View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7732_low_14 (Length: 245)

Name: NF7732_low_14
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7732_low_14
NF7732_low_14
[»] chr7 (13 HSPs)
chr7 (59-234)||(2944270-2944445)
chr7 (60-231)||(25501898-25502069)
chr7 (60-231)||(11039390-11039560)
chr7 (63-231)||(33189148-33189316)
chr7 (60-231)||(23809880-23810051)
chr7 (60-155)||(36298609-36298704)
chr7 (62-136)||(7766910-7766984)
chr7 (60-189)||(22519393-22519522)
chr7 (60-136)||(27336792-27336868)
chr7 (60-150)||(38440649-38440739)
chr7 (74-201)||(30541697-30541824)
chr7 (61-100)||(5972848-5972887)
chr7 (115-231)||(5972735-5972851)
[»] chr3 (11 HSPs)
chr3 (60-231)||(25874909-25875080)
chr3 (60-231)||(13825663-13825834)
chr3 (60-231)||(4127755-4127927)
chr3 (60-136)||(48251849-48251925)
chr3 (60-231)||(12148787-12148958)
chr3 (60-227)||(27926825-27926992)
chr3 (60-226)||(36584156-36584322)
chr3 (60-100)||(21287983-21288023)
chr3 (60-109)||(26187804-26187853)
chr3 (63-110)||(9176231-9176278)
chr3 (69-110)||(5295085-5295126)
[»] chr6 (10 HSPs)
chr6 (60-234)||(28581900-28582076)
chr6 (60-231)||(8576505-8576676)
chr6 (60-231)||(7622119-7622290)
chr6 (60-231)||(35167914-35168085)
chr6 (60-135)||(34435001-34435076)
chr6 (60-121)||(5999398-5999459)
chr6 (60-136)||(642257-642335)
chr6 (81-125)||(32292619-32292663)
chr6 (144-231)||(32292667-32292754)
chr6 (79-129)||(7245984-7246034)
[»] chr8 (8 HSPs)
chr8 (60-235)||(7987428-7987603)
chr8 (62-231)||(36583093-36583262)
chr8 (60-211)||(7968636-7968787)
chr8 (62-231)||(31005771-31005940)
chr8 (59-136)||(13355652-13355729)
chr8 (60-100)||(8227448-8227488)
chr8 (115-231)||(8227485-8227601)
chr8 (60-120)||(11481299-11481359)
[»] chr1 (15 HSPs)
chr1 (60-231)||(29678520-29678691)
chr1 (60-231)||(31585432-31585603)
chr1 (62-169)||(38264525-38264632)
chr1 (60-231)||(47140543-47140714)
chr1 (60-231)||(48379292-48379463)
chr1 (60-231)||(17562985-17563156)
chr1 (60-136)||(31292956-31293032)
chr1 (60-231)||(19884608-19884779)
chr1 (60-136)||(15378745-15378821)
chr1 (60-198)||(36728953-36729091)
chr1 (59-155)||(2191987-2192083)
chr1 (97-231)||(25294163-25294297)
chr1 (60-174)||(11894114-11894227)
chr1 (61-211)||(25987165-25987308)
chr1 (63-136)||(36344965-36345038)
[»] chr5 (10 HSPs)
chr5 (60-234)||(35188798-35188972)
chr5 (62-231)||(2209292-2209463)
chr5 (60-231)||(23428989-23429160)
chr5 (60-231)||(39800606-39800777)
chr5 (64-136)||(33742926-33742998)
chr5 (60-231)||(40056738-40056909)
chr5 (97-231)||(39207337-39207471)
chr5 (60-198)||(42836770-42836908)
chr5 (60-136)||(42879090-42879166)
chr5 (60-100)||(3926079-3926119)
[»] chr2 (10 HSPs)
chr2 (60-174)||(5704415-5704529)
chr2 (61-231)||(5938490-5938660)
chr2 (60-136)||(5110057-5110133)
chr2 (60-197)||(31576149-31576286)
chr2 (60-226)||(13626499-13626665)
chr2 (60-137)||(45458586-45458663)
chr2 (60-231)||(42625217-42625387)
chr2 (142-231)||(45151506-45151595)
chr2 (60-100)||(45151440-45151480)
chr2 (60-100)||(13807440-13807478)
[»] chr4 (12 HSPs)
chr4 (60-231)||(41039088-41039259)
chr4 (60-231)||(22278065-22278240)
chr4 (60-198)||(19841530-19841668)
chr4 (62-231)||(23626610-23626779)
chr4 (60-231)||(51356937-51357107)
chr4 (60-137)||(17120485-17120562)
chr4 (60-232)||(8819504-8819675)
chr4 (59-136)||(38951471-38951548)
chr4 (60-136)||(40572096-40572172)
chr4 (60-231)||(40715056-40715219)
chr4 (60-135)||(36465016-36465090)
chr4 (60-111)||(42555196-42555248)
[»] scaffold0115 (1 HSPs)
scaffold0115 (60-231)||(21819-21990)
[»] scaffold0057 (1 HSPs)
scaffold0057 (60-231)||(66352-66523)
[»] scaffold0691 (1 HSPs)
scaffold0691 (60-231)||(7672-7843)
[»] scaffold0155 (1 HSPs)
scaffold0155 (60-125)||(7094-7159)
[»] scaffold0246 (1 HSPs)
scaffold0246 (74-174)||(10735-10835)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 2944270 - 2944445
Alignment:
Q  59 attataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggta 158  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  2944270 attataaatattatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatctggacagatatgaatagggta 2944369  T
Q  159 cagttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatctct 234  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  2944370 cagttttcatacttatacaacagagcggacacggatatcacaccatccacatccatggatgtccatttacatctct 2944445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 25502069 - 25501898
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||| || ||  ||||||||||||||     
T  25502069 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaattcgtggattactagctaaacggatatctgcgcgtatatgaatagggtat 25501970  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    |  ||||||| ||||  ||| ||||  ||| |||||||| ||  || ||||  |||||| ||||||||||||    
T  25501969 aaatttcatatttatctaacggagcgaacatggatatcacactttcaacattcatggatatccatttacatc 25501898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 11039390 - 11039560
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||   |  | |||||| ||| |||||    
T  11039390 ttataaatgtcatccatggatatctgtataaacccgcagatacctcaaaattcgtgga-tacccgctgaacggatacccgcacggatatggatatggtac 11039488  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    |  ||||||| |||| |||| |||  |||||||||||||||  |||| |||| |||||| || |||||||||    
T  11039489 aaatttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatatctatttacatc 11039560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 33189316 - 33189148
Alignment:
Q  63 taaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacagt 162  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||  |||||||||||||||||||||||    || |||||  |||||| |||      
T  33189316 taaatgttatccatggatatctgtataaactcgtgaatacctcaaaatctatggattacccgctaaacggatatccatgcggatattgatagggcacata 33189217  T
