View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7735_low_3 (Length: 534)
Name: NF7735_low_3
Description: NF7735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7735_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 44090123 - 44089603
Alignment:
| Q |
13 |
attattctctgaaaaacgcatagctcaattattaaggacgttgcaatata-aggggttaataacaacaataaaaaatctagcagggatagcttggtaaaa |
111 |
Q |
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|||||||| ||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44090123 |
attattctttgaaaaacgtatagcttaattattaaggacattgcaatatacaggggttaataacaacaacaaaaaatctagcagggatagcttggtaaaa |
44090024 |
T |
|
| Q |
112 |
tatttatcatatt----------------atctcttcttcgctgtttgactatttcttctacaaatgaaaatagtaattgtcccaaaagttgctggttta |
195 |
Q |
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| T |
44090023 |
tatttatcatatttaaaatttgtcatattatctcttcttcgctgtttgactatttcttctacaaatgaaaatagtaattgtcccaaaagttgctggttta |
44089924 |
T |
|
| Q |
196 |
ttatttaaagaaatatttcatttaaatcatgaccgggtaaaatgttttcataggtatgcttaatgtcgttcnnnnnnnnnnnnnntaa-ggtatgcttaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
44089923 |
ttatttaaagaaatatttcatttaaatcatgaccgggtaaaatgttttcataggtatgcttaatgtcgttcaaaaaaataaaaaataaaggtatgcttaa |
44089824 |
T |
|
| Q |
295 |
tgcttccttgactcgtctcagtataattagaggatatagttttctaactaactaccaatacttagctgatgcactcaaataaacaaagataattttaatt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
44089823 |
tgcttccttgactcgtctcagtataattagaggatatagttttctaactaactaccaatacttcgctgatgcactcaaataaaca--gataattttaatt |
44089726 |
T |
|
| Q |
395 |
atcaaatatgtaaaatgaatgtccctactataatcaaaacccaagaattcaagaataactcaagtgtcctttgcaattcttcacgccttgaatcctctat |
494 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44089725 |
atcaaatatgtaaaatgaatgtcactactataatcaaaacccaagaattcaagaataactcaagtgtcctttgcaattcttcacgccttgaatcctctat |
44089626 |
T |
|
| Q |
495 |
tttacatattctgaatttccatc |
517 |
Q |
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||||||||||||||||||||||| |
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| T |
44089625 |
tttacatattctgaatttccatc |
44089603 |
T |
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