View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7731_low_8 (Length: 359)
Name: NF7731_low_8
Description: NF7731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7731_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 24848424 - 24848080
Alignment:
| Q |
1 |
ttttatggatatccacgatgtcttcgtggaaaaatgtgttcaaattcagttgaatagatagttaattgaaataacattaaaaatgatg-ttaatataatc |
99 |
Q |
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| T |
24848424 |
ttttatggatatccacaatgtcttcgtggaaaaatgtgttcaaattcagttgaatagatagttaattgaaataacagtaaaaatgatggttaatataatc |
24848325 |
T |
|
| Q |
100 |
-atgaagttgaattaaccataatttaaccgtaaattgaattaattatgtgtagattaaataatcttatcctacatgattttttatttgatgtgtcgattt |
198 |
Q |
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| T |
24848324 |
catgaagttgaattaaccataatttaaccgtaaattgaattaattatgtgtagattaaataatcttatcctacatgatttttgatttgatgtgtcgattt |
24848225 |
T |
|
| Q |
199 |
ccaggttaaattaaacaagtaaattagtccttagaaaccataatatgactttgttgctattggttggttgattagtcggcagatggtagttacttcattg |
298 |
Q |
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| T |
24848224 |
ccaggttaaattaaacaagtaaattagtccttagaaaccataatatgactttgttgctattggttggttgattagtcggcagatggtagttacttcatag |
24848125 |
T |
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| Q |
299 |
ttacacggttggtcttttctggtacaaagttttttcgtgttgttga |
344 |
Q |
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| T |
24848124 |
ttacacggttggtcttttctggtacaaagtttttt-gtgttgttga |
24848080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 230 - 344
Target Start/End: Original strand, 29883607 - 29883726
Alignment:
| Q |
230 |
tagaaaccataatatgactttgttgctattggttggttg------attagtcggcagatggtagttacttcattgttacacggttggtcttttctggtac |
323 |
Q |
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| T |
29883607 |
tagaaaccataacatgactttgttcatattggttggttggttttgattagtcggcagatggtagttacttcatagttacacggttggtcttttctggtac |
29883706 |
T |
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| Q |
324 |
aaagttttttcgtgttgttga |
344 |
Q |
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| T |
29883707 |
aaagtttttt-gtgttgttga |
29883726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 230 - 344
Target Start/End: Original strand, 29910763 - 29910882
Alignment:
| Q |
230 |
tagaaaccataatatgactttgttgctattggttggttg------attagtcggcagatggtagttacttcattgttacacggttggtcttttctggtac |
323 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29910763 |
tagaaaccataacatgactttgttcatattggttggttggttttgattagtcggcagatggtagttacttcatagttacacggttggtcttttctggtac |
29910862 |
T |
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| Q |
324 |
aaagttttttcgtgttgttga |
344 |
Q |
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|||||||||| |||||||||| |
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| T |
29910863 |
aaagtttttt-gtgttgttga |
29910882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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