Q  163 tttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    ||||||| ||||  ||| |||  ||||||||||||| || |||| |||| || ||| ||||||||||||    
T  33189216 tttcatatttatcaaacggagtggacacggatatcaaactatctgcatccatagatatccatttacatc 33189148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 23809880 - 23810051
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||  |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||     | |||||| |||||||||    
T  23809880 ttataaatgttatttatggatatctgtataaactcgcggatacctaaaaatccgtggattactcgctaaatggatatccccacggatatggatagggtac 23809979  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||  ||||||||||||  || |||  |||| |||||| ||||||||||||    
T  23809980 ggatttcatatttatctaacggagtggacacggatatcgcactatccgcatccatggatatccatttacatc 23810051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 36298704 - 36298609
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagg 155  Q
    |||||| |||||||||||||||||||||||||  | ||||||||||||||| ||| |||||||||||||| ||||||||| || ||||||||||||    
T  36298704 ttataagtgttatccatggatatctgtataaattcacggatacctcaaaattcgtagattacccgctaaatggatatttgcgcggatatgaatagg 36298609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 7766984 - 7766910
Alignment:
Q  62 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||||||| |||||||||||| |||| |||| |||||||| | ||||||||||||||||||||||    
T  7766984 ataaatgttatccatggaaatctgtataaacgcgcgaatacttcaaaatctgcggattacccgctaaacggatat 7766910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 22519393 - 22519522
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||| ||||||||||||| ||||||||||||  ||||||| ||||| ||||||||||| |||||| ||||||    || |||| | |||||||||    
T  22519393 ttataaatgatatccatggatatttgtataaacccgatgataccttaaaattcgtggattacctgctaaatggatatccacgcggatacggatagggtac 22519492  T
Q  160 agttttcatacttatacaacagagcagaca 189  Q
     | ||||||| |||| |||| |||||||||    
T  22519493 ggatttcataattatccaaccgagcagaca 22519522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 27336868 - 27336792
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||| ||||||    
T  27336868 ttatgaatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatat 27336792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 38440649 - 38440739
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatga 150  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||||||  | |||||| |||||| ||||||| | || |||||||    
T  38440649 ttataaatgttatctatggatatctgtataaacctgcagatacctcaaaatccacgaattacctgctaaatggatattcgcgcggatatga 38440739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 30541697 - 30541824
Alignment:
Q  74 catggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacagttttcatactta 173  Q
    |||||||||||||||||||| ||||||||||||||||||  ||| ||| || | || ||||||  | || |||||| ||||||||| | ||||||| | |    
T  30541697 catggatatctgtataaacctgcggatacctcaaaatccacggagtactcgttcaatggatatccgcgcggatatggatagggtacggatttcatattaa 30541796  T
Q  174 tacaacagagcagacacggatatcatac 201  Q
    | |||| |||| || ||| |||||||||    
T  30541797 tccaacggagcggatacgaatatcatac 30541824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 5972887 - 5972848
Alignment:
Q  61 tataaatgttatccatggatatctgtataaacccgcggat 100  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  5972887 tataaatgttatccatggatatttgtataaacccgcggat 5972848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 5972851 - 5972735
Alignment:
Q  115 ggattacccgctaaacggatatttgggcagatatgaatagggtacagttttcatacttatacaacagagcagacacggatatcataccatctacatctat 214  Q
    ||||||||||||||| ||||||  |  |  ||||| ||||||||| | ||||||| ||||  ||| |||||||||||||||||| || |||  |||  ||    
T  5972851 ggattacccgctaaatggatatccgcacgtatatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcattcat 5972752  T
Q  215 ggatgtccatttacatc 231  Q
    |||| ||||||||||||    
T  5972751 ggatatccatttacatc 5972735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 25874909 - 25875080
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||||||||    
T  25874909 ttataaacgttatccatggatatctgtataaacccacggatacctcaaaatccgcggattacccgctaaacggatatttgcgcggatatggatagggtac 25875008  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||  ||||  ||| |||| ||||||||||||| || ||| ||||| ||| || ||||||||||||    
T  25875009 ggatttcatctttatctaacggagcggacacggatatcacactatccacatccatgtatatccatttacatc 25875080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 13825834 - 13825663
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||||||||| || |||| |||||||||||  |||||||||||||| ||||||  | || |||||| |||||||||    
T  13825834 ttataaatgttatccatggatatctgtataaacctgcagatatctcaaaatccgcagattacccgctaaatggatatccgcgcggatatggatagggtac 13825735  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||| |||||  |||||| || |||  |||| |||||| ||||||||||||    
T  13825734 ggatttcatatttatctaacggagcggacacatatatcacactatccgcatccatggatatccatttacatc 13825663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 4127927 - 4127755
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaa-cggatatttgggcagatatgaatagggta 158  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||   ||||| || |   ||||| |||||||     
T  4127927 ttataaatgttatccatggatatatgtataaacccgcggatacctcaaaatctgtggattaccccctaaatttgatatatgcgtgaatatggatagggtt 4127828  T
Q  159 cagttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    | | ||||||| |||| |||| || | ||||||||||||| || |||  |||| |||||| ||||||||||||    
T  4127827 cggatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggatatccatttacatc 4127755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 48251849 - 48251925
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    ||||||||||||| ||||||||| |||||||||| |  ||||||||||||| ||||||||||| |||||||||||||    
