View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7735_high_4 (Length: 223)

Name: NF7735_high_4
Description: NF7735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7735_high_4
NF7735_high_4
[»] scaffold0455 (6 HSPs)
scaffold0455 (1-223)||(12492-12714)
scaffold0455 (1-97)||(13165-13262)
scaffold0455 (1-60)||(13021-13080)
scaffold0455 (1-97)||(12800-12897)
scaffold0455 (1-97)||(13348-13445)
scaffold0455 (1-97)||(13708-13805)
[»] chr6 (9 HSPs)
chr6 (1-223)||(28134456-28134678)
chr6 (1-97)||(12943932-12944029)
chr6 (1-97)||(28135129-28135226)
chr6 (1-60)||(28134985-28135044)
chr6 (1-97)||(28134764-28134861)
chr6 (1-97)||(28135312-28135409)
chr6 (1-97)||(28135672-28135769)
chr6 (1-97)||(28136032-28136129)
chr6 (2-63)||(12943565-12943626)
[»] chr2 (3 HSPs)
chr2 (1-97)||(14100235-14100332)
chr2 (2-63)||(14099869-14099930)
chr2 (2-70)||(14100053-14100121)
[»] chr7 (5 HSPs)
chr7 (1-97)||(29831947-29832044)
chr7 (1-97)||(29261310-29261407)
chr7 (2-70)||(29832158-29832226)
chr7 (2-63)||(29832349-29832410)
chr7 (2-70)||(19438469-19438537)
[»] chr5 (7 HSPs)
chr5 (1-97)||(30626962-30627059)
chr5 (2-70)||(1833946-1834014)
chr5 (2-70)||(40319412-40319480)
chr5 (2-70)||(41408065-41408133)
chr5 (2-63)||(30626595-30626656)
chr5 (2-70)||(20069585-20069653)
chr5 (2-70)||(30626779-30626847)
[»] chr4 (5 HSPs)
chr4 (1-97)||(4920929-4921026)
chr4 (2-70)||(4920747-4920815)
chr4 (2-60)||(27294543-27294601)
chr4 (1-70)||(33074445-33074514)
chr4 (2-70)||(27294727-27294795)
[»] chr3 (6 HSPs)
chr3 (23-97)||(50648650-50648725)
chr3 (2-63)||(50649049-50649110)
chr3 (2-69)||(15050436-15050503)
chr3 (1-70)||(36983623-36983692)
chr3 (1-70)||(37009062-37009131)
chr3 (2-70)||(15048982-15049050)
[»] chr1 (5 HSPs)
chr1 (30-97)||(27288189-27288257)
chr1 (2-60)||(52384404-52384462)
chr1 (2-63)||(27287850-27287911)
chr1 (2-70)||(27288034-27288102)
chr1 (2-70)||(52384210-52384278)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-70)||(302168-302236)
[»] chr8 (1 HSPs)
chr8 (34-97)||(30940357-30940421)


Alignment Details
Target: scaffold0455 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12714 - 12492
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaattttcagatcaaaatctgataggtaagtcgagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  12714 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactggaattttcagatcagaatctgataggtaagtcgagaa 12615  T
Q  101 tttctagtagtgcatgtctctctctttttatgtttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12614 tttctagtagtgcatgtctctctctttttatgtttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaa 12515  T
Q  201 atcaatttgttgaaaggaaagtt 223  Q
    |||||||||||||||||||||||    
T  12514 atcaatttgttgaaaggaaagtt 12492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13262 - 13165
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg-aaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||| || ||||||||||  |||||| ||||||||||||    
T  13262 acaaatataatcaatcagaccgttgaatatgaacttaatagagtaagaaggaagtaggaactgtaatttttcagatcggaatctggtaggtaagtcga 13165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13080 - 13021
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaa 60  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  13080 acaaatataatcaatcagactatttaatatgatcttaatagagtaagaaggaagtaggaa 13021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 12897 - 12800
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| ||   |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||| ||||| || || |||||||    
T  12897 acaaatataatcaatctgaacgttgaatatgaccttaatatagtaaaaaggaagtaggaacttgaatttttcagatcagaatctaattggaaagtcga 12800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13445 - 13348
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| | |  ||||||||||| |||||| |||||  ||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  13445 acaaatataatcaatcaggccgttgaatatgactttaatatagtaattaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 13348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13805 - 13708
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| | |  ||||||||||| |||||| |||||  ||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  13805 acaaatataatcaatcaggccgttgaatatgactttaatatagtaattaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 13708  T

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Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28134678 - 28134456
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaattttcagatcaaaatctgataggtaagtcgagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  28134678 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactggaattttcagatcagaatctgataggtaagtcgagaa 28134579  T
Q  101 tttctagtagtgcatgtctctctctttttatgtttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134578 tttctagtagtgcatgtctctctctttttatgtttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaa 28134479  T
Q  201 atcaatttgttgaaaggaaagtt 223  Q
    |||||||||||||||||||||||    
T  28134478 atcaatttgttgaaaggaaagtt 28134456  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12943932 - 12944029
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaa-ctgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  12943932 acaaatataatcaatcaaacatttgaatatgaccttaatagagtaagaaggaagtaggaatttgaaattttcagatcaaaatctaattggtaagtcga 12944029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28135226 - 28135129
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg-aaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||| || ||||||||||  |||||| ||||||||||||    
T  28135226 acaaatataatcaatcagaccgttgaatatgaacttaatagagtaagaaggaagtaggaactgtaatttttcagatcggaatctggtaggtaagtcga 28135129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28135044 - 28134985
