View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7732_low_18 (Length: 220)
Name: NF7732_low_18
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34327976 - 34328210
Alignment:
| Q |
1 |
tctcattaaagattggccatggctatgaattgtannnnnnnnagagagaatgatttgtattttcattgtgttgattctgaaaatgggtaatccttaaaaa |
100 |
Q |
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| T |
34327976 |
tctcattaaagattggccatggctatggattgtattttttttagagagaatgatttgtattttcattgtgttgattctgaaaatgggtaatcctaaaaaa |
34328075 |
T |
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| Q |
101 |
cataatgacttgaagtctatctctttgattagttgtgtata------------taaagtgttggtaaatagaggaaaatgggtcatgttatttcggaatt |
188 |
Q |
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| T |
34328076 |
cataatgacttgaagtctatctctttgattagctgtgtatataaagtgttagttaaagtgttggtaaatagacgaaaatgggtcatgttatttcggaatt |
34328175 |
T |
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| Q |
189 |
tcaatttgtatttgttaa---tagataaattttgg |
220 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
34328176 |
tcaatttgtatttgttaaatgtagataaattttgg |
34328210 |
T |
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