T  48251849 ttataaatgttattcatggatatatgtataaaccagtagatacctcaaaattcgtggattacctgctaaacggatat 48251925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 12148958 - 12148787
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||| ||||||||||||||||||| |||||||  || |||||||||||||||| | ||||| |||||||| ||||||  |    |||||| |||||||||    
T  12148958 ttatgaatgttatccatggatatccgtataaattcgtggatacctcaaaatccattgattatccgctaaatggatatccgcatggatatggatagggtac 12148859  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||  ||||||||||||| || |||  |||| |||||| || |||||||||    
T  12148858 ggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatcgatttacatc 12148787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 27926825 - 27926992
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||| ||||||||||||||| ||||| || |||||||||  || |||||||| ||||||||||   | |  |||||  |||| ||||    
T  27926825 ttataaatgttatccatcgatatctgtataaactcgcgggtagctcaaaatctatgcattacccgttaaacggataaccgtgtcgatatagatagagtac 27926924  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccattta 227  Q
    |  ||||||| ||||  ||| |||| ||||||||||| | || ||||||||| ||| || ||||||||    
T  27926925 atatttcatatttatctaacggagcggacacggatatgacactatctacatccatgaatatccattta 27926992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 226
Target Start/End: Complemental strand, 36584322 - 36584156
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||| ||||| ||| ||||| ||||||||| |||  |||||||||||| ||||||||| ||| |||| ||||||  | || ||||||||||| | |     
T  36584322 ttataaaagttattcatagatatttgtataaactcgcaaatacctcaaaattcgtggattatccgttaaatggatatccgcgcggatatgaatagagcat 36584223  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccattt 226  Q
       ||||||| |||| |||  ||||||| || |||||||||| |||| |||| |||||| |||||||    
T  36584222 gaatttcatatttatccaatggagcagatacagatatcatactatctgcatccatggatatccattt 36584156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 21288023 - 21287983
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggat 100  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21288023 ttataaatgttatccatggatatctgtataaacccgcggat 21287983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 26187853 - 26187804
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaa 109  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  26187853 ttataaatattatccatgaatatctgtataaactcgcggatacctcaaaa 26187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 9176278 - 9176231
Alignment:
Q  63 taaatgttatccatggatatctgtataaacccgcggatacctcaaaat 110  Q
    |||||||||||||| |||||||||||| || || ||||||||||||||    
T  9176278 taaatgttatccatagatatctgtatatactcgtggatacctcaaaat 9176231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 5295126 - 5295085
Alignment:
Q  69 ttatccatggatatctgtataaacccgcggatacctcaaaat 110  Q
    |||| ||||||||||| |||||||||| ||||||||||||||    
T  5295126 ttattcatggatatctatataaacccgtggatacctcaaaat 5295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 28582076 - 28581900
Alignment:
Q  60 ttataaatgttatccatggatatctgtata--aacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggt 157  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||||||||||||  | || ||||||||||||||    
T  28582076 ttataaatgttatccatggatatctgtatataaacccgcggatacctctaaatatgtggattacccgctaaacggatatccgcgcggatatgaatagggt 28581977  T
Q  158 acagttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatctct 234  Q
    |  | ||||||| ||||  ||| ||||||||| |||||||| || ||| ||||| |||||| |||||||||||||||    
T  28581976 atggatttcatatttatctaacggagcagacatggatatcacactatccacatccatggatatccatttacatctct 28581900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 8576676 - 8576505
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||  | || |||||| |||| ||||    
T  8576676 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatcggcggattactcgctaaatggatatccgcgcggatatggatagagtac 8576577  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| || | ||||||||||||| || |||  |||| |||||| ||||||||||||    
T  8576576 ggatttcatatttatttaacggaacggacacggatatcacactatccgcatccatggatatccatttacatc 8576505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 7622290 - 7622119
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||| |||||||| ||||||    || |||||| ||| |||||    
T  7622290 ttataaatgttatccatgaatatctgtataaacccgcggataactcaaaatccacggattatccgctaaatggatatccacgcggatatggataaggtac 7622191  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    || ||||||| |||| |||| || | ||||| ||||||| || |||| ||||| ||||| ||||||||||||    
T  7622190 agatttcatatttattcaacggaacggacacagatatcacactatctgcatctgtggatatccatttacatc 7622119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 35167914 - 35168085
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||  |  | ||||||||||||||||    
T  35167914 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccacggattacccgcgaaacggatatccgcacggatatgaatagggtac 35168013  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||| ||| ||||  ||  |||  || ||||||||||||| ||   |||| |||||| ||||||||||||    
T  35168014 ggattttatatttatctaatggagtggatacggatatcatactattcgcatccatggatatccatttacatc 35168085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 34435001 - 34435076
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggata 135  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||  | |||||||||||||||||||    
T  34435001 ttataaatgttatccatggatatctgtataaaccaacggatacctcaaaatccacgaattacccgctaaacggata 34435076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 5999459 - 5999398
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattac 121  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5999459 ttataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcggattac 5999398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 642257 - 642335
