View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7732_low_5 (Length: 446)
Name: NF7732_low_5
Description: NF7732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7732_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 423
Target Start/End: Original strand, 1508344 - 1508752
Alignment:
| Q |
15 |
gttgttgtttacgaactttggataaatagaaatagtcatgtgtttaataggaagtctttgattggtgatcaacttattcgtctagtaatgaaccatggta |
114 |
Q |
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| T |
1508344 |
gttgttgtttgcgaactttggataaatagaaatagtcatgtgtttaataggaagtctttgattggtgatcaacttattcgtctagtaatgaaccatggta |
1508443 |
T |
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| Q |
115 |
acgaaccaaaccaatttcatgacatccatgtgggttcttagtcctaaccctcccttgagacacaacatatagatttcttggattcctccaccacacgatc |
214 |
Q |
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| T |
1508444 |
acgaaccaagccaatttcatcacatccatgtgggttcttagtcctaaccctcccttgagacacaacatatagatttcttggattcctccaccacacgatc |
1508543 |
T |
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| Q |
215 |
attataaggttaatgttgatgggtgtcatcagggatttatacttgtggatgtttgattagagagagactcatggtaagttcatttgtagtttctacaata |
314 |
Q |
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| T |
1508544 |
attataaggttaatgttgatgggtgtcatcagggatttatacttgtggatgtttgattagagagagactcatggtaagttcatttgtagtttctacaata |
1508643 |
T |
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| Q |
315 |
gaattgattcatgctctgcattgtagatataattctaaactcttcacattaaaatataaatgacaaatcagtttaatatcaaatacattattttttagat |
414 |
Q |
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| T |
1508644 |
gaattgatttatgctctgcattgtcgatataactctaaactcttcacattgaaatataaatgacaaatcagtttaatatcaaatacattattttttagat |
1508743 |
T |
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| Q |
415 |
gtcttcttc |
423 |
Q |
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| T |
1508744 |
gtcttcttc |
1508752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 17722427 - 17722618
Alignment:
| Q |
31 |
tttggataaatagaaatagtcatgtgtttaataggaagtctttgattggtgatcaacttattcgtctagtaatgaaccatggtaacgaaccaaaccaatt |
130 |
Q |
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| T |
17722427 |
tttggaaagatagaaatagtcatgtgtttaatacgaagtctttgattggtaatcaactttttcgtcttgtaatgaacca------------aagccaatt |
17722514 |
T |
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| Q |
131 |
tcatgacatccatgtgggttcttagtcctaaccctcccttgagacacaacatatagatttcttggattcctccaccacacgatcattataagg-ttaatg |
229 |
Q |
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| T |
17722515 |
tcattacacacatgtggattctcaggc----tcatcccttgagacacaacatagagatttcttggattgctccaccacatgatcattataaggtttaatg |
17722610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 47915496 - 47915463
Alignment:
| Q |
54 |
gtgtttaataggaagtctttgattggtgatcaac |
87 |
Q |
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| T |
47915496 |
gtgtttaataggaagtctttgattggtaatcaac |
47915463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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