View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7731_low_5 (Length: 399)
Name: NF7731_low_5
Description: NF7731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7731_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 154 - 377
Target Start/End: Original strand, 7564329 - 7564552
Alignment:
| Q |
154 |
atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca |
253 |
Q |
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| T |
7564329 |
atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca |
7564428 |
T |
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| Q |
254 |
gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatag |
353 |
Q |
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| T |
7564429 |
gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatag |
7564528 |
T |
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| Q |
354 |
caaagcgtgtaggtcaaggtgata |
377 |
Q |
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| T |
7564529 |
caaagcgtgtaggtcaaggtgata |
7564552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 7564238 - 7564330
Alignment:
| Q |
16 |
gtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataaccacctctcattaattagcaagataaaggttaatagtatcaat |
108 |
Q |
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| T |
7564238 |
gtgtttgtgcttcatagcaagaaaaagcaggagcataagcataagcataaccacctctcattaagtagcaagataaaggttaatagtatcaat |
7564330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 176668 - 176616
Alignment:
| Q |
329 |
ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgag |
381 |
Q |
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| T |
176668 |
ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgag |
176616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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