View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7732_low_1 (Length: 913)
Name: NF7732_low_1
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_1 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 688; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 1 - 897
Target Start/End: Original strand, 8921034 - 8921959
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagtgaat-----gatgagcattttgcaagaaccctag |
95 |
Q |
| |
|
||||| |||||||||| | ||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
8921034 |
ccgttcctttataactgtcgcttttacataatttttttgtttctaattaactgtcactttcaaagtgaatcagtggatgagtattttgcaagaaccctag |
8921133 |
T |
|
| Q |
96 |
caattgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtggtt |
195 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8921134 |
caattgcaaacaagatgtatgcacatggagaaagaaaggaaaaaaaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtggtt |
8921233 |
T |
|
| Q |
196 |
tgctacatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaa |
295 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
8921234 |
tgctccatagaagaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacacttcacaagaaaa |
8921333 |
T |
|
| Q |
296 |
aggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggttttactcatggtagaggaagaaatggagcaag------ |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8921334 |
aggaagaagaacaactcttgaaggtgtcaaattcaagaagaggaagagctggagatggtggttttactcatggtagaggaagaaatggagcaagtggaag |
8921433 |
T |
|
| Q |
390 |
------gggaaggggaagaggaagacaaagcaaagagatggtggaatactataagtgtcac------------tatcaaaatgagtgtcctatttgggaa |
471 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
8921434 |
gggaaggggaaggggaagatgaagacaaagcaaagagatggtggaatactataagtgtcacaagttgggacactatcaaaataagtgtcccacttgggaa |
8921533 |
T |
|
| Q |
472 |
gaaaatactaacaccggtgcaaaagatgaggtgtggttcttagattcaagatgcaacaatcatatgatagccaataaggaatggttgtttaattttaatg |
571 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8921534 |
gaaaatgctaacaccggtgcaaaagatgaggtgtggttcttagatttaggatgcaacaatcatatgatagccaataaggaatggttgtttaattttgatg |
8921633 |
T |
|
| Q |
572 |
agcaattttcgtgaatcaattaagcttggtgatgattcaaagttgtcagtcatgagaagagaaaatttgaagttgtgcataggtggaatgatacaggtga |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8921634 |
agcaattttcgtgaatcaattaagcttggtgatgattcaaagttgtcagtcatgagaagaggaaatttgaagttgtgcataggtggaatgatacaggtga |
8921733 |
T |
|
| Q |
672 |
tcaccgatgtgtattatcttccacgtttgaagaacaatttgttaagtataggtcaattgcagcagaagaatcttactactgtattttctgaagatagttg |
771 |
Q |
| |
|
||||||||||||||||| || || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
8921734 |
tcaccgatgtgtattatttttcaggtttgaggaacaatttgttgagtataggtcaattgcagcagaagaatcttactacattattttctaaagatagttg |
8921833 |
T |
|
| Q |
772 |
caaattctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgcagctgctgtgattcctatgtgtttg |
871 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8921834 |
caaattctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgcagctgttgtgattcctatgtgtttg |
8921933 |
T |
|
| Q |
872 |
aaaggtgcatgcacaagtgatacaaa |
897 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8921934 |
aaaggtgcatgcacaagtgatacaaa |
8921959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33071894 - 33071959
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
33071894 |
ccgttcctttataactgtcacttttacagaatttttttgtttctaattaactgtcactttcaaagt |
33071959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 3177938 - 3177983
Alignment:
| Q |
21 |
cttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
3177938 |
cttttacagaatttttttgtttctaattaactgtcactttcaaagt |
3177983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 9602128 - 9602083
Alignment:
| Q |
21 |
cttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
9602128 |
cttttacataatttttttgtttctaattaagtgtcactttcaaagt |
9602083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 9829699 - 9829654
Alignment:
| Q |
21 |
cttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
9829699 |
cttttacataatttttttgtttctaattaagtgtcactttcaaagt |
9829654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 387 - 897
Target Start/End: Complemental strand, 7622157 - 7621635
Alignment:
| Q |
387 |
aaggggaaggggaagaggaagacaaagcaaagagatggtggaatactataagtgtcac------------tatcaaaatgagtgtcctatttgggaagaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
7622157 |
aaggggaaggggaagaggaagacaaagaaaagagatggtggagtactataagtgtcacaagttgggacactatcaaaatgggtgtcctacttgggaagaa |
7622058 |
T |
|
| Q |
475 |
aatactaacaccggtgcaaaagatgaggtgtggttcttagattcaagatgcaacaatcatatgatagccaataaggaatggttgtttaattttaatgagc |
574 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7622057 |
aatgctaacaccggtgcaaaagataaggtgtggttcttagattcaggatgcaacaatcatatgatagccaataaggaatggttgtttaattttgatgagc |
7621958 |
T |
|
| Q |
575 |
aattttcgtgaatcaattaagcttggtgatgattcaaagttgtcagtcatgagaagagaaaatttgaagttgtgcataggtggaatgatacaggtgatca |
674 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7621957 |
aattttcgtgaatcaattaagcttagtgatgattcaaagttgtcagtcatgagaagaggaaatttgaagttgtgcataggtggaatgatacaggtgatca |
7621858 |
T |
|
| Q |
675 |
ccgatgtgtattatcttccacgtttgaagaacaatttgttaagtataggtcaattgcagcagaagaatcttactactgtattttctgaagatagttgcaa |
774 |
Q |
| |
|
|||||||||||||| || || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
7621857 |
ccgatgtgtattatatttcaggtttgaggaacaatttgttgagtataggtcaattgcagcagaagaatcttactacattattttctaaagatagttgcaa |
7621758 |
T |
|
| Q |
775 |
attctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgcagctgctgtgattcctatgtgtttgaaa |
874 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7621757 |
attctatcatgaaaataagggtctgattatgtctagtcagatgtcttctaacaggatgtatgtgatatatgcagctgctgtggttcctatgtgtttgaaa |
7621658 |
T |
|
| Q |
875 |
ggtgcatgcacaagtgatacaaa |
897 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7621657 |
ggtgcatgcacaagtgatacaaa |
7621635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 7627733 - 7627363
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataa-ttcttttgtttctaattaactgtcacattcaaagtgaatgatgagcattttgcaagaaccctagcaat |
99 |
Q |
| |
|
||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
7627733 |
ccgtttctttataactataacttttacataaatttttttgtttctaattaactgtcactttcaaagtgactgatgagtattttgcaagaaccctagcaat |
7627634 |
T |
|
| Q |
100 |
tgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtggtttgct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7627633 |
