View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7732_high_5 (Length: 444)
Name: NF7732_high_5
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 231 - 426
Target Start/End: Complemental strand, 5655808 - 5655613
Alignment:
| Q |
231 |
tctgtgatgttttcattggggttaacaggtggaggaggtgttcctttaagggttccaggaacttatcctagaagcatagggttcaactcaaatggttctg |
330 |
Q |
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| T |
5655808 |
tctgtgatgttttcattggggttaacaggtggaggaggtgttcctttaagggttccaggaacttatcctagaagcatagggttcaactcaaatggttctg |
5655709 |
T |
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| Q |
331 |
tgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaaatatgttagtcaataggtaacactaat |
426 |
Q |
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| T |
5655708 |
tgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaaatatgttagtcaataggtaacactaat |
5655613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 5656021 - 5655873
Alignment:
| Q |
18 |
cttcctggtccttttttggggaaccatgcatttccacaagaagcttattttgaaatcactatactgtattcttcttggaatggagattatgagttggtag |
117 |
Q |
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| T |
5656021 |
cttcctggtccttttttggggaaccatgcatttccacaagaagcttattttgaaatcactatactgtattcttcttggaatggagattatgagttggtag |
5655922 |
T |
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| Q |
118 |
gaagaagagaaggggagaagacaaaactactcattgaagatacttcaaa |
166 |
Q |
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| T |
5655921 |
gaagaagagaaggggagaagacaaaactactcattgaagatagttcaaa |
5655873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 47047944 - 47047996
Alignment:
| Q |
21 |
cctggtccttttttggggaaccatgcatttccacaagaagcttattttgaaat |
73 |
Q |
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| T |
47047944 |
cctggtcctgttttaggaaactatgtttttccacaagaagcttattttgaaat |
47047996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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