View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7733_low_7 (Length: 314)
Name: NF7733_low_7
Description: NF7733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7733_low_7 |
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| [»] scaffold0602 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 8636456 - 8636570
Alignment:
| Q |
6 |
tttcgtgttgacaaagtgatagaactagttaaacataagcatgtaaatgacgttcctcaatattttatttttaaagtacttaacatgaatgatttttaga |
105 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8636456 |
tttcctgttgacaaagtgatagaactagttaaaaataagcatgtaaatgacgttcctcaatattttatttttaaagcacttaacatgaatgatttttaga |
8636555 |
T |
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| Q |
106 |
cacgtttagattgaa |
120 |
Q |
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| T |
8636556 |
cacatttagattgaa |
8636570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 8636633 - 8636753
Alignment:
| Q |
183 |
gatattgttaataagaaatcagttgctaaattgatgcatacctcaattatnnnnnnncaccttattgaatcgtttaggttcccaaacaaagggtaataca |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||| |
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| T |
8636633 |
gatattgttaataagaaatcagttgctaaattgatgcatacctcagatataaaaatactccttattgaatcgtttaggttcccagccaaagggtaataca |
8636732 |
T |
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| Q |
283 |
actctcctcttttgatgtcca |
303 |
Q |
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| T |
8636733 |
actctcctcttttgatgtcca |
8636753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 8627762 - 8627678
Alignment:
| Q |
6 |
tttcgtgttgacaaagtgatagaactagttaaacataagcatgtaaatgacgttcctcaatattttatttttaaagtacttaaca |
90 |
Q |
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| T |
8627762 |
tttcctgttgacaaagtgatagaactagttaaaaataagcatgtaaatgacgttcctcaatattttatttttaaagtacttaaca |
8627678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 8622419 - 8622301
Alignment:
| Q |
184 |
atattgttaataagaaatcagttgctaaattgatgcatacctcaattatnnnnnnncaccttattgaatcgtttaggttcccaaacaaagggtaatacaa |
283 |
Q |
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| T |
8622419 |
atattgttaataagaaatcagtttctaaattgatgcatacctcaaatataaaaatatcccctattgtattgtttaggctcccaaccaaagggtaatacaa |
8622320 |
T |
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| Q |
284 |
ctctcctcttttgatgtcc |
302 |
Q |
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| T |
8622319 |
ctctcctcttttgatgtcc |
8622301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 8622536 - 8622483
Alignment:
| Q |
67 |
attttatttttaaagtacttaacatgaatgatttttagacacgtttagattgaa |
120 |
Q |
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| T |
8622536 |
attttatttttaaagtactcaacataaatgatttttagacacatttagattgaa |
8622483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 8622613 - 8622571
Alignment:
| Q |
11 |
tgttgacaaagtgatagaactagttaaacataagcatgtaaat |
53 |
Q |
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| T |
8622613 |
tgttgacaaagtgatagaactagttaaaaataagcatgtaaat |
8622571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 2027 - 2145
Alignment:
| Q |
184 |
atattgttaataagaaatcagttgctaaattgatgcatacctcaattatnnnnnnncaccttattgaatcgtttaggttcccaaacaaagggtaatacaa |
283 |
Q |
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| T |
2027 |
atattgttaataagaaatcagtttctaaattgatgcatacctcaaatataaaaatatcccctattgtattgtttaggctcccaaccaaagggtaatacaa |
2126 |
T |
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| Q |
284 |
ctctcctcttttgatgtcc |
302 |
Q |
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| T |
2127 |
ctctcctcttttgatgtcc |
2145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 1910 - 1963
Alignment:
| Q |
67 |
attttatttttaaagtacttaacatgaatgatttttagacacgtttagattgaa |
120 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |
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| T |
1910 |
attttatttttaaagtactcaacataaatgatttttagacacatttagattgaa |
1963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 37290238 - 37290280
Alignment:
| Q |
11 |
tgttgacaaagtgatagaactagttaaacataagcatgtaaat |
53 |
Q |
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| T |
37290238 |
tgttgacaaagtgatagaactagttaaaaataagcatgtaaat |
37290280 |
T |
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