View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7734_low_2 (Length: 293)

Name: NF7734_low_2
Description: NF7734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7734_low_2
NF7734_low_2
[»] chr1 (2 HSPs)
chr1 (1-277)||(10416770-10417046)
chr1 (1-269)||(10411058-10411326)
[»] chr5 (5 HSPs)
chr5 (1-277)||(35375237-35375513)
chr5 (1-277)||(35405423-35405699)
chr5 (45-256)||(35753692-35753903)
chr5 (46-170)||(35435889-35436013)
chr5 (47-250)||(35365740-35365943)
[»] chr2 (4 HSPs)
chr2 (1-277)||(30661853-30662129)
chr2 (1-257)||(30634124-30634380)
chr2 (1-235)||(30670533-30670767)
chr2 (119-172)||(30659873-30659926)
[»] chr8 (1 HSPs)
chr8 (36-249)||(13564231-13564443)
[»] chr7 (1 HSPs)
chr7 (46-172)||(29624309-29624435)
[»] chr3 (1 HSPs)
chr3 (46-90)||(1153578-1153622)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 10417046 - 10416770
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10417046 tataggaaacttttccactaatcttcgtttccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 10416947  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10416946 ttcttacaaattgcagacaatttatttgagggaacaattcctgattcaattggaaagcttaagaatctaggaatattgggcttggagagtaacgaattct 10416847  T
Q  201 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctatatggtaataaattggaagga 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10416846 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctatatggtaataaattggaagga 10416770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 10411326 - 10411058
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||||| | ||||||| || |||||||||||  ||||||||||||||||||||||||| |||| |||||| ||||| |||||||||| |    
T  10411326 tataggaaacttttccattcatcttcgtttgcttcatatggaatataatcaaatatatggagtgataccagaaagaattggacaactgattggtttaact 10411227  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
     ||||| | ||||   ||||||   |||| |||||||||||  || |||||||||| |||||||||||||||  ||||  ||||| |  |||||||||||    
T  10411226 gtcttaaatattgctaacaattcccttgatggaacaattccatattcaattggaaatcttaagaatctaggagaattgtacttggagtataacaaattct 10411127  T
Q  201 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctatatggtaataaat 269  Q
    | ||||| |||||||||||  |||||||||| ||| ||||||| ||||||  ||||| | |||||||||    
T  10411126 caggtaacattcctatagtacttggcaatctaactttgttgtcggaactaagtctatctcgtaataaat 10411058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 35375237 - 35375513
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||||||| ||||||| || ||||||||||||  |||||||||| ||||||||||||||||||||||||| |||||||| | |||||      
T  35375237 tataggaaacttttccactcatcttcgtttgcttcatatggagtctaatcaaatacatggagtgatacctgaaacaattggacaactaatcgatttaaca 35375336  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
     ||||  |||||  | ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||   |||||||||| |    
T  35375337 gtcttggaaatttcaaacaatttatttgagggaacaattcctgaatcaattggaaagcttaagaatctaggaatattgggcttggatggtaacaaattat 35375436  T
Q  201 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctatatggtaataaattggaagga 277  Q
    | ||||| |||||||||||||||||||||||||| || ||||||||||||| ||||| | |||||||||||||||||    
T  35375437 ctggtaaaattcctatagtcattggcaatcttacagtcttgtctgaactaggtctatctagtaataaattggaagga 35375513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 35405423 - 35405699
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||||||| ||||| | ||  || |||| || |||||| ||||||||||||||||||| |||| |||||  |||||||| ||||||| |    
T  35405423 tataggaaacttttccactcatcttggtttgttttatatcgataataataaaatatatggagtgataccggaaagaattgaacaactaatcggtttaatt 35405522  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
      ||||   |||| | ||||||| ||||||||||||||||| ||| |||||||||||||||| ||| | ||||||||||||||||   |||||||||| |    
T  35405523 gacttaaccattggatacaatttctttgagggaacaattccagattcaattggaaagcttaaaaatttgggaatattgggcttggatggtaacaaattat 35405622  T
Q  201 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctatatggtaataaattggaagga 277  Q
    ||||||| ||||| ||| ||||||||||||||||| ||||||||||||||| ||||| |  ||||||||| ||||||    
T  35405623 ccggtaacattccaataatcattggcaatcttactttgttgtctgaactaggtctatctaataataaatttgaagga 35405699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 256
Target Start/End: Original strand, 35753692 - 35753903
Alignment:
Q  45 ataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctga 144  Q
    |||||||||||||||| | |||||||| ||||||||| ||||||| |||||||  ||||||| | ||||   |||||||  |||||||| |||||||  |    
T  35753692 ataatcaaatatatggggagatacctggaacaattggacaactaactggtttatctttcttagatattgggtacaatttccttgagggaccaattccaaa 35753791  T
Q  145 tacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattccta-tagtcattggcaatcttactgtgttgtc 243  Q
    | |||||||||||||||| ||||||| || |||||  |||   | ||||||||| ||| || |||| |||| |||| ||||| ||||||||| | |||||    
T  35753792 ttcaattggaaagcttaaaaatctagtaagattggtattgcaaaataacaaattttccagttatatacctactagt-attggaaatcttactatcttgtc 35753890  T
Q  244 tgaactagatcta 256  Q
    ||||||| |||||    
T  35753891 tgaactatatcta 35753903  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 35435889 - 35436013
Alignment:
Q  46 taatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctgat 145  Q
    |||||||||||||||||  || ||||||| |||||| |||||||||||||||| |  |||  | ||    || |||||  | |||||||||||||| |||    
T  35435889 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 35435988  T
Q  146 acaattggaaagcttaagaatctag 170  Q
     ||||||||||||||| ||||||||    
T  35435989 tcaattggaaagcttacgaatctag 35436013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 250