Alignment:
Q  60 ttataaatgttatccatggatatctgtata--aacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||| |||||||| ||||||  || |  | |||||||||||||||| |||||||| |||||||||||||    
T  642257 ttataaatgttatcaatggatatatgtatataaatctacagatacctcaaaatccgcggattacctgctaaacggatat 642335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 32292619 - 32292663
Alignment:
Q  81 atctgtataaacccgcggatacctcaaaatccgtggattacccgc 125  Q
    |||||||||||| |||||||| |||||||||||||||||| ||||    
T  32292619 atctgtataaacacgcggatatctcaaaatccgtggattatccgc 32292663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 32292667 - 32292754
Alignment:
Q  144 gatatgaatagggtacagttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    |||||| ||||||||  | ||||||| |||| |||| |||| |||||||||||||||| |||  |||| || ||| ||||||||||||    
T  32292667 gatatggatagggtatggatttcatatttatccaacggagcggacacggatatcatactatccgcatccatcgatatccatttacatc 32292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 7245984 - 7246034
Alignment:
Q  79 atatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaa 129  Q
    |||||||| |||||| |||||||||| ||||| ||| ||||||||||||||    
T  7245984 atatctgtctaaacctgcggatacctaaaaattcgtagattacccgctaaa 7246034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 7987428 - 7987603
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||  |  | |||||| |||||||||    
T  7987428 ttataaatgttatccatggatatctgtataaacccgcagatacctcaaaatccgcagattacccgctaaacggatatccgcacggatatggatagggtac 7987527  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatctctg 235  Q
     | ||||||| |||| |||| |||| ||||| ||||||| |  |||| |||| |||||| ||||||||||| ||||    
T  7987528 ggatttcatatttatccaacggagcggacacagatatcacaatatctgcatccatggatatccatttacatatctg 7987603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 231
Target Start/End: Original strand, 36583093 - 36583262
Alignment:
Q  62 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacag 161  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||| |||||||||||  | || |||||||||||||||| |    
T  36583093 ataaatgttatccatggatatctatataaactcgctgatacctcaaaatctgtggattacccgttaaacggatatccgcgcggatatgaatagggtacgg 36583192  T
Q  162 ttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     ||||||| ||||  ||| || | |||||||||||||||| ||   |||| |||||| ||||||||||||    
T  36583193 atttcatatttatctaacggaacggacacggatatcatactatacgcatccatggatatccatttacatc 36583262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 7968636 - 7968787
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||| ||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |  | |||||| |||||||||    
T  7968636 ttataaatgtcatctatggatatatgtataaacccgtggatacctcaaaatccgcggattacccgctaaacggatatccgcacggatatggatagggtac 7968735  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatc 211  Q
     | ||||||| |||| |||| |||| ||||||||||||| || |||| ||||    
T  7968736 ggatttcatatttatccaacggagcggacacggatatcacactatctgcatc 7968787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 31005940 - 31005771
Alignment:
Q  62 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacag 161  Q
    ||||||||||||||| || |||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||  | ||  ||||| |||||| || |    
T  31005940 ataaatgttatccatagagatctttataaatccgcagatacctcaaaatccgtggattatccgctaaacggatatccgcgcgaatatggatagggcacgg 31005841  T
Q  162 ttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     ||||||| || | |||| |||| ||||||||||||| || |||| |||| |||||| | ||||||||||    
T  31005840 atttcatatttgtccaacggagcggacacggatatcacactatctgcatccatggatatacatttacatc 31005771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 13355729 - 13355652
Alignment:
Q  59 attataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||||  | ||||||||||||||||| |||||||||||||||||  |||||||| |||||||||||||    
T  13355729 attataaatgttatctttcgatatctgtataaacccacggatacctcaaaatccacggattacctgctaaacggatat 13355652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 8227448 - 8227488
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggat 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  8227448 ttataaatgttatccatggatatatgtataaacccacggat 8227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 8227485 - 8227601
Alignment:
Q  115 ggattacccgctaaacggatatttgggcagatatgaatagggtacagttttcatacttatacaacagagcagacacggatatcataccatctacatctat 214  Q
    ||||||||||||||| ||||||  |    |||||| |||| |||| | ||||||| ||||  ||| |||| ||||||||||||| || ||| ||||| ||    
T  8227485 ggattacccgctaaatggatatccgcatggatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccat 8227584  T
Q  215 ggatgtccatttacatc 231  Q
    |||| ||||||||||||    
T  8227585 ggatatccatttacatc 8227601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 11481359 - 11481299
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggatta 120  Q
    |||||||||||||||||| |||||||||||||||| |  ||| || |||||||| ||||||    
T  11481359 ttataaatgttatccatgaatatctgtataaacccacatatatctaaaaatccgcggatta 11481299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 29678520 - 29678691
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  |||||||||||  | || |||||| ||||||||     
T  29678520 ttataaatgttatccatggatatctgtataaacccgtggatacctcaaaatccgcggattacccattaaacggatatccgcgcggatatggatagggtat 29678619  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| |||| |||| |||| |||||  ||||||||| |||| |||| |||||| ||||||||||||    
T  29678620 ggatttcatatttatccaacggagcggacacatatatcatactatctgcatcaatggatatccatttacatc 29678691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 31585432 - 31585603
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||  | |  |||||| |||||||||    