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaa 60  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  28135044 acaaatataatcaatcagactatttaatatgatcttaatagagtaagaaggaagtaggaa 28134985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28134861 - 28134764
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| ||   |||||||||||||||||| ||||| |||||||||||||| |||| ||||||||||| ||||| || || |||||||    
T  28134861 acaaatataatcaatctgaacgttgaatatgaccttaatatagtaaaaaggaagtaggaacttgaatttttcagatcagaatctaattggaaagtcga 28134764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28135409 - 28135312
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| | |  ||||||||||| |||||| |||||  ||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  28135409 acaaatataatcaatcaggccgttgaatatgactttaatatagtaattaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 28135312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28135769 - 28135672
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| | |  ||||||||||| |||||| |||||  ||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  28135769 acaaatataatcaatcaggccgttgaatatgactttaatatagtaattaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 28135672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28136129 - 28136032
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| | |  ||||||||||| |||||| |||||  ||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  28136129 acaaatataatcaatcaggccgttgaatatgactttaatatagtaattaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 28136032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 12943565 - 12943626
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg 63  Q
    ||||||||||||||| |||  |||| |||||||||| |||| |||||| |||||||||||||    
T  12943565 caaatataatcaatcagaccgttgagtatgaccttattagaataagaacgaagtaggaactg 12943626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14100235 - 14100332
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| || ||||||||||    
T  14100235 acaaatataatcaatcagacctttgaatatgaccttaatagagtaagaaggaagtaggaacttgaaattttcagattgaaatctaattggtaagtcga 14100332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 14099869 - 14099930
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg 63  Q
    ||||||||||||||| ||   |||| |||||||||| |||| |||||| |||||||||||||    
T  14099869 caaatataatcaatcagatcgttgagtatgaccttattagaataagaacgaagtaggaactg 14099930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 14100053 - 14100121
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  ||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  14100053 caaatataatcaatcagaccgttgaatatgaccttattgaaataagaacgaagcacgaactgaaatttt 14100121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 29832044 - 29831947
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||| |||| |||||||||  ||||||||| ||||||||||    
T  29832044 acaaatataatcaatgagacctttgaatatgaccttaatagagtaagaaggaagtaggaacttgaatttttcagattgaaatctgattggtaagtcga 29831947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29261310 - 29261407
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaa-ttttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||| ||| |||  |||| ||| ||||||||| ||||  ||||||||||||||||||| ||||||||||  |||||||| || |||||||    
T  29261310 acaaatataatctatctgaccgttgattataaccttaataaagtagaaaggaagtaggaactgaaatttttcagatcggaatctgattggcaagtcga 29261407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 29832226 - 29832158
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| ||| |||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  29832226 caaatataatcaatcagaccattgaatatgaccttattgaaataagaacgaaggacgaactgaaatttt 29832158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 29832410 - 29832349
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg 63  Q
    |||||||||| |||| ||| ||||| |||||||||| |||| ||||||  ||||||||||||    
T  29832410 caaatataattaatcagaccattgagtatgaccttattagaataagaactaagtaggaactg 29832349  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 19438469 - 19438537
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  ||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  19438469 caaatataatcaatcagaccgttgaatatgaccttattgaaataagaacgaagcacgaactgaaatttt 19438537  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30626962 - 30627059
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaa-ctgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||  |||||||| |||||| |||||| || ||||||||||    
T  30626962 acaaatataatcaatcagacatttgaatatgaccttaatagagtaagaaggaagtaggaatttgaaatttgcagatcgaaatctaattggtaagtcga 30627059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 1833946 - 1834014
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| ||| |||||||||||||||| | || ||||||  | |||||||||||||||||    
T  1833946 caaatataatcaatcggaccattgaatatgaccttattggaataagaacaaggtaggaactgaaatttt 1834014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 40319412 - 40319480
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| ||| |||||||||||||||| | || ||||||  | |||||||||||||||||    
T  40319412 caaatataatcaatcggaccattgaatatgaccttattggaataagaacaaggtaggaactgaaatttt 40319480  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 41408133 - 41408065
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| ||| |||||||||||||||| | || ||||||  | |||||||||||||||||    
T  41408133 caaatataatcaatcggaccattgaatatgaccttattggaataagaacaaggtaggaactgaaatttt 41408065  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 30626595 - 30626656
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg 63  Q
    ||||||||||||||| |||  |||| |||||||||| |||| |||||| |||||||||||||    
T  30626595 caaatataatcaatcagaccgttgagtatgaccttattagaataagaacgaagtaggaactg 30626656  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 20069585 - 20069653
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||||||   ||| ||||| ||| | | || |||||| ||||||||||||||||||||    