Target Start/End: Original strand, 35365740 - 35365943
Alignment:
Q  47 aatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctgata 146  Q
    ||||||||||||||||  |||||| ||  |||||| ||||| |  |||||||  | |||| | || | | |||||||  ||||||||||||| ||  ||     
T  35365740 aatcaaatatatggagccatacctaaaggaattggacaacttaccggtttaacatacttagacataggaaacaatttccttgagggaacaataccaaatt 35365839  T
Q  147 caattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattccta-tagtcattggcaatcttactgtgttgtctg 245  Q
    ||||||||||| | || |||||||  | ||||  ||||||    |||||||| |  ||||||||||||| |||| ||||||||||||||| |||||||||    
T  35365840 caattggaaagttaaataatctagtgaaattgttcttgggagaaaacaaattatatggtaatattcctaatagt-attggcaatcttactatgttgtctg 35365938  T
Q  246 aacta 250  Q
    |||||    
T  35365939 aacta 35365943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 30661853 - 30662129
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||| ||||||||||  || ||||| ||||||  |||| |||||||||||||||| ||  |||||||||| |||||||||||||||  |    
T  30661853 tataggaaacttttcaactaatcttcattttcttcacatggagtctaataaaatatatggagtgatcccgaaaacaattggacaactaattggtttagtt 30661952  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
      |||| |  ||||  |||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||  | ||| |||||   |||||||||||     
T  30661953 gccttagattttgataacaatttccttgagggaacaattccagattcaattggaaagcttaagaatctaggaggaatggccttggctggtaacaaattca 30662052  T
Q  201 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctatatggtaataaattggaagga 277  Q
    ||||||| |||||  |||||||||||||||||||| |||||| |  | ||||||||| |   |||||||||||||||    
T  30662053 ccggtaacattccattagtcattggcaatcttactttgttgtatctaatagatctatctaacaataaattggaagga 30662129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 30634124 - 30634380
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||| ||||||||||  || ||||| ||||||  |||| |||||||||||||||| ||  |||||||||| |||||||||||||||  |    
T  30634124 tataggaaacttttcaactaatcttcattttcttcacatggagtctaataaaatatatggagtgatcccgaaaacaattggacaactaattggtttagtt 30634223  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
      ||||   |||   || |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||  |||||  ||||  | ||||||||||     
T  30634224 gccttaaccattagtgataatttacttgagggaacaattccagattcaattggaaagcttaagaatctaggatcattggctttggataataacaaattca 30634323  T
Q  201 ccggtaatattcctatagtcattggcaatcttactgtgttgtctgaactagatctat 257  Q
     |||||| |||||  |||||||||||||||||||| |||||| || | |||||||||    
T  30634324 tcggtaacattccattagtcattggcaatcttactttgttgtatggaatagatctat 30634380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30670533 - 30670767
Alignment:
Q  1 tataggaaacttttccactaatcttcgattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaat 100  Q
    ||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||| ||  |||||||||| |||||||||||||||  |    
T  30670533 tataggaaacttttcaactaatcttcaatttcttcatatggagtataatcaaatatatggagtgatcccgaaaacaattggacaactaattggtttagtt 30670632  T
Q  101 ttcttacaaattgaagacaatttatttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattct 200  Q
      ||||   |||    | |||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||  |||||  ||||    ||||||||||     
T  30670633 gccttaaccattagttataatttacttgagggagcaattccagattcaattggaaagcttaagaatctaggatcattggctttggatgataacaaattca 30670732  T
Q  201 ccggtaatattcctatagtcattggcaatcttact 235  Q
     |||||| |||||  ||||||||||||||||||||    
T  30670733 tcggtaacattccattagtcattggcaatcttact 30670767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 30659873 - 30659926
Alignment:
Q  119 aatttatttgagggaacaattcctgatacaattggaaagcttaagaatctagga 172  Q
    |||||| |||||||||||||||| |||  || ||||||||||||||||||||||    
T  30659873 aatttacttgagggaacaattccagatttaactggaaagcttaagaatctagga 30659926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 13564231 - 13564443
Alignment:
Q  36 atatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaac 135  Q
    |||||| | |||||||||||||||||||||||||  ||| ||| || |||||||| ||||||| || |||| | |||| | |||||||  ||||||||||    
T  13564231 atatggggcataatcaaatatatggagtgatacca-aaagaataggtcaactaatcggtttaacttccttaaagattggaaacaatttccttgagggaac 13564329  T
Q  136 aattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaatcttact 235  Q
    |||||| ||| ||||||||| |||||||||||||| || ||||| ||||      |||||||| || ||||| |||||||   | |||||||||||||||    
T  13564330 aattccagattcaattggaatgcttaagaatctagtaaaattggtcttgcaagaaaacaaattatctggtaacattcctactattattggcaatcttact 13564429  T
Q  236 gtgttgtctgaact 249  Q
     | |||| ||||||    
T  13564430 atcttgtatgaact 13564443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 29624435 - 29624309
Alignment:
Q  46 taatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctgat 145  Q
    |||||||||||||||||| |||||||||| ||||||  |||||||   ||||| || |||| | || |   ||||||   ||||||||||||| ||  ||    
T  29624435 taatcaaatatatggagtcatacctgaaagaattggagaactaatcaatttaacttacttaaacatcggcaacaattaccttgagggaacaataccatat 29624336  T
Q  146 acaattggaaagcttaagaatctagga 172  Q
     ||||||||||||||||||||||||||    
T  29624335 tcaattggaaagcttaagaatctagga 29624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 1153578 - 1153622
Alignment:
Q  46 taatcaaatatatggagtgatacctgaaacaattgggcaactaat 90  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||    
T  1153578 taatcaaatatatggagtgataccagaaagaattggacaactaat 1153622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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