View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7732_high_6 (Length: 422)
Name: NF7732_high_6
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 33917852 - 33918249
Alignment:
| Q |
19 |
caaagaaatagcgttatcacaatttggattaaagagatgaaaaacatgtccttcaccttttgtctcaatcacttccacaacaccaccataaccaattttc |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33917852 |
caaagaaatagcgttatcgcaatttggattaaagagatgaaaaacatgtccttcaccttttgtctcaatcacttccacaacaccaccataaccaattttc |
33917951 |
T |
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| Q |
119 |
tcaagcaactccttataataccaacctctatccttcaacgaatcattctcagcaacacaaaccaaaactctcttacaacccaacctccccaaattcttat |
218 |
Q |
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| T |
33917952 |
tcaagcaactccttataataccaacctctatccttcaacgaatcattctcagcaacacaaaccaaaactctcttacaacccaacctccccaaattcttat |
33918051 |
T |
|
| Q |
219 |
ccttacccggattcaaaaacgggtcatcggatcccaaacttgttggacaaacaaacctccataaattatcagccaaagataagtgttcagatttctcagt |
318 |
Q |
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| T |
33918052 |
ccttacccggattcaaaaacgggtcatcggatcccgaacttgttggacaaacaaacctccataaattatcagccaaagataagtgttcagatttctcagt |
33918151 |
T |
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| Q |
319 |
agcctcagatccaaccctttcaacaccccaaaagaatgtatgaaccaaaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaa |
416 |
Q |
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| T |
33918152 |
agcctcagatccaaccctttcaacaccccaaaagaatgtatgaaccaaaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaa |
33918249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 33896383 - 33896569
Alignment:
| Q |
26 |
atagcgttatcacaatttggattaaagagatgaaaaacatgtccttcaccttttgtctcaatcacttccacaacaccaccataaccaattttctcaagca |
125 |
Q |
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||||| || |||||| |||| || || |||||||||| |||||| ||| | | | | |||| ||||| ||||||||||| ||||| |||||||||||| |
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| T |
33896383 |
atagcattctcacaacttggtttgaacagatgaaaaatatgtccctcatcctctatttcaacaacttcaacaacaccaccccaaccacttttctcaagca |
33896482 |
T |
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| Q |
126 |
actccttataataccaacctctatccttcaacgaatcattctcagcaacacaaaccaaaactctcttacaacccaacctccccaaat |
212 |
Q |
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| T |
33896483 |
attccttataatacaaacctctatccctcaaaatatctttcccagcaacacaaacaagcaatctcttacaacccaacttccccaaat |
33896569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 33902411 - 33902282
Alignment:
| Q |
83 |
tcaatcacttccacaacaccaccataaccaattttctcaagcaactccttataataccaacctctatccttcaacgaatcattctcagcaacacaaacca |
182 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||| | | |||||||||||| | |
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| T |
33902411 |
tcaatcacttcaacaacaccaccccaaccacttttctcaagcaattccttataataccaacccctatccttcaaaatatcttgcccagcaacacaaataa |
33902312 |
T |
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| Q |
183 |
aaactctcttacaacccaacctccccaaat |
212 |
Q |
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| T |
33902311 |
gcaatctcttacaacccaacttccccaaat |
33902282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 41 - 416
Target Start/End: Original strand, 19642351 - 19642726
Alignment:
| Q |
41 |
tttggattaaagagatgaaaaacatgtccttcaccttttgtctcaatcacttccacaacaccaccataaccaattttctcaagcaactccttataatacc |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
19642351 |
tttggattaaagagatgaaaaacatgtccttcaccttttgtctgaatcacatcaacaacaccatcataaccatttttctcaagcaactccttataatacc |
19642450 |
T |
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| Q |
141 |
aacctctatccttcaacgaatcattctcagcaacacaaaccaaaactctcttacaacccaacctccccaaattcttatccttacccggattcaaaaacgg |
240 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19642451 |
aacctctatccttcatcaaatcattctcagcaacacaaaccaaaacactcttacaacccaacctccccaaattcttatccttacccggattcaataacat |
19642550 |
T |
|
| Q |
241 |
gtcatcggatcccaaacttgttggacaaacaaacctccataaattatcagccaaagata---agtgttcagatttctcagtagcctcagatccaaccctt |
337 |
Q |
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|||||||| |||| ||||||||||||||||||| | |||||||||||| | ||||||| | ||||||| |||||| ||||||||||||||| ||| |
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| T |
19642551 |
gtcatcgggtcccgaacttgttggacaaacaaatcgccataaattatccacaaaagataaatattgttcaggtttctc---agcctcagatccaactctt |
19642647 |
T |
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| Q |
338 |
tcaacaccccaaaagaatgtatgaaccaaaacaatcccttcaaggttaatcccttgaagcccttgagttccaacacgaa |
416 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
19642648 |
tccacaccccaaaagaatgcatgaaccaaaacaatcccttcaatgttaatcccttgaagcccttcagttccaacacgaa |
19642726 |
T |
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