View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7731_low_2 (Length: 520)
Name: NF7731_low_2
Description: NF7731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7731_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 24203904 - 24204407
Alignment:
| Q |
1 |
ttatttgaactgagcagatcgaacacattatatcaaacactaattgcactcaagatgaaaaacaccttgcagccgccttagagttttcccggtgggaatt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24203904 |
ttatttgaactgagcagatcgaacgcattatatcaaacactaaatgcactcaagatgaaaaacaccttgcagccgccttagagttttcccggtgggaatt |
24204003 |
T |
|
| Q |
101 |
ggctgatgctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaaggatttggatagtgaaaggtatttttctcttagtcattcgatc |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
24204004 |
gtctgatgctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaaggatttggatagcaaaaggtatttttctcttagtcagtcgatc |
24204103 |
T |
|
| Q |
201 |
aagtctggatccagaacaaatttttaaacagaaatattcacatcagggttcaaacacgagatgtgattgataatatgattgacttttaaaaatgattatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24204104 |
aagtctggatccagaacaaatttttaaacagaaatattcacatcagggttcaaacacgagatgtgattgataatatgattgactttgaaaaatgattatc |
24204203 |
T |
|
| Q |
301 |
tcgtatgaaatgccctctcaattggctcaacacatactcatccaattatgtcatgcaggagttcacagaagaagctggaggaagaactaatggacgtgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24204204 |
tcgtatgaaatgccctctcaattggctcaacacatactcatccaattatgtcatgcaggagttcacagaagaagctggaggaagaactaatgaacgtgaa |
24204303 |
T |
|
| Q |
401 |
caaccaaattgctgagctgaattctgaaactggagaaaccgtagtacagcaacttgaagaagaagaagaaataagagtttgcaaaaacatgatcaagtgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24204304 |
caaccaaattgctgagctgaattctgaaactggagaaaccgtagtacagcaacttgaagaagaagaagaaataagagtttgcaaaaacatgatcaagtgt |
24204403 |
T |
|
| Q |
501 |
actg |
504 |
Q |
| |
|
|||| |
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|
| T |
24204404 |
actg |
24204407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 279 - 504
Target Start/End: Complemental strand, 29404515 - 29404296
Alignment:
| Q |
279 |
ttgacttttaaaaatgattatctcgtatgaaatgccctctcaattggctcaacacatactcatccaattatgtcatgcaggagttcacagaagaagctgg |
378 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |
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| T |
29404515 |
ttgactttggaaaatgattatctcgaatgaaatgccctctaagttggctcaacacatgctcatccaattatgtcatgcaggagttcacggaagaagcttg |
29404416 |
T |
|
| Q |
379 |
aggaagaactaatggacgtgaacaaccaaattgctgagctgaattctgaaactggagaaaccgtagtacagcaacttgaagaagaagaagaaataagagt |
478 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||| || |||| | |||||| |||||| ||||||||||||||||| |
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| T |
29404415 |
aggaagaactaatgcaagtgaacaaccaaattgctgagctgaattctgaaggcagaaaaactgcagtacaacaactt------gaagaagaaataagagt |
29404322 |
T |
|
| Q |
479 |
ttgcaaaaacatgatcaagtgtactg |
504 |
Q |
| |
|
||| || ||||||||||||||||||| |
|
|
| T |
29404321 |
ttgtaagaacatgatcaagtgtactg |
29404296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29405316 - 29405157
Alignment:
| Q |
1 |
ttatttgaactgagcagatcgaacacattatatcaaa---cactaattgcactcaagatgaaaaacaccttgcagccgccttagagttttcccggtggga |
97 |
Q |
| |
|
|||||||||||||||||||| || |||| ||||| | | |||| || |||||||| |||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
29405316 |
ttatttgaactgagcagatcaaattcattctatcagaagccgctaaatgtactcaagaagaaaaacaccttgcagccgccttagagtttgccaggtggga |
29405217 |
T |
|
| Q |
98 |
attggctgatgctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaa |
157 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
29405216 |
attggctgatgctgagaaggagttgaagttgctcaagtctgttgcttcagcttcagagaa |
29405157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 29405116 - 29405020
Alignment:
| Q |
156 |
aaggatttggatagtgaaaggtatttttctct--tagtcattcgatcaagtctggatccagaacaaatttttaaacagaaatattcacatcagggtt |
250 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||||||| ||||||| |||| ||||| ||||||||| |||| |||||||||||||||| |
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| T |
29405116 |
aaggaattggacagtgaaaggtatttttctctcttagtcattcaatcaagttatgatcgggaacatatttttaaatagaagtattcacatcagggtt |
29405020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 289 - 504
Target Start/End: Complemental strand, 36658715 - 36658509
Alignment:
| Q |
289 |
aaaatgattatctcgtatgaaatgccctctcaattggctcaacacatactcatccaattatgtcatgcaggagttcacagaagaagctggaggaagaact |
