View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7733_high_5 (Length: 335)
Name: NF7733_high_5
Description: NF7733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7733_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 36224237 - 36223933
Alignment:
| Q |
14 |
ataacaaccccagttgaaatacgaaagcaaaagcaagagaaggtacgtacttgataaacaaatattgtgtcatatacggtgtttgtattttgatgttgaa |
113 |
Q |
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| T |
36224237 |
ataacaaccccagttgaaatacaaaagcaaaagcaagagaaggtacgtacttgataaacaaatattgtgtcatatacggtgtttgtattttgatgttgaa |
36224138 |
T |
|
| Q |
114 |
ataacacgactgttttttattataggttaaacatagtaacccttcttgttctaaatttgacgttgaaagaaagctaaggaagaacgagtgattgcagatg |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
36224137 |
ataacatgactgttttttattataggttaaacatagcaacccttcttgttctaaaattgacgttgaaagaaagctaaggaagaacgagtgattacatatg |
36224038 |
T |
|
| Q |
214 |
aaactggacgctcaagttgtctcttgtggttgaaaatatgatcttttgaagagttagttatggttttaggaaagtgagaactttactttagagataacct |
313 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
36224037 |
aaactggacgctgaagttg--tcttgtggttgaaaataagattttttgaagatttagttacggttgtaggaaagtgagaactttactttagagataacct |
36223940 |
T |
|
| Q |
314 |
tcaggat |
320 |
Q |
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||||||| |
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| T |
36223939 |
tcaggat |
36223933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 91 - 304
Target Start/End: Original strand, 8580769 - 8580993
Alignment:
| Q |
91 |
ggtgtttgtattttgatgttgaaata--acacgactgtttt-ttattataggttaaacatagtaacccttcttgttctaaatttgacgttgaaagaaagc |
187 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| ||| ||||||||||| | ||| ||||| |||||||||||| |
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| T |
8580769 |
ggtgtttgtattttgatgttaaaatataacatgactgtttttttattataggttaaattcagtcacccttcttgtccgaaaattgacattgaaagaaagc |
8580868 |
T |
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| Q |
188 |
taaggaagaacgagtga-ttgcagatgaaactggacgctcaagttg--tctcttgtggttgaaaatatgatcttttgaagagttagttatggttttag-- |
282 |
Q |
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| T |
8580869 |
taaggaagaacaagttatttgcagatgaaaccggatgctcaagttgtctctcttgtgatggaaaatatgat-ttttgaagatttagttatggttgtagaa |
8580967 |
T |
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| Q |
283 |
----gaaagtgagaactttactttag |
304 |
Q |
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||||||||||||||| |||||| |
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| T |
8580968 |
ctttgaaagtgagaactttgctttag |
8580993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 313
Target Start/End: Complemental strand, 39427393 - 39427153
Alignment:
| Q |
75 |
atattgtgtcatatacggtgtttgtattttgatgttgaaataacacgactgttttttattataggttaaacatagtaacccttcttgttctaaatttgac |
174 |
Q |
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||||||||||| ||| | |||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||| || ||||||| | ||| |||| |
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| T |
39427393 |
atattgtgtcacatatgatgtttgtattatgatgttgaaataacacagctgtttttaattataggttaaaatgagtcactgttcttgtcccaaaattgaa |
39427294 |
T |
|
| Q |
175 |
gttgaaagaaagctaaggaagaacgagtga-ttgcagatgaaactggacgctcaagttg--tctcttgtggttgaaaatatgatcttttgaagagttagt |
271 |
Q |
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|| ||||||||||||||||| || ||||| || | ||||||| ||| |||||| ||| ||||||||| ||||||| ||| | || |||||| ||||| |
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| T |
39427293 |
atttaaagaaagctaaggaagtacaagtgattttcttatgaaaccggatgctcaaattgtctctcttgtgattgaaaacatgct-ttctgaagatttagt |
39427195 |
T |
|
| Q |
272 |
tatggttttaggaaagtgagaactttactttagagataacct |
313 |
Q |
| |
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||| || ||||||||||||||||| |||| |||||||||| |
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| T |
39427194 |
catgcttgcaggaaagtgagaactttgcttttgagataacct |
39427153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 560899 - 560792
Alignment:
| Q |
92 |
gtgtttgtattttgatgttgaaataacacgactgtttttt-attataggttaaacatagtaacccttcttgttctaaatttgacgttgaaagaaagctaa |
190 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| | | |||||||||| || || ||||| |||| | |||||||| |
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| T |
560899 |
gtgtatgtattttgatgttgaaataacacgactgttttttcattataggtcaaattgaatcgcccttcttgtcctgaaattgacattgagaaaaagctaa |
560800 |
T |
|
| Q |
191 |
ggaagaac |
198 |
Q |
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|||||||| |
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| T |
560799 |
ggaagaac |
560792 |
T |
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