View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7733_high_1 (Length: 597)

Name: NF7733_high_1
Description: NF7733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7733_high_1
NF7733_high_1
[»] chr8 (5 HSPs)
chr8 (235-524)||(7222550-7222838)
chr8 (4-206)||(7222865-7223078)
chr8 (102-206)||(40995840-40995945)
chr8 (131-206)||(9799269-9799344)
chr8 (547-578)||(7222496-7222527)
[»] chr5 (7 HSPs)
chr5 (106-201)||(21067574-21067669)
chr5 (133-206)||(24233161-24233234)
chr5 (134-191)||(39031651-39031708)
chr5 (150-201)||(19187142-19187193)
chr5 (154-201)||(39753340-39753387)
chr5 (144-206)||(38282493-38282555)
chr5 (131-200)||(28988416-28988485)
[»] chr2 (2 HSPs)
chr2 (131-206)||(9521083-9521158)
chr2 (152-200)||(16634423-16634471)
[»] chr4 (2 HSPs)
chr4 (131-206)||(27756453-27756528)
chr4 (129-206)||(19328802-19328879)
[»] chr3 (4 HSPs)
chr3 (133-180)||(1294951-1294998)
chr3 (100-206)||(8936099-8936204)
chr3 (144-200)||(43178598-43178654)
chr3 (126-199)||(52397372-52397445)
[»] chr1 (1 HSPs)
chr1 (131-201)||(32022638-32022708)
[»] scaffold0272 (1 HSPs)
scaffold0272 (131-206)||(6090-6165)
[»] chr7 (2 HSPs)
chr7 (152-206)||(7883761-7883815)
chr7 (131-200)||(30486975-30487044)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 235 - 524
Target Start/End: Complemental strand, 7222838 - 7222550
Alignment:
Q  235 tttccttaactagtgtctggaggcaccggttaacttgacctttgctgtaattaatagattagattttagtctacaatccacgttgactctaaatagcatc 334  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7222838 tttccttaactagtgtctggatgcaccggttaacatgacctt-gctataattagtagattagattttagtctacaatccacgttgactctaaatagcatc 7222740  T
Q  335 tatcttccataaatctttgattagatttgaaatgaaatagtagccaaatagactttagttaaactcgaatatatcacaactggtagcatagataggctgt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7222739 tatcttccataaatctttgattagatttgaaatgaaatagtagccaaatagactttagttaaactcgaatatatcacaactggtagcatagataggctgt 7222640  T
Q  435 gtttgtttacagactatcgaaaatgacctgtctattcctaacccataacaaaatcacacccttcaaataaaggaacacagaagaagtacc 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7222639 gtttgtttacagactatcgaaaatgacctgtctattcctaacccataacaaaatcacacccttcaaataaaggaacacagaagaagtacc 7222550  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 7223078 - 7222865
Alignment:
Q  4 atgtcgaagaatatataaatcattttaatcatgacataagaactactaattaattcagcgacaaacgactcataagtcatactatgtgattacaataagg 103  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7223078 atgtcgagaaatatataaatcattttaatcatgacataagaactactaattaattcagcgacaaacgactcataagtcatactatgtgattacaatatgg 7222979  T
Q  104 gtaatgttaatc-------------agtgcctccagatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaa 190  Q
    |||||||||| |             ||||||||| || | |||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||    
T  7222978 gtaatgttaacccgtgtcgttatctagtgcctccggacactggttaaggagttaaatataataaatattacattgaaatttgtgctgt--actattcaaa 7222881  T
Q  191 agtataaaaagcgtta 206  Q
    |  |||||||| ||||    
T  7222880 aacataaaaagtgtta 7222865  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 40995945 - 40995840
Alignment:
Q  102 gggtaatgttaatcagtgcctccagat-attggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 200  Q
    |||||||||||| |||||| ||||||  |||| |||| || | |||| || ||||||||||||||||||||||| |||||| | |||||||  |||||||    
T  40995945 gggtaatgttaaccagtgcttccagagcattgattaaagaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaa 40995846  T
Q  201 gcgtta 206  Q
    | ||||    
T  40995845 gtgtta 40995840  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 9799344 - 9799269
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    ||||||||||||||||| |  |||||||||||||| || ||||| |||||| | || |||||||||||||| ||||    
T  9799344 tggttaaggagttaaatgtggtaagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgtta 9799269  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 578
Target Start/End: Complemental strand, 7222527 - 7222496
Alignment:
Q  547 gatggtaaaaatgcttaaactgtcacgctagc 578  Q
    ||||||||||||||||||||||||||||||||    
T  7222527 gatggtaaaaatgcttaaactgtcacgctagc 7222496  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 21067574 - 21067669
Alignment:
Q  106 aatgttaatcagtgcctccagatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 201  Q
    |||||||| |||||||||| || | |||||||||||| |||| || ||||||||||||||||| ||||| |||||  | |||||||| ||||||||    
T  21067574 aatgttaaccagtgcctccggaaactggttaaggagtcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaag 21067669  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 24233161 - 24233234
Alignment:
Q  133 gttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    |||||||||| |||| ||||||||||| ||||| || |||||||||||| | ||||||| ||||||||| ||||    
T  24233161 gttaaggagtcaaatgtaataagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgtta 24233234  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 39031651 - 39031708
Alignment:
Q  134 ttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaa 191  Q
    |||||||||||||| |  ||| ||||||||| |||||| |||||||||||||||||||    
T  39031651 ttaaggagttaaatgtggtaaatattacattaaaatttatgctgtcaattattcaaaa 39031708  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 19187142 - 19187193