388 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||||||| | |||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
36658715 |
aaaatgattgtctc--atgaaatgccctctcaatcggctcaa-atatactcatacaattatatcatgcaggagttcacggaagaagcttgaggaagaact |
36658619 |
T |
|
| Q |
389 |
aatggacgtgaacaaccaaattgctgagctgaattctgaaactggagaaaccgtagtacagcaacttgaagaagaagaagaaataagagtttgcaaaaac |
488 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||||||| | | |||| | |||||| |||||| ||||||||||| ||||||||||||||| |
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| T |
36658618 |
aatggaagtgaataaccaaattactgagctgaattctgatgccaaaaaaactgcagtacaacaactt------gaagaagaaatcagagtttgcaaaaac |
36658525 |
T |
|
| Q |
489 |
atgatcaagtgtactg |
504 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
36658524 |
atgatcaagtgtactg |
36658509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 36659625 - 36659466
Alignment:
| Q |
1 |
ttatttgaactgagcagatcgaacacattatatcaaacact---aattgcactcaagatgaaaaacaccttgcagccgccttagagttttcccggtggga |
97 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| | || || || ||||| |||||||||||||| |||||||||||||||||| || ||||||| |
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|
| T |
36659625 |
ttatttgaactgagcagatcaaacacattctatcagaagctgctaaatgtactcacgatgaaaaacacctcgcagccgccttagagtttgccaggtggga |
36659526 |
T |
|
| Q |
98 |
attggctgatgctgagaaggagttgaaattgctcatgtctgttgcttcagcttcagagaa |
157 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
36659525 |
attggcagatgctgagaaggagttgaagttgctcaagtctgttgcttcagcttcagagaa |
36659466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 36659425 - 36659350
Alignment:
| Q |
156 |
aaggatttggatagtgaaaggtatttttctct--tagtcattcgatcaagtctggatccagaacaaatttttaaac |
229 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
36659425 |
aaggaattggatagtgaaaggtatttttctctcttaatcattcaatcaagtctggatccggaacagatttttaaac |
36659350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 289 - 428
Target Start/End: Complemental strand, 26943444 - 26943306
Alignment:
| Q |
289 |
aaaatgattatctcgtatgaaatgccctctcaattggctcaacacatactcatccaattatgtcatgcaggagttcacagaagaagctggaggaagaact |
388 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||| ||||||| |||| |||||| |||||||||||||||||||||| |||||||| | ||||||| | |
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|
| T |
26943444 |
aaaatgattttctcatatgaaataccctctcaatcggctcaa-acatgctcatcatattatgtcatgcaggagttcacgaaagaagcttgcggaagaatt |
26943346 |
T |
|
| Q |
389 |
aatggacgtgaacaaccaaattgctgagctgaattctgaa |
428 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
26943345 |
aatggaagtgaataaccaaattgctgagctgaattctgaa |
26943306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 26955053 - 26955162
Alignment:
| Q |
48 |
actcaagatgaaaaacaccttgcagccgccttagagttttcccggtgggaattggctgatgctgagaaggagttgaaattgctcatgtctgttgcttcag |
147 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
26955053 |
actcaagatgaaaaacacctcgcaaccgccttagagttttccatgtgggaattggaggatactgagaaggagttgaagttgctcaagtctgttgcttcag |
26955152 |
T |
|
| Q |
148 |
cttcagagaa |
157 |
Q |
| |
|
|||||||||| |
|
|
| T |
26955153 |
cttcagagaa |
26955162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 289 - 428
Target Start/End: Original strand, 26960494 - 26960632
Alignment:
| Q |
289 |
aaaatgattatctcgtatgaaatgccctctcaattggctcaacacatactcatccaattatgtcatgcaggagttcacagaagaagctggaggaagaact |
388 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||| ||||||| |||| |||||| |||||||||||||||||||||| ||||||||| ||||||||| | |
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|
| T |
26960494 |
aaaatgattttctcatatgaaacaccctctcaatcggctcaa-acatgctcatcatattatgtcatgcaggagttcacggaagaagcttgaggaagaatt |
26960592 |
T |
|
| Q |
389 |
aatggacgtgaacaaccaaattgctgagctgaattctgaa |
428 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||||||| |||| |
|
|
| T |
26960593 |
aatggaagtgaataatcaaattgttgagctgaattatgaa |
26960632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 26955209 - 26955279
Alignment:
| Q |
162 |
ttggatagtgaaaggtatttttctc--ttagtcattcgatcaagtctggatccagaacaaatttttaaaca |
230 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||||||||||||| || || ||||||||||| |
|
|
| T |
26955209 |
ttggatagtgaaagttatttttctctcttagtcattcaatcaagtctggatccggagcagatttttaaaca |
26955279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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