T  31585432 ttataaatgttatccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatatccgcgttgatatggatagggtac 31585531  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||| ||| ||||  ||| |||| |||| |||||| | || |||  |||| |||||| ||||||||||||    
T  31585532 ggattttatatttatctaacggagcggacaaggatattacactatccgcatccatggatatccatttacatc 31585603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 38264525 - 38264632
Alignment:
Q  62 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacag 161  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| || || |||||| |||||| || |    
T  38264525 ataaatgttatccatggatatctgtataaacccgcggatacttcaaaattcgtggattaccggctaaacggatatctgcgcggatatggatagggcacgg 38264624  T
Q  162 ttttcata 169  Q
     |||||||    
T  38264625 atttcata 38264632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 47140714 - 47140543
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||  | || |||||  ||| | ||     
T  47140714 ttataaatgttatccatggatatctgtacaaacccgcggatacctcaaaatccgcggattacccgctaaacgaatatccgcgcggatatagataagatat 47140615  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| |||| |||| |||| |||||| |||||| || |||  |||| |||||| || |||||||||    
T  47140614 ggatttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggatatctatttacatc 47140543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 48379292 - 48379463
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||  |||||  |  | |||||| ||| |||||    
T  48379292 ttataaatgttatccatggatatctgtataaacccgcggatacctaaaaatccgcggattacctgctaaattgatatccgcacggatatggatatggtac 48379391  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||| ||||||||| ||| || |||  |||| |||||| ||||||||||||    
T  48379392 ggatttcatatttatctaacggagcggacacggatttcacactatccgcatccatggatatccatttacatc 48379463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 17562985 - 17563156
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |  | |  |||||| ||||||||     
T  17562985 ttataaatgttatccatgaatatctgtataaacccgcggatacttcaaaatctgcggattacccgctaaacggatgtccgcgttgatatggatagggtat 17563084  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||| ||| ||||  |||||||| ||||  ||||| | || |||  |||| |||||| ||||||||||||    
T  17563085 ggattttatatttatctaacagagcggacaaagatattacactatccgcatccatggatatccatttacatc 17563156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 31292956 - 31293032
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||| ||||||    
T  31292956 ttataaatgttatccatggatatctgtataaatccgcggatacctaaaaatccatggattatccgctaaatggatat 31293032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 19884608 - 19884779
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |||| | ||||| | || |||||  |||||| |     
T  19884608 ttataaatgttatccatggatatctatataaacccgcggatacctcaaaattcgtggattccccgttaaatgaatattcgtgcggatatagatagggcat 19884707  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
       ||||||| || | |||| |||| ||||| ||||||| || |||  |||| ||| || ||||||||||||    
T  19884708 gaatttcatatttgtccaacggagcggacacagatatcacactatccgcatccatgaatatccatttacatc 19884779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 15378821 - 15378745
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    ||||||||||||||||||||||| |||||||| |||  ||||||||||||||| |||||||||||||||| ||||||    
T  15378821 ttataaatgttatccatggatatttgtataaatccgttgatacctcaaaatccatggattacccgctaaatggatat 15378745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 198
Target Start/End: Original strand, 36728953 - 36729091
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| |||| ||||| |||| |||||||  |||||||||| ||| ||||||||||||||||||  |  | |||||  |||||||||    
T  36728953 ttataaatgttatccatgaatatttgtatgaacctgcggatatgtcaaaatccgcggactacccgctaaacggatatccgcacggatattgatagggtac 36729052  T
Q  160 agttttcatacttatacaacagagcagacacggatatca 198  Q
       ||||||| |||| |||| || | |||||||||||||    
T  36729053 gaatttcatatttatccaacggatcggacacggatatca 36729091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 2191987 - 2192083
Alignment:
Q  59 attataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagg 155  Q
    |||||||||  ||| ||||||||||||||||||| ||| |||||||||||||| |||||||| | |||||| |||| || | || |||||| |||||    
T  2191987 attataaatagtattcatggatatctgtataaactcgcagatacctcaaaatctgtggattatctgctaaatggatgttcgcgcggatatggatagg 2192083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 25294163 - 25294297
Alignment:
Q  97 ggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacagttttcatacttatacaacagagcagacacggatat 196  Q
    ||||| |||||||||| ||||||| |||||||| ||||||  |    |||||| ||||||||||| ||||||| ||||  ||| |||  |||||||||||    
T  25294163 ggatatctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtacagatttcatatttatctaacggagtggacacggatat 25294262  T
Q  197 cataccatctacatctatggatgtccatttacatc 231  Q
    || || |||  |||| |||||| ||||||||||||    
T  25294263 cacactatccgcatccatggatatccatttacatc 25294297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 11894227 - 11894114
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||| ||| |||| | ||||||| | |  ||| ||||||||| |||||||||||||||||| |||||  |  | |||||||||| |||||    
T  11894227 ttataaatgttatcaatgaatatatctataaacactcaaatatctcaaaatctgtggattacccgctaaacagatatccgtac-gatatgaatatggtac 11894129  T
Q  160 agttttcatacttat 174  Q
    || ||||||| ||||    
T  11894128 agatttcatatttat 11894114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 25987308 - 25987165
Alignment:
Q  61 tataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtaca 160  Q
    |||||||||||| ||||||||||| ||||||        ||||||||||||||  | ||||||| ||||||||||| || || |||||| ||| | ||||    
T  25987308 tataaatgttatacatggatatctatataaat-------tacctcaaaatccgcagtttacccgttaaacggatatctgtgcggatatggataagataca 25987216  T
Q  161 gttttcatacttatacaacagagcagacacggatatcataccatctacatc 211  Q
