View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7733_low_13 (Length: 246)
Name: NF7733_low_13
Description: NF7733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7733_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 40852676 - 40852446
Alignment:
| Q |
1 |
aaactatatatataactaaataggaagaaaaatatatcaaaagtaagtgctcataaaagcatatattcagttataggtctgcttcagtgtatgttgttag |
100 |
Q |
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| T |
40852676 |
aaactatatatataactaaataggaagaaaaataaatcaaaagtaagtgctcataaaagcatatattcagttataggtctgcttcagtgtatgttgttag |
40852577 |
T |
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| Q |
101 |
ttttgagtattgagcactcaattatgatgaaagtgctagttcagcccaagctaaagatgatgacttgagctccacacttatcgatgtgtcgattctgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40852576 |
ttttgagtattgagcactcaattatgatgaaagtgctagttcagcccaagctaaagatgatgacttgagctccacacttatcgatgtgtcgattctgctt |
40852477 |
T |
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| Q |
201 |
tcgagcatgctgcacaactcttgcattgatg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40852476 |
tcgagcatgctgcacaactcttgcattgatg |
40852446 |
T |
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Back To:
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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 2791823 - 2791895
Alignment:
| Q |
159 |
gatgacttgagctccacacttatcgatgtgtcgattctgctttcgagcatgctgcacaactcttgcattgatg |
231 |
Q |
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||||||||||| ||| | |||| ||||||||||||||||| || |||||||||||||| |||||||| |||| |
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| T |
2791823 |
gatgacttgagatccgcgcttactgatgtgtcgattctgctctccagcatgctgcacaattcttgcatagatg |
2791895 |
T |
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