View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7735_high_5 (Length: 212)
Name: NF7735_high_5
Description: NF7735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7735_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 17770396 - 17770214
Alignment:
| Q |
14 |
tggtgttgatgtagtaggaatagaatgataacaaagtgttgaatgagtgtatgaaacttaaggatgttcaaatataaaaattgtaaaacaattaaacata |
113 |
Q |
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| T |
17770396 |
tggtgttgacgtggtaggaatagaatgataacaaagtgttgaatgagtgtatgaaacttagggatgttcaaatataaaaattgtaaaacaattaaacata |
17770297 |
T |
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| Q |
114 |
atcacatgtgtgggtgttgaaaaccgatacatgttagacattctatacattcactctgaagtatcggtgctccataaaaaatg |
196 |
Q |
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| T |
17770296 |
attacatgtgtgggtgtcgaaaaccgatacatgttagatattctatacattcactctgaagtatcggtactccataaaaaatg |
17770214 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 39827513 - 39827553
Alignment:
| Q |
50 |
tgttgaatgagtgtatgaaacttaaggatgttcaaatataa |
90 |
Q |
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| T |
39827513 |
tgttgaatgaatgtatgaaacttaaggatatccaaatataa |
39827553 |
T |
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