      ||||||||||||  ||| |||| |||||| |||||| || ||| |||||    
T  25987215 tatttcatacttatctaacggagcggacacgtatatcacactatccacatc 25987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 36344965 - 36345038
Alignment:
Q  63 taaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    ||||||||||||| ||| |||||| || ||||| ||||| |||| ||| ||||||| |||| || |||||||||    
T  36344965 taaatgttatccagggacatctgtgtatacccgtggatatctcagaattcgtggataacccacttaacggatat 36345038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 35188798 - 35188972
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||| |||||||| ||||||| |  | |||||  ||||| |||    
T  35188798 ttataaatgttatccatggatatttgtataaacctgcggatacctaaaaatccatggattatccgctaaatggatattcgcacggatatagataggatac 35188897  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatctct 234  Q
    || ||||||| ||||  ||| |||| |||||| |||||| || |||  |||| |||||| |||||||||||||||    
T  35188898 agatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggatatccatttacatctct 35188972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 2209463 - 2209292
Alignment:
Q  62 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacag 161  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||| |  | |||| ||||||  | |    
T  2209463 ataaatgttatccatggatatctgtataaacccgcatatacctcaaaatccatggattacccgctaaacggatatttgcgtgggtatggatagggcgcgg 2209364  T
Q  162 ttttcatacttatacaacagagcagacacggatatcataccatct--acatctatggatgtccatttacatc 231  Q
     ||| ||| || | ||||||| |  |||||||||||| || ||||  |||||||||||| | ||||||||||    
T  2209363 attttatatttgtccaacagaacgtacacggatatcacactatctacacatctatggatattcatttacatc 2209292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 23429160 - 23428989
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||  |  | |||||| |||||||||    
T  23429160 ttataaatgttatccatggatatatgtataaactcgcggatacctaaaaatccgtggattgcccgctaaatggatatccgcacggatatggatagggtac 23429061  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  | | ||||||||| |||||||| || |||  |||| ||| || || |||||||||    
T  23429060 ggatttcatatttatctatcggagcagacaaggatatcacactatccgcatccatgaatatctatttacatc 23428989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 39800606 - 39800777
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||| |||||| ||    |||||| |||||||||    
T  39800606 ttatgaatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatctgcatggatatggatagggtac 39800705  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||| ||| ||||  ||| |||  ||||||||||||| || |||  |||| |||||| ||||||||||||    
T  39800706 ggattttatatttatctaacggagtggacacggatatcacactatccgcatccatggatatccatttacatc 39800777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 33742926 - 33742998
Alignment:
Q  64 aaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||| ||||||    
T  33742926 aaatgttatccatggatatctgtataaacccgcatatacctcaaaatccacggattacccgctaaaaggatat 33742998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 40056909 - 40056738
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||| ||||||  |    |||||| |||||||||    
T  40056909 ttatgaatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatggatatccgcatggatatggatagggtac 40056810  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
       ||||||| ||||  ||| |||  || |||||||||| || |||  |||| |||||| ||||||||||||    
T  40056809 gaatttcatatttatctaacggagtggaaacggatatcacactatccgcatccatggatatccatttacatc 40056738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 39207337 - 39207471
Alignment:
Q  97 ggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacagttttcatacttatacaacagagcagacacggatat 196  Q
    ||||| ||||||||||| ||||||||||||||||||||||  |  | |||||| | ||||||| | ||||||| ||||  ||| ||||||||||||||||    
T  39207337 ggatatctcaaaatccgcggattacccgctaaacggatatccgcacggatatggaaagggtacggatttcatatttatctaacggagcagacacggatat 39207436  T
Q  197 cataccatctacatctatggatgtccatttacatc 231  Q
    || || |||  |||| |||||| ||||||||||||    
T  39207437 cacactatccgcatccatggatatccatttacatc 39207471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 42836908 - 42836770
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||| |||  |||||| ||| |||| |||||| ||  | |||||| ||| |||||    
T  42836908 ttataaatgttatccatgaatatctgtgtaaacccgcggatacctaaaactcctcggattatccgttaaatggatatctgcacggatatggatatggtac 42836809  T
Q  160 agttttcatacttatacaacagagcagacacggatatca 198  Q
    |  ||||||| ||||  ||| |||| ||||| |||||||    
T  42836808 atatttcatatttatctaacggagcggacacagatatca 42836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 42879090 - 42879166
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||||||| |||| |||||||||| ||| ||||||||| |||   ||||||||||||||||||||||    
T  42879090 ttataaatgttatccatgaatatatgtataaacctgcgaatacctcaacatctacggattacccgctaaacggatat 42879166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 3926119 - 3926079
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggat 100  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  3926119 ttataaatgttatccatggatatacgtataaacccgcggat 3926079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 5704529 - 5704415
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  | || |||||  |||| ||||    
T  5704529 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatcattggattacccgctaaacggatatccgcgcggatatagatagagtac 5704430  T
Q  160 agttttcatacttat 174  Q
    || ||||||| ||||    
T  5704429 agatttcatatttat 5704415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 5938660 - 5938490
Alignment:
Q  61 tataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtaca 160  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||    || |||||| |||||||||     
T  5938660 tataaatgttatccatggatatttgtataaacccgcagatacttcaaaatctgtggattacccgctaaacggatatccacgcggatatggatagggtacg 5938561  T
