17 agagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttatgcgcctgttgctgttaaactgcgatcgtgttacnnnnnnnggagtga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||    
T  28935097 agagttgacgatgaagcactcagtgtgatttcaaagagttgtcatggacttatgcgcctgttgctgttaaactgcgatagtgttacaaaaaaaggagtga 28934998  T
Q  117 agcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttcgtaacctcactagtat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  28934997 agcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttggtagcctcactagtat 28934908  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 10579881 - 10579938
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgatt 167  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| || ||||||||||    
T  10579881 ggagttaaacatgtggtagaaaactgcacacaacttagagagatttacttggatgatt 10579938  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 6415921 - 6415880
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagag 151  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  6415921 ggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 12121601 - 12121672
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 181  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| |  ||||| || ||||||||    
T  12121601 ggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcat 12121672  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 553434 - 553363
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 181  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||| ||||||  | ||||| ||||||||||    
T  553434 ggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcat 553363  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 1489505 - 1489555
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 160  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  1489505 ggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttg 1489555  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 1508147 - 1508197
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 160  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  1508147 ggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttg 1508197  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 55505249 - 55505320
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcat 181  Q
    |||||||| || ||| ||||||| ||||||||||||||||||||| | ||| | | ||||| ||||||||||    
T  55505249 ggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcat 55505320  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 644786 - 644736
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 160  Q
    |||||||| |||||||| ||||| ||||||||||| ||||||||| |||||    
T  644786 ggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttg 644736  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 1513548 - 1513598
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 160  Q
    |||||||||| |||| ||||||| ||||||||||| ||||||||| |||||    
T  1513548 ggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttg 1513598  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 1537911 - 1537961
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 160  Q
    ||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||    
T  1537911 ggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttg 1537961  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 8184174 - 8184208
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaact 144  Q
    ||||||||||||||| |||||||||||||||||||    
T  8184174 ggagtgaagcatgtgctagaaaattgcacacaact 8184208  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 546868 - 546819
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctattt 159  Q
    |||||||| |||||| ||||||| |||||| |||||||||||||| ||||    
T  546868 ggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 553527 - 553486
Alignment:
Q  17 agagttgacgatgaagcactcagtgtgatttcaaagagttgt 58  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  553527 agagttgatgatgaagcacttaatgtgatttcaaagagttgt 553486  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 1552914 - 1552982
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtg 178  Q
    |||||||||||||| | ||||||||||   ||||||||||||||| ||||| | | |||| ||||||||    
T  1552914 ggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtg 1552982  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 51113925 - 51114004
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaattt 189  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  ||||  | | |||| ||||||||||| |||||||    
T  51113925 ggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattt 51114004  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 45245229 - 45245279
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 160  Q
    |||||||| |||||||||||||||||||||||||| | ||||||| |||||    
T  45245229 ggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 44736490 - 44736446
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatc 154  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  44736490 ggagtgaaacatgttgtagaaaattgtacacaactaagagagatc 44736446  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 37937842 - 37937783
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 169  Q
    ||||||| |||||||||  ||||||||||  |||| ||||||||| ||||||||||||||    
T  37937842 ggagtgatgcatgtggtcaaaaattgcaccaaactcagagagatcaatttggatgattgt 37937783  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 38267700 - 38267759
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgt 169  Q
    ||||||| |||||||||  |||| |||||| |||| ||||||||| ||||||||||||||    
T  38267700 ggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaatttggatgattgt 38267759  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 9581024 - 9580990
Alignment:
Q  110 ggagtgaagcatgtggtagaaaattgcacacaact 144  Q
    |||||||||| ||||||||||||||||||||||||    
T  9581024 ggagtgaagcgtgtggtagaaaattgcacacaact 9580990  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 43634132 - 43634090
Alignment:
Q  112 agtgaagcatgtggtagaaaattgcacacaactaagagagatc 154  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||    
T  43634132 agtgaagcacgtgttagaaaattgcagacaactaagagagatc 43634090  T

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