View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7733_low_14 (Length: 239)
Name: NF7733_low_14
Description: NF7733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7733_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31939618 - 31939839
Alignment:
| Q |
1 |
atggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaagtccaaacaaagaaca |
100 |
Q |
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| T |
31939618 |
atggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaagtccaaacaaagaaca |
31939717 |
T |
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| Q |
101 |
tggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttcttatatacaacattgttttaaagaggttttgcaatggga |
200 |
Q |
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| T |
31939718 |
tggtcagatgagtttaattgaaaaaatgctaacatgataatcctgagttcaataacatttcttatatacaacattgttttaaagaggttttgcaatggga |
31939817 |
T |
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| Q |
201 |
ggataacatgagtggcattagt |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
31939818 |
ggataacattagtggcattagt |
31939839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 1337809 - 1338026
Alignment:
| Q |
5 |
aataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaataaggactgccacttgcacaacaagtccaaacaaagaacatggt |
104 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||| | ||||||||||||||||||||||||| |
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| T |
1337809 |
aataacttaggattgagaaaatgcataatcataaatgaaaaagaaaacgatcgaaataagtacttccacttatataacaagtccaaacaaagaacatggt |
1337908 |
T |
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| Q |
105 |
cagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttcttatatacaacattgttttaaagaggttttgcaatgggaggat |
204 |
Q |
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||||||||||||||||||||||||||| |||| | ||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
1337909 |
cagatgagtttaattgaaaaaatgctagcatgctcatcctaaggttgataacatttctcaaatacaacattgttttaaagaggttttgcaatgggaggat |
1338008 |
T |
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| Q |
205 |
aacatgagtggcattagt |
222 |
Q |
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||||| |||||||||||| |
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| T |
1338009 |
aacataagtggcattagt |
1338026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 9390050 - 9390192
Alignment:
| Q |
80 |
aacaagtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttcttatatacaacattgttt |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
9390050 |
aacaagtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcctgaggtcaataacatttttcatatacaacattgttt |
9390149 |
T |
|
| Q |
180 |
taaagaggttttgcaatgggaggataacatgagtggcattagt |
222 |
Q |
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| T |
9390150 |
taaagaggttttgcaatgggaggatagcataagtggcattagt |
9390192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9389991 - 9390050
Alignment:
| Q |
1 |
atggaataacttgggattgagaaaatgcataatcataaatgaaaaagaaaacaattgaaa |
60 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
9389991 |
atggaataacatgggattgagaaaatgcagaatcagaaatgaaaaagaaaaaaattgaaa |
9390050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 5639796 - 5639857
Alignment:
| Q |
83 |
aagtccaaacaaagaacatggtcagatgagtttaattgaaaaaatgctaacatgataatcct |
144 |
Q |
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|||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5639796 |
aagttcaagcaaggaacatggccagatgagtttaattgaaaaaatgctaacatgataatcct |
5639857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 5639862 - 5639911
Alignment:
| Q |
170 |
aacattgttttaaagaggttttgcaatgggaggataacatgagtggcatt |
219 |
Q |
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||||||| ||||||||||||||||||| ||||||| ||| ||||||||| |
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| T |
5639862 |
aacattgctttaaagaggttttgcaatttgaggatagcataagtggcatt |
5639911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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