Alignment:
Q  150 aataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 201  Q
    ||||||| ||||||||||||||||| |||||| | |||||||| ||||||||    
T  19187142 aataagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaag 19187193  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 39753387 - 39753340
Alignment:
Q  154 agtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 201  Q
    ||||||||||||||| |||||||||||| | |||||||| ||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaag 39753340  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 38282493 - 38282555
Alignment:
Q  144 aaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    ||||||||||| ||||||||| ||||||||| |||||| | || |||| ||||||||| ||||    
T  38282493 aaatataataaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgtta 38282555  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 28988485 - 28988416
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 200  Q
    |||||||||||| |||| |  ||| |||||||||||||||||||  ||||| | |||||||| |||||||    
T  28988485 tggttaaggagtcaaatgtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaa 28988416  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 9521158 - 9521083
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    |||||||||||| |||| | |||||||||||||||||| |||||||||||| | || |||||||||||||| ||||    
T  9521158 tggttaaggagtcaaatgtgataagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgtta 9521083  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 16634423 - 16634471
Alignment:
Q  152 taagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 200  Q
    |||||||||||||| ||||||||||||||| | |||||||| |||||||    
T  16634423 taagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaa 16634471  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 27756453 - 27756528
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    |||||||||| | |||| || ||||||||||||||||||||||| |||||| | |||||||| |||||||| ||||    
T  27756453 tggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgtta 27756528  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 19328802 - 19328879
Alignment:
Q  129 attggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    |||||||||| ||| |||| |  |||||||||||||| || ||||||| |||| | ||||||||||||||||| ||||    
T  19328802 attggttaagaagtcaaatgtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgtta 19328879  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 1294998 - 1294951
Alignment:
Q  133 gttaaggagttaaatataataagtattacattgaaatttgtgctgtca 180  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  1294998 gttaagaagtcaaatgtaataagtattacattgaaatttgtgctgtca 1294951  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 8936204 - 8936099
Alignment:
Q  100 aagggtaatgttaatcagtgcctccagatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaa 199  Q
    |||||||||||||| |||||||||  |  | ||||||||||||||||| |   |||||||||||||||| ||||||||||||   || ||||| ||||||    
T  8936204 aagggtaatgttaaccagtgcctcgggc-actggttaaggagttaaatgtggcaagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaa 8936106  T
Q  200 agcgtta 206  Q
    || ||||    
T  8936105 agtgtta 8936099  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 43178598 - 43178654
Alignment:
Q  144 aaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 200  Q
    |||| |||||| |||||||||||||||||| ||||||| | || |||||||||||||    
T  43178598 aaatgtaataaatattacattgaaatttgtactgtcaacttttgaaaagtataaaaa 43178654  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 52397372 - 52397445
Alignment:
Q  126 gatattggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaa 199  Q
    ||||||||||||||| |||||| ||  ||||||||||||  |||||||| |||||| |  | ||||||||||||    
T  52397372 gatattggttaaggaattaaatgtagaaagtattacattagaatttgtgttgtcaacttctaaaaagtataaaa 52397445  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 32022708 - 32022638
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaag 201  Q
    |||||||||||| |||| |  ||||||||||||||||| |||| ||||||| | || ||||||||||||||    
T  32022708 tggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataaaaag 32022638  T

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Target: scaffold0272 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 6090 - 6165
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    |||||||||||| |||| || |||||||| ||||| ||||| ||||||||| | |||||||  |||||||| ||||    
T  6090 tggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgtta 6165  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 7883815 - 7883761
Alignment:
Q  152 taagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaagcgtta 206  Q
    ||||| ||| ||||||||||||||||||||||  ||||||| |||||||| ||||    
T  7883815 taagttttaaattgaaatttgtgctgtcaattcctcaaaagcataaaaagggtta 7883761  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 30487044 - 30486975
Alignment:
Q  131 tggttaaggagttaaatataataagtattacattgaaatttgtgctgtcaattattcaaaagtataaaaa 200  Q
    |||||||||||| |||| |  |||||||| ||||||||||||||| ||||| | || |||| ||||||||    
T  30487044 tggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaa 30486975  T

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