tgcaaacaagatgtctgcacatggagaaagaaaggaaaaacaactatggtggagaagattcttaggtccatgacttcaagattcaactatgtggtttgct |
7627534 |
T |
|
| Q |
200 |
acatagaagaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaagga |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7627533 |
ccatagaagaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttcaagaagcaagaatgacacttcacaagaaaaagga |
7627434 |
T |
|
| Q |
300 |
agaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggttttactcatggta |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7627433 |
agaagaacaactcttgaaggtgtcaaattcaagaagaggaagaactggagatggtggttttactcatggta |
7627363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38010019 - 38009954
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| |||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
38010019 |
ccgttcctttataactgtcacttttacataatttttttgtttccaattaactgtcactttcaaagt |
38009954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 6150712 - 6150750
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
6150712 |
ataatttttttgtttctaattaactgtcactttcaaagt |
6150750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34603615 - 34603680
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| | || | ||||||||||||||||||||||| |||||||| |
|
|
| T |
34603615 |
ccgttcctttataactgtcacttttacagaaattttttgtttctaattaactgtcactttcaaagt |
34603680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 151 - 280
Target Start/End: Complemental strand, 35372221 - 35372092
Alignment:
| Q |
151 |
gagaagattcttaggtccatgacttcaagattcaactatgtggtttgctac-atagaagaatccaatgacgttaccactttttccattaatgaactgcaa |
249 |
Q |
| |
|
||||||||| |||| |||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
35372221 |
gagaagatttttagatccatgacatcaagattcaactatgtggtgtg-tactatagaagaatctaatgatgttaccactctttctattgatgaactgcaa |
35372123 |
T |
|
| Q |
250 |
agcaattttcttgtccaagaagcaagaatga |
280 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
35372122 |
tgcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 18393193 - 18393155
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
18393193 |
ataatttttttgtttctaattaactgtcactttcaaagt |
18393155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 838318 - 838260
Alignment:
| Q |
8 |
tttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
838318 |
tttataactgtcgcttttatataatttttttgtttctaattaactgtcattttcaaagt |
838260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28226415 - 28226480
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | ||||||| |||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
28226415 |
ccgttcctttataactgtcgcttttacataaattttttgtttctaattaactgtcactttcaaagt |
28226480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24569538 - 24569603
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||||||||||| | | ||||||| |||||| |||||||||||||||| ||| || |||||||| |
|
|
| T |
24569538 |
ccgtttctttataattgtcgcttttacataatttttttgtttctaattaattgttactttcaaagt |
24569603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35077375 - 35077440
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35077375 |
ccgttcctttataactgtcacttttacagaatttttttgtttctaattaactgtcactttcaaagt |
35077440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 1201078 - 1201116
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1201078 |
ataatttttttgtttctaattaactgtcactttcaaagt |
1201116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47844096 - 47844031
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| |||| | |||| |||||||||||||||||| |||||||| |
|
|
| T |
47844096 |
ccgttcctttataactgtcacttttacataaattttttatttctaattaactgtcactttcaaagt |
47844031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6660941 - 6661006
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| |||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
6660941 |
ccgttcctttataactgtcacttttacataatttttttgtttctaattaagtgtcactttcaaagt |
6661006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6741343 - 6741408
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| |||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
6741343 |
ccgttcctttataactgtcacttttacataatttttttgtttctaattaagtgtcactttcaaagt |
6741408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13132368 - 13132303
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| | |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
13132368 |
ccgttcctttataactgtcacttttacagaatttttttgtttctaattaactgtcactttcaaagt |
13132303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 11163281 - 11163319
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
11163281 |
ataatttttttgtttctaattaactgtcactttcaaagt |
11163319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30205448 - 30205513
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| |||||| |||| ||||||||||| |||||| |||||||| |
|
|
| T |
30205448 |
ccgttcctttataactgtcacttttacataatttttttatttctaattaagtgtcactttcaaagt |
30205513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45317640 - 45317705
Alignment:
| Q |
1 |
ccgtttctttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||| |||||||||| | |||||| | |||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
45317640 |
ccgttcctttataactgtcacttttacagaatttttttgtttccaattaactgtcactttcaaagt |
45317705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 96287 - 96249
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
96287 |
ataatttttttgtttctaattaactgtcactttcaaagt |
96249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 252609 - 252647
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
252609 |
ataatttttttgtttctaattaactgtcactttcaaagt |
252647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 19811971 - 19812009
Alignment:
| Q |
28 |
ataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
19811971 |
ataatttttttgtttctaattaactgtcactttcaaagt |
19812009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 52825272 - 52825330
Alignment:
| Q |
8 |
tttataactatagcttttatataattcttttgtttctaattaactgtcacattcaaagt |
66 |
Q |
| |
|
||||||||| | | ||||| |||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
52825272 |
tttataactgtcgtttttacataatttttttgtttttaattaactgtcactttcaaagt |
52825330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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