View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7732_low_13 (Length: 250)
Name: NF7732_low_13
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2090014 - 2089772
Alignment:
| Q |
1 |
agttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgataattgtcaaagggagataaatctaaaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2090014 |
agttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgtgtttttgataattgtcaaagggagataaatctaaaagat |
2089915 |
T |
|
| Q |
101 |
ggcaagatcttattggtctcatttagaggtgtaaattttgtttgttttgaactcgttgaatgtgttacaatgggtgttagctcttatacatggcacacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2089914 |
ggcaagatcttattggtctcatttagaggtgtaaattttgtttgttttgaactcgttgaatgtgttacaatgggtgttagctcttatacatggcacacaa |
2089815 |
T |
|
| Q |
201 |
ttcatcgaaaagtgaataggaagttgttgattcttaacaccaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2089814 |
ttcatcgaaaagtgaataggaagttgttgattcttaataccaa |
2089772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2879320 - 2879380
Alignment:
| Q |
1 |
agttgatcctcaagagaatgcctcgaatcaagctgagataataacacttcatcctgattgt |
61 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
2879320 |
agttgatcctcaggagaatgtttcggatcaagctgaggtaataacactacatcctggttgt |
2879380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University