View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7731_low_3 (Length: 508)
Name: NF7731_low_3
Description: NF7731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7731_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 12923735 - 12923279
Alignment:
| Q |
18 |
acatcagtgatgagtctaactgactttgccaggtcatcactactctaacagattaaggtaactcagtaatacagttctagttagactaattgaggtattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12923735 |
acatcagtgatgagtctaactgactttgccaggtcagcactactctaacagattaaggtaactcagtaatacagttctagttagactaactgaggtattt |
12923636 |
T |
|
| Q |
118 |
gccatgtatatatacaatgatatttaggatgtataggcctgaaacacaaaatttacccagctctttaaaccatcattttaaattcctacctagatgacta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12923635 |
gccatgtatatatacaatgatatttaggatgtataggcctgaaacacaaaatttacccagctctttaaaccatcattttaaattcctacctagatgacta |
12923536 |
T |
|
| Q |
218 |
gattttgacaccaaaggtgttcttcaattaagggacaacctcactcaatctaaagaagatatgcacagacagaccaaaacattttttataatttgttata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12923535 |
gattttgacaccaaaggtgttcttcaattaagggacaacctcactcaatctaaagaagatatgcacagacagaccaaaacatttttaataatttgttata |
12923436 |
T |
|
| Q |
318 |
taatcattgagatctttagcctggannnnnnnnccaaatatgggagcnnnnnnngaaacaagtaggcaagacagatgcgatcaagaagctgattattttt |
417 |
Q |
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| T |
12923435 |
taatcatggagatctttagcctgga-ttcttttccaaatatgggagcaaaaaaagaaacaagtaggcaagacagatgcaatcaagaagctgattattttt |
12923337 |
T |
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| Q |
418 |
tataaagatagtttgtggtagtgatcaattgtgagttgtgatgctgatcacctattca |
475 |
Q |
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| T |
12923336 |
tataaagatagtttgtggtagtgatcaattgtgagttgtaatgctgatcacctattca |
12923279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 30791930 - 30792009
Alignment:
| Q |
18 |
acatcagtgatgagtctaactgactttgccaggtcatcactactctaacagattaaggt-aactcagtaatacagttcta |
96 |
Q |
| |
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||||||| |||||||| |||||| ||||| | ||| ||||||||||||||||||| || |||||||||| ||| ||||| |
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| T |
30791930 |
acatcagcaatgagtctgactgacattgccggctcagcactactctaacagattaatgtaaactcagtaacacaattcta |
30792009 |
T |
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