T  20069585 caaatataatcaatccgatcgttgtatatggcctaattggactaagaacgaagtaggaactgaaatttt 20069653  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 30626779 - 30626847
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  ||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  30626779 caaatataatcaatcagaccgttgaatatgaccttattgaaataagaacgaagcacgaactgaaatttt 30626847  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4920929 - 4921026
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    ||||||||||||||||  ||  || |||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||| || ||||||||||    
T  4920929 acaaatataatcaatcatacctttaaatatgaccttaatagagtaagaaggaagtaggaacttgaaatttttagattgaaatctaattggtaagtcga 4921026  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 4920747 - 4920815
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  |||| |||||||||| |||| |||||| |||| | |||||||||||||    
T  4920747 caaatataatcaatcagaccgttgagtatgaccttattagaataagaacgaagcacgaactgaaatttt 4920815  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 27294543 - 27294601
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaa 60  Q
    ||||||||||||||| |||  |||| |||||||||| |||| |||||| ||||||||||    
T  27294543 caaatataatcaatcagaccgttgagtatgaccttattagaataagaacgaagtaggaa 27294601  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33074445 - 33074514
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||| |||| ||| |||  |||||||||||||||||||| |||||||||  || |||||| ||||||    
T  33074445 acaaatacaatctatcagaccgttgaatatgaccttaatagactaagaaggagataagaactggaatttt 33074514  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 27294727 - 27294795
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  ||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  27294727 caaatataatcaatcagaccgttgaatatgaccttattgaaataagaacgaagcacgaactgaaatttt 27294795  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 50648725 - 50648650
Alignment:
Q  23 ttgaatatgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||||  |||| || | ||||||||||    
T  50648725 ttgaatatgaccttaatagagtaagatggaagtaggaacttgaatttttcagattgaaatatgtttggtaagtcga 50648650  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 50649110 - 50649049
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg 63  Q
    ||||||||||||||| |||  |||| |||||||||| |||| |||||| |||||||||||||    
T  50649110 caaatataatcaatcagaccgttgagtatgaccttattagaataagaacgaagtaggaactg 50649049  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 15050436 - 15050503
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaattt 69  Q
    ||||||||||||||| |||  ||||||||||||||| |||| |||||| |||| || ||||| |||||    
T  15050436 caaatataatcaatcggaccgttgaatatgaccttattagaataagaacgaagcagtaactggaattt 15050503  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36983692 - 36983623
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||| |||| ||| |||  |||||||||||||||||||| |||| ||||  ||||||||| ||||||    
T  36983692 acaaatacaatctatcagaccgttgaatatgaccttaatagactaagcaggagataggaactggaatttt 36983623  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37009131 - 37009062
Alignment:
Q  1 acaaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||| |||| ||| |||  |||||||||||||||||||| |||| ||||  ||||||||| ||||||    
T  37009131 acaaatacaatctatcagaccgttgaatatgaccttaatagactaagcaggagataggaactggaatttt 37009062  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 15048982 - 15049050
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| | | ||||||||||| |||| | || |||||| |||| ||||||| |||||||    
T  15048982 caaatataatcaatcgggccattgaatatgaacttattggaataagaacgaaggaggaactaaaatttt 15049050  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 27288189 - 27288257
Alignment:
Q  30 tgaccttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 97  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  27288189 tgaccttaaaagagtaagaaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 27288257  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 52384462 - 52384404
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaa 60  Q
    ||||||||||||||| |||  |||| |||||||||| |||| |||||| ||||||||||    
T  52384462 caaatataatcaatcagaccgttgagtatgaccttattagaataagaacgaagtaggaa 52384404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 27287850 - 27287911
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactg 63  Q
    ||||||||||||||| ||   |||| |||||||||| |||| |||||| |||||||||||||    
T  27287850 caaatataatcaatcagatcgttgagtatgaccttattagaataagaacgaagtaggaactg 27287911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 27288034 - 27288102
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  ||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  27288034 caaatataatcaatcagaccgttgaatatgaccttattgaaataagaacgaagcacgaactgaaatttt 27288102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 52384278 - 52384210
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||| |||  ||||||||||||||| |  | |||||| |||| | |||||||||||||    
T  52384278 caaatataatcaatcagaccgttgaatatgaccttattgaaataagaacgaagcacgaactgaaatttt 52384210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 302168 - 302236
Alignment:
Q  2 caaatataatcaatccgactattgaatatgaccttaatagagtaagaaggaagtaggaactgaaatttt 70  Q
    ||||||||||||||||||   ||| ||||| ||| | | || |||||| ||||||||||||||||||||    
T  302168 caaatataatcaatccgatcgttgtatatggcctaattggactaagaacgaagtaggaactgaaatttt 302236  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 30940421 - 30940357
Alignment:
Q  34 cttaatagagtaagaaggaagtaggaactgaaa-ttttcagatcaaaatctgataggtaagtcga 97  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||||  |||||||| || |||||||    
T  30940421 cttaataaagtagaaaggaagtaggaactgaaatttttcagatcggaatctgattggcaagtcga 30940357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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