View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7732_low_2 (Length: 612)
Name: NF7732_low_2
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 4e-83; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 196 - 360
Target Start/End: Original strand, 11826397 - 11826561
Alignment:
| Q |
196 |
cattgatggtaacatctctttttgcctcccgaaaacttgcgaagttcatactcacaaggcgtaacatttctttgattatctgtatataaataaatacatt |
295 |
Q |
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| T |
11826397 |
cattgatggtaacatctctttttgcctcccgaaaacttgcgaagttcatactcacaaggcgtaacatttctttgattatctgtatataaataaatacatt |
11826496 |
T |
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| Q |
296 |
gcatttctttgatgtttttatttttaggaaatatactgaagttttaatgtaagcatatattaaca |
360 |
Q |
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| T |
11826497 |
gcatttctttgatgtttttatttttagaaaatatactgaagctttaatgtaagcatatattaaca |
11826561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 11826050 - 11826177
Alignment:
| Q |
18 |
aattatgcacttgaaacctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatttggatttactcgctcca |
117 |
Q |
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| T |
11826050 |
aattatgcacttgaaacctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatctggatttactcgatcaa |
11826149 |
T |
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| Q |
118 |
atctatacaaaatagataaattagtaat |
145 |
Q |
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| T |
11826150 |
gcctacacgaaatagataaattagtaat |
11826177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 11799271 - 11799383
Alignment:
| Q |
21 |
tatgcacttgaaacctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatttggatttactcgctccaatc |
120 |
Q |
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| T |
11799271 |
tatgcacttgaaacctttatcaccttggaaaggcaattgtctataggcttggataatggtaagcaagtaatagggcattctggatttactcgctccaacc |
11799370 |
T |
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| Q |
121 |
tatacaaaataga |
133 |
Q |
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| T |
11799371 |
tacataaaataga |
11799383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 11826584 - 11826633
Alignment:
| Q |
443 |
acttcaaagtgatgacacttcaagatctcaagccaacatcaccattgtat |
492 |
Q |
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| T |
11826584 |
acttcaaagtgaggacacttcaagatctcaagccaacatcaccattgtat |
11826633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 11815194 - 11815265
Alignment:
| Q |
35 |
ctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatttggatt |
106 |
Q |
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| T |
11815194 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattctggatt |
11815265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 11816278 - 11816361
Alignment:
| Q |
196 |
cattgatggtaacatctctttttgcctcccgaaaacttgcgaagttcatactcacaaggcgtaacatttctttgattatctgta |
279 |
Q |
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| T |
11816278 |
cattgatgttaacgtctatagttgcctcccgaaaaattgcgaagttgatgctgacaaggcgtaacacttcgttgattatctgta |
11816361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 11802199 - 11802288
Alignment:
| Q |
196 |
cattgatggtaacatctctttttgcctcccgaaaacttgcgaagttcatactcacaaggcgtaacatttctttgattatctgtatataaa |
285 |
Q |
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| T |
11802199 |
cattcatgttaacatctttagttgcctcccgaaaaagtgcgaaattcaaaccgacaacacgtaacatttcgttgattacctgtatataaa |
11802288 |
T |
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