View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7732_low_11 (Length: 261)
Name: NF7732_low_11
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2090102 - 2090350
Alignment:
| Q |
1 |
ttgatatattgaagaaaattgatagtcaaggtcgtccaaaggccagtcatagaggagaaaatgttaatatggccatgatcttggaaatgtacaatcttaa |
100 |
Q |
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| T |
2090102 |
ttgatatattgaagaaaattgatagtcaaggtcgtccaaaggccggtcatagaggagaaaatattaatatggccatgatcctgaaaatgtacaatcttga |
2090201 |
T |
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| Q |
101 |
agaaccaagattctgaagggtcatatgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttat |
200 |
Q |
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| T |
2090202 |
agaaccaagattctgaagggtcatataccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttat |
2090301 |
T |
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| Q |
201 |
aggattcatgacatagtagtggtagacaccacgcacaatattcctagct |
249 |
Q |
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| T |
2090302 |
aggattcatgacatagtagtggtagacaccacgcacaatattcctagct |
2090350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 2879210 - 2879001
Alignment:
| Q |
26 |
tcaaggtcgtccaaaggccagtcatagaggagaaaatgttaatatggccatgatcttggaaatgtacaatcttaaagaaccaagattctgaagggtcata |
125 |
Q |
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| T |
2879210 |
tcaatgtcgtccaattaccagtcacggaggagaaaatgttcacatgacgaagaccctgaaaacgcacaatcttgaaaaaccaagattctgcagggtcata |
2879111 |
T |
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| Q |
126 |
tgccagagcagcatatgaatttcctccaaaaaattgtccagaaggcttcaaaatagccacacattgttttcttataggattcatgacatagtagtggtag |
225 |
Q |
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| T |
2879110 |
tgccagagcagcatatgaatacccaccagaggtttgtcctatgggcttcataacagtcacacattgttttgtgactggattcaggacatagtaataatag |
2879011 |
T |
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| Q |
226 |
acaccacgca |
235 |
Q |
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| T |
2879010 |
acaccacgca |
2879001 |
T |
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