Q  161 gttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
      ||||||| ||||  ||| |||  ||||||||||||| || ||  ||||| |||||| ||||||||||||    
T  5938560 aatttcatatttatctaacggagtggacacggatatcacactattcacatccatggatatccatttacatc 5938490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 5110133 - 5110057
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5110133 ttataaatgttatccatggatatctgtaaaaatccgcggatacctcaaaatccgtggattacccgctaaacggatat 5110057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 31576149 - 31576286
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| ||||| || ||||||||||||||| ||||||     | |||||| |||||||||    
T  31576149 ttataaatgttatccatggatatctgtacaaacccacggatacctaaaaattcgcggattacccgctaaatggatatccacacggatatggatagggtac 31576248  T
Q  160 agttttcatacttatacaacagagcagacacggatatc 197  Q
    |  ||||||| ||||| ||  |||  ||||||||||||    
T  31576249 aaatttcatatttatataatggagtggacacggatatc 31576286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 13626499 - 13626665
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||  | ||||||||| ||||  ||||||  |  | |||||| |||||||||    
T  13626499 ttataaatgttatccatgaatatctgtataaacccgcggatatctcaaaatatgcggattaccctctaagaggatatccgcccggatatggatagggtac 13626598  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccattt 226  Q
     | ||||||| ||||  |||  | | |||||| |||||| || |||  ||||||||||| |||||||    
T  13626599 ggatttcatatttatctaacgaaacggacacgaatatcacactatccgcatctatggatatccattt 13626665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 45458586 - 45458663
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatt 137  Q
    ||||||||||||||||||||||||||||||||   | |||||| |||||||| ||||||||||||||||| |||||||    
T  45458586 ttataaatgttatccatggatatctgtataaatttgtggatacttcaaaatctgtggattacccgctaaatggatatt 45458663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 42625217 - 42625387
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||| | ||||  |    |||||| |||||||||    
T  42625217 ttatgaatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctaaatgaatatccgcatggatatggatagggtac 42625316  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||  ||||||||||||| ||  ||  |||| |||||| ||||||||||||    
T  42625317 ggatttcatatttatctaac-gagtggacacggatatcacactctccgcatccatggatatccatttacatc 42625387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 45151506 - 45151595
Alignment:
Q  142 cagatatgaatagggtacagttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    |||||||||||||| ||||| ||||||| ||||  |||||||| ||||||||||||| || |||  |||  |||||| ||||||||||||    
T  45151506 cagatatgaataggatacagatttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggatatccatttacatc 45151595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 45151440 - 45151480
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggat 100  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  45151440 ttataaatgttatccatagatatctgtataaacccgcggat 45151480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 13807478 - 13807440
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggat 100  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  13807478 ttataaatgttatccatgg--atctgtataaacccgcggat 13807440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 41039259 - 41039088
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||| ||||||  |  | |||||| ||| |||||    
T  41039259 ttataaatgttatccatggatatctgtataaatctgcggatacctaaaaatccgcggattacccgctaaatggatatccgcacggatatggatatggtac 41039160  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||| ||||||||||||| |  |||  |||| |||||| ||||||||||||    
T  41039159 ggatttcatatttatctaacggagcggacacggatatcacattatccgcatccatggatatccatttacatc 41039088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 22278240 - 22278065
Alignment:
Q  60 ttataaatgttatccatggatat-----ctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatag 154  Q
    |||||||||||||||||||||||     ||||||||||||||  |||||||||||||||||||| ||||| |||||||||||  |   ||||||  ||||    
T  22278240 ttataaatgttatccatggatatgatatctgtataaacccgcaaatacctcaaaatccgtggat-acccgataaacggatatccgcatagatattgatag 22278142  T
Q  155 ggtacagttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    ||||| | ||||||| |||| |||| || | |||||||||||||||  ||||||||| |||||| ||||||||||||    
T  22278141 ggtacggatttcatatttatccaacggaacggacacggatatcataatatctacatccatggatatccatttacatc 22278065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 19841668 - 19841530
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||||  |  |||||||  |||||||||    
T  19841668 ttataaatgttatccatgaatatctgtataaatccgcggatacctcaaaatcagcagattacccgctaaacggatatccgcacagatatcgatagggtac 19841569  T
Q  160 agttttcatacttatacaacagagcagacacggatatca 198  Q
     | ||||||| |||| | ||||||| ||||  |||||||    
T  19841568 ggatttcatatttatccgacagagcggacatagatatca 19841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 23626779 - 23626610
Alignment:
Q  62 ataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacag 161  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||||||||  |    ||||||||||| ||||      
T  23626779 ataaatgttatccatggatatatgtataaactcgcggatacctcaaaatctgtggattacctgctaaacggatatccgcatggatatgaatagtgtacga 23626680  T
Q  162 ttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     ||||||| |||| | || |||| |||||  |||||| || || | |||| |||||| ||||||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccatggatatccatttacatc 23626610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 51357107 - 51356937
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||  |||||  | |  |||||| |||||| ||    
