View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7733_high_10 (Length: 248)
Name: NF7733_high_10
Description: NF7733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7733_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 52353446 - 52353581
Alignment:
| Q |
20 |
ccttgatgagatctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagagatgttaaattgtggaa |
119 |
Q |
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| T |
52353446 |
ccttgatgagatctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagagatgttaaattgtggaa |
52353545 |
T |
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| Q |
120 |
cacaacaccaagtatggcatcaaccatttttgttaa |
155 |
Q |
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| T |
52353546 |
cacaacaccaagtatggcatcaaccatttttgttaa |
52353581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 52353616 - 52353697
Alignment:
| Q |
151 |
gttaagcaaacagaagatccatttttgtatcaaattgcaactagatagtcaacaacgggttaaaataaaagtgcccattcat |
232 |
Q |
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| T |
52353616 |
gttaagcaaacagaagatccatttttgtatcaaattgcaactagatagtcaacaacgggttaaaataaaagtgcccattcat |
52353697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 30437295 - 30437413
Alignment:
| Q |
32 |
ctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagagatgttaaattgtggaacacaacaccaag |
131 |
Q |
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| T |
30437295 |
ctaaggtggttgataggttttcagcctttgacttgattccagaaatagtagaaaattcattttgaagcagagatatcaaattctcaaacacaactccaag |
30437394 |
T |
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| Q |
132 |
tatggcatcaaccattttt |
150 |
Q |
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| T |
30437395 |
aaagggatcagccattttt |
30437413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 30484915 - 30484997
Alignment:
| Q |
49 |
ttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagagatgttaaattgtggaacacaacaccaag |
131 |
Q |
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| T |
30484915 |
ttttgagcctttgacttgattccagaaatggttgaaaattcattttgaaggagagatgtcaaattttcgaacacaactccaag |
30484997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 29873659 - 29873743
Alignment:
| Q |
20 |
ccttgatgagatctaacgtgtttgacaggttttcagcttttgacttgattgaagatacggtggaaaattcattttgaagtagaga |
104 |
Q |
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| T |
29873659 |
ccttgatcaaatctaaggtggttgatagtttttcagcctttgacttgataccagaaatggtagaaaattcattttgaaggagaga |
29873743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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