View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7732_low_3 (Length: 596)
Name: NF7732_low_3
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Original strand, 47460935 - 47461465
Alignment:
| Q |
17 |
agatcttcttgttagagagcttgctaataagaataaatggaaaaggtgtccaagatgcaggttctatgttgagaaaagggatggctgtttgcatatcaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47460935 |
agatcttcttgttagagagcttgctaataagaagaaatggaaaaggtgtccaagatgcaggttctatgttgagaaaagggatggctgtttgcatatcaca |
47461034 |
T |
|
| Q |
117 |
tgcaggtaattaagttctagagacaattttcactcttttctttatttggatatataagnnnnnnnnnnnnnnnnnnnggtgtacgcttttaaacatgatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47461035 |
tgcaggtaattaagttctagagacaattttcactcttttctttatttggatatataagaaaagcaaaaaaataaaaaggtgtacgcttttaaacatgatt |
47461134 |
T |
|
| Q |
217 |
gtgcaagtttctcatcaaaagggtaatttcattaattcgtttatggcttagtaatcnnnnnnnnctcactaaacttatttttcaggttatcgatttaatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
47461135 |
gtgcaagtttctcatcaaaagggtaatttcactaatttgtttatggcttagtaatcttttttttctcacttaacttatttttcaggttatcgacttaatg |
47461234 |
T |
|
| Q |
317 |
tggtctcttgatttaaacatgtgtcacttccatcctttaattttactatgttaatccataatagtcattttcgtcacatacggataaaatagcggttgac |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47461235 |
tggtctcttgatttaaaaatgtgtcacttccatcctttaattttactatgttaatccataatagtcattttcgtcacatacgggtaaaatagcggttgac |
47461334 |
T |
|
| Q |
417 |
ttgattgatactttgatatttatatgaattagacggtagtgaaatatatttgacatttgaaattgttttcaccctaaactagttgttggaatacattcat |
516 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47461335 |
ttgattgatactttgatatttatttgaa-tagacggtagtgaaagatatttgacatttgaaattgttttcaccctaaactagttgttggaatacattcat |
47461433 |
T |
|
| Q |
517 |
cgggaaaaccctaaactagttgtcttctccaa |
548 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
47461434 |
tgggaaaaccctaaactagttgtcttccccaa |
47461465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 47455834 - 47455942
Alignment:
| Q |
17 |
agatcttcttgttagagagcttgctaataagaataaatggaaaaggtgtccaagatgcaggttctatgttgagaaaagggatggctgtttgcatatcaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |||| |||||||||||| |||| || || |||||||||||||| |
|
|
| T |
47455834 |
agatcttcttgttagagagcttgctaacgagaaaaaatggagaaggtgtcccacttgcaagttctatgttgaaaaaactgaaggttgtttgcatatcact |
47455933 |
T |
|
| Q |
117 |
tgcaggtaa |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
47455934 |
tgcaggtaa |
47455942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 47467601 - 47467696
Alignment:
| Q |
17 |
agatcttcttgttagagagcttgctaataagaataaatggaaaaggtgtccaagatgcaggttctatgttgagaaaagggatggctgtttgcatat |
112 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||| || |||||||||||||||||||| || ||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
47467601 |
agatctccttgtgagggagctggctaataagaaaaagtggaaaaggtgtccaagatgtagattctatgttgaaaaaaatgatggatgtttgcatat |
47467696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 556 - 588
Target Start/End: Original strand, 47461550 - 47461582
Alignment:
| Q |
556 |
ttgaaagatgctaattggattggtttctctgct |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47461550 |
ttgaaagatgctaattggattggtttctctgct |
47461582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 8148944 - 8148895
Alignment:
| Q |
36 |
cttgctaataagaataaatggaaaaggtgtccaagatgcaggttctatgt |
85 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
8148944 |
cttgctaagaaaaagaaatggaaaaggtgtccaagatgcaacttctatgt |
8148895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University