T  51357107 ttataaatgttatccatggatatctgtataaacctgcgggta-ctcaaaattcgtggattacccgctaaattgatatccgtgtggatatggatagggcac 51357009  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    |  ||||||| || | |||| |||| ||||| ||||||| || |||  |||| |||||| ||||||||||||    
T  51357008 aaatttcatatttgtccaacggagcggacacagatatcacactatccgcatccatggatatccatttacatc 51356937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 17120485 - 17120562
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatt 137  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||| ||||||||  |||||||||||||||||||||||||    
T  17120485 ttataaatgttattcatagatatctatataaactcgcggatagctcaaaatttgtggattacccgctaaacggatatt 17120562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 232
Target Start/End: Original strand, 8819504 - 8819675
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||||||||||||| | ||||||||||||||| || ||||||||| ||||| |||||||||||||||||| ||||||  | || |||||| |||||| ||    
T  8819504 ttataaatgttatcta-ggatatctgtataaatccacggataccttaaaattcgtggattacccgctaaatggatatccgcgcggatatggatagggaac 8819602  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatct 232  Q
       ||||||| || | |||| |||  ||| || |||||| || |||  |||| |||||| |||||||||||||    
T  8819603 gaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggatatccatttacatct 8819675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 38951548 - 38951471
Alignment:
Q  59 attataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    ||||||||||||||||| |||||||| ||||||||||||  ||||||||||| ||  ||||| ||| |||||||||||    
T  38951548 attataaatgttatccacggatatctatataaacccgcgattacctcaaaattcgcagattatccgttaaacggatat 38951471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 40572096 - 40572172
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatat 136  Q
    |||| |||||||||||| |||||| ||||||| |||  ||||||||||||||| ||||||| |||||||| ||||||    
T  40572096 ttatgaatgttatccatagatatccgtataaatccgtagatacctcaaaatccatggattatccgctaaatggatat 40572172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 40715056 - 40715219
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||| ||||||||||||||||| ||||||||||  ||||||||| ||||||| || |||||| |||||||||||||  | |      || ||||||||     
T  40715056 ttatagatgttatccatggatatatgtataaacctacggataccttaaaatccatg-attacc-gctaaacggatatccgcg------tggatagggtat 40715147  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
       |||||||||||| |||| || |||||||| |||||| || |||| ||||  ||||| ||||||||||||    
T  40715148 gaatttcatacttattcaacggatcagacacgaatatcacactatctgcatccttggatatccatttacatc 40715219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 36465016 - 36465090
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggata 135  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||  | ||||||| |||||||||||||||| |||||    
T  36465016 ttataaatgttattcatgggtatctgtataaacccgcaggta-tttaaaatccatggattacccgctaaatggata 36465090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 42555248 - 42555196
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaa-cccgcggatacctcaaaatc 111  Q
    |||| ||||||||||||| ||||||||||||| |||||||||| |||||||||    
T  42555248 ttattaatgttatccatgaatatctgtataaaccccgcggatatctcaaaatc 42555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 21990 - 21819
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||| ||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||| | ||||||  |    |||||| |||||||||    
T  21990 ttatgaatgttatccatggatatccgtataaatccgtggatacctcaaaatccatggattatccgctatatggatatccgcatggatatggatagggtac 21891  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||  ||||||||||||| || |||  |||| |||||| ||||||||||||    
T  21890 ggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatccatttacatc 21819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 66523 - 66352
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    ||||||||  ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||   ||||| |  |||||||| ||||||  |    
T  66523 ttataaatagtatccatggatatctgtataatcccgcggatacctcaaaatccatgaattacccgctaaataaatattcgcacagatatggatagggctc 66424  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
    || ||||||| || | |||  |||| |||||  |||||| || |||  |||| |||||  ||||||||||||    
T  66423 agatttcatatttgtccaatggagctgacacaaatatcacactatccgcatccatggacatccatttacatc 66352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 7843 - 7672
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtac 159  Q
    |||| ||||||||||||||||||| |||||||  || |||||||||||||||| | ||||| |||||||| ||||||  |    |||||| |||||||||    
T  7843 ttatgaatgttatccatggatatccgtataaattcgtggatacctcaaaatccattgattatccgctaaatggatatccgcatggatatggatagggtac 7744  T
Q  160 agttttcatacttatacaacagagcagacacggatatcataccatctacatctatggatgtccatttacatc 231  Q
     | ||||||| ||||  ||| |||  ||||||||||||| || |||  |||| |||||| || |||||||||    
T  7743 ggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatatcgatttacatc 7672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 7094 - 7159
Alignment:
Q  60 ttataaatgttatccatggatatctgtataaacccgcggatacctcaaaatccgtggattacccgc 125  Q
    |||||||||||||||||||||||||||||||| ||| | |||||| |||||| | |||||||||||    
T  7094 ttataaatgttatccatggatatctgtataaatccgtgaatacctaaaaatctgcggattacccgc 7159  T

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Target: scaffold0246 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 10735 - 10835
Alignment:
Q  74 catggatatctgtataaacccgcggatacctcaaaatccgtggattacccgctaaacggatatttgggcagatatgaatagggtacagttttcatactta 173  Q
    |||||||||||||||||||||||  |||||   |||| | |||||||||||||||||||||||  | |  |||||||||||||||| | ||||||| |||    
T  10735 catggatatctgtataaacccgcaaataccatgaaatacatggattacccgctaaacggatatccgcgtggatatgaatagggtacggatttcatattta 10834  T
Q  174 t 174  Q
    |    
T  10835 t 10835  T

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