View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7735_high_3 (Length: 286)
Name: NF7735_high_3
Description: NF7735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7735_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 28844581 - 28844864
Alignment:
| Q |
1 |
tcacaatttacatgatttcttttttacatttaaactgcagagtcctcatttcagaaatgctaaagcaagcaagaaaacacaaccatatactac---ataa |
97 |
Q |
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| T |
28844581 |
tcacaatttacatgatttcttttttacatttaaactgcagagtcctcatttcagaaatgctaaagcaagcaagaaaacacaaccatatactactacataa |
28844680 |
T |
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| Q |
98 |
catgcttaaattat--------gtaacctgacnnnnnnn-gagtacaataataaataagaaactttttatgttgaaatgcaaaaagctcatcccatgttc |
188 |
Q |
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|||||||||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28844681 |
catgcttaaattatattataatgtaacctgacaaaaaaaagagtacactgataaataagaaactttttatgttgaaatccaaaaagctcatcccatgttc |
28844780 |
T |
|
| Q |
189 |
attacagacttacaaatgctatttgttgattcattacaaacattgaccattctttttaattatcatatgaagcaatgcaagaag |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28844781 |
attacagacttacaaatgctatttgttgattcattacaaacattgaacattctttttaattatcatatgaagcaatgcaagaag |
28